Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 3.9e-72 274.6 132 100.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 3.9e-72 274.6 132 100.0
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 2.4e-69 265.4 134 98.5
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 1.6e-33 146.4 96 77.1
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 1.6e-33 146.4 96 77.1
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 1.6e-33 146.4 96 77.1
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 2.7e-33 145.6 96 76.0
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 2.7e-33 145.6 96 76.0
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 3.6e-33 145.2 96 76.0
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 3.6e-33 145.2 96 76.0
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 3.6e-33 145.2 96 76.0
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 3.6e-33 145.2 96 76.0
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 3.6e-33 145.2 96 76.0
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 3.6e-33 145.2 96 76.0
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 3.6e-33 145.2 96 76.0
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 1.3e-32 143.3 100 73.0
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 1.8e-32 142.9 100 73.0
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 1.8e-32 142.9 100 74.0
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.1e-31 140.2 101 73.3
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 1.1e-31 140.2 100 73.0
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 1.1e-31 140.2 100 73.0
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 1.1e-31 140.2 100 73.0
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 1.5e-31 139.8 100 72.0
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 1.5e-31 139.8 100 73.0
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 1.9e-31 139.4 100 73.0
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 1.9e-31 139.4 100 72.0
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 3.3e-31 138.7 100 72.0
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 3.3e-31 138.7 100 72.0
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 4.3e-31 138.3 103 67.0
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 4.3e-31 138.3 103 67.0
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 4.3e-31 138.3 100 71.0
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 5.7e-31 137.9 99 73.7
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 5.7e-31 137.9 100 72.0
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.3e-30 136.7 100 71.0
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.3e-30 136.7 100 71.0
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 1.3e-30 136.7 96 72.9
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.3e-30 136.7 100 71.0
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.3e-30 136.7 100 70.0
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 1.3e-30 136.7 100 70.0
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.7e-30 136.3 100 69.0
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 2.2e-30 136.0 100 69.0
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 3.7e-30 135.2 100 71.0
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 3.7e-30 135.2 94 72.3
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 6.3e-30 134.4 100 68.0
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 6.3e-30 134.4 100 68.0
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 8.2e-30 134.0 94 73.4
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 8.2e-30 134.0 100 70.0
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 8.2e-30 134.0 100 70.0
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 8.2e-30 134.0 100 70.0
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 8.2e-30 134.0 100 68.0
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 8.2e-30 134.0 100 69.0
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 1.1e-29 133.7 100 68.0
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.1e-29 133.7 100 68.0
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 1.1e-29 133.7 100 68.0
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 1.4e-29 133.3 103 65.0
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 1.8e-29 132.9 100 69.0
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 3.1e-29 132.1 94 69.1
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 3.1e-29 132.1 100 68.0
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 3.1e-29 132.1 100 67.0
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 3.1e-29 132.1 100 67.0
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 3.1e-29 132.1 100 67.0
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 4.1e-29 131.7 100 69.0
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 4.1e-29 131.7 100 68.0
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 4.1e-29 131.7 100 67.0
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 5.3e-29 131.3 94 72.3
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 6.9e-29 131.0 100 69.0
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 9.1e-29 130.6 100 68.0
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 9.1e-29 130.6 100 68.0
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 1.2e-28 130.2 100 67.0
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 1.2e-28 130.2 100 66.0
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 1.2e-28 130.2 100 67.0
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 1.2e-28 130.2 99 67.7
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 2.0e-28 129.4 94 69.1
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 2.0e-28 129.4 100 66.0
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 2.0e-28 129.4 100 67.0
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 2.6e-28 129.0 100 66.0
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 2.6e-28 129.0 100 68.0
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.6e-28 129.0 100 66.0
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 3.4e-28 128.6 100 68.0
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.4e-28 128.6 100 67.0
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 3.4e-28 128.6 94 66.0
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 4.5e-28 128.3 100 66.0
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 7.7e-28 127.5 97 64.9
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 7.7e-28 127.5 100 63.0
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 7.7e-28 127.5 98 65.3
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.0e-27 127.1 100 67.0
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.3e-27 126.7 100 66.0
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 1.7e-27 126.3 100 63.0
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 2.2e-27 125.9 100 67.0
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 2.9e-27 125.6 100 65.0
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 2.9e-27 125.6 100 63.0
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 2.9e-27 125.6 94 68.1
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 5.0e-27 124.8 100 64.0
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 6.5e-27 124.4 100 64.0
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 6.5e-27 124.4 100 66.0
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 6.5e-27 124.4 100 66.0
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 6.5e-27 124.4 100 69.0
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 6.5e-27 124.4 100 62.0
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 6.5e-27 124.4 102 64.7
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 8.5e-27 124.0 100 62.0
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 8.5e-27 124.0 100 66.0
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 8.5e-27 124.0 100 66.0
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 8.5e-27 124.0 100 64.0
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 8.5e-27 124.0 100 64.0
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 1.4e-26 123.2 100 64.0
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 4.2e-26 121.7 100 65.0
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 7.2e-26 120.9 100 65.0
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 7.2e-26 120.9 100 61.0
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 7.2e-26 120.9 100 61.0
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 7.2e-26 120.9 100 61.0
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 1.6e-25 119.8 100 62.0
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 7.9e-25 117.5 100 62.0
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 1.4e-24 116.7 100 62.0
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 8.8e-24 114.0 116 55.2
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 2.6e-23 112.5 96 60.4
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 4.4e-23 111.7 94 60.6
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 7.4e-23 110.9 100 53.0
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 4.8e-22 108.2 103 51.5
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 6.3e-22 107.8 94 55.3
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 6.3e-22 107.8 94 55.3
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 4.1e-21 105.1 114 50.9
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 1.0e-16 90.5 94 47.9
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 3.7e-14 82.0 94 45.7
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 3.5e-12 75.5 56 66.1
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 1.0e-11 73.9 61 62.3
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 1.0e-11 73.9 57 66.7
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 3.8e-11 72.0 56 66.1
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 5.5e-10 68.2 124 30.6
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 4.7e-09 65.1 95 36.8
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.7e-09 65.1 39 82.1
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 1.5e-07 60.1 42 64.3


User provided reference genes

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