Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1369.0 709 100.0
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1369.0 709 100.0
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1364.4 709 99.7
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1363.2 709 99.6
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1360.1 710 99.6
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1357.0 709 99.2
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1349.3 709 98.3
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1320.8 709 96.5
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1311.6 709 95.6
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1302.0 709 94.6
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1276.5 709 93.8
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 0.0e+00 1242.6 748 87.8
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1214.1 696 89.1
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1192.6 701 85.9
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1178.7 700 83.7
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1176.4 707 83.7
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1173.7 694 87.3
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1170.6 699 84.0
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1170.2 685 85.4
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1168.3 685 85.5
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1167.5 697 84.1
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1167.5 697 84.1
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1166.8 707 83.6
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1166.8 695 84.9
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1165.2 697 84.2
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1164.8 705 83.0
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1164.1 699 83.7
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1163.7 688 84.3
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1162.9 685 85.3
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1161.7 685 85.1
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1161.4 685 85.1
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1160.2 699 83.3
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1160.2 686 85.4
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1160.2 698 84.4
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1158.7 700 83.1
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1158.3 696 85.9
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1157.9 685 85.4
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1157.9 685 85.4
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1157.9 685 85.4
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1157.5 697 83.5
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1157.1 685 84.8
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1153.7 697 83.5
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1153.3 699 83.3
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1153.3 688 84.4
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1152.9 700 83.3
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1149.0 695 83.6
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1149.0 704 82.8
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1148.7 686 84.0
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1148.7 700 82.0
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1147.5 696 83.5
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1146.0 695 82.2
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1145.2 699 82.0
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1143.6 696 83.6
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1143.3 700 82.6
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1140.2 705 82.1
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1140.2 689 83.3
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1138.3 689 83.2
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1136.7 746 81.2
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1134.8 694 82.0
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1132.1 697 81.9
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1129.4 671 84.1
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1129.0 731 79.8
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1128.6 703 81.8
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1127.5 686 83.4
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1127.1 705 80.3
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1125.5 685 82.9
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1125.5 702 81.3
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1124.0 711 80.7
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1122.1 701 80.5
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1121.7 728 78.8
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1121.3 701 80.5
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1120.5 687 82.4
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1120.1 710 79.9
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1118.6 698 81.1
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1118.2 697 80.3
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1117.1 691 81.5
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1117.1 711 79.7
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1115.9 704 80.4
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1115.9 684 82.6
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1115.1 733 76.9
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1109.4 722 78.7
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1109.4 685 82.5
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1106.7 694 80.4
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1104.4 686 81.3
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1102.4 704 79.7
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1101.7 684 80.8
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1099.0 684 80.3
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1097.8 631 91.3
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1095.5 706 79.5
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1094.3 668 81.7
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1094.0 685 79.9
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1088.9 730 76.2
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 9.7e-312 1073.2 764 72.9
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 4.8e-310 1067.4 704 78.0
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 8.1e-310 1066.6 699 76.0
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 2.9e-307 1058.1 669 79.4
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 7.2e-306 1053.5 695 75.4
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 1.2e-305 1052.7 730 75.1
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 5.7e-303 1043.9 666 80.2
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 6.7e-296 1020.4 706 73.9
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 6.7e-280 967.2 591 81.6
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.2e-279 966.5 631 78.9
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 7.5e-279 963.8 689 69.4
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 7.5e-279 963.8 689 69.4
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 4.0e-272 941.4 704 65.8
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 1.6e-268 929.5 691 67.7
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.6e-265 919.5 584 77.7
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 2.3e-264 915.6 692 66.5
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 2.3e-259 899.0 683 70.0
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 7.3e-258 894.0 554 80.7
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 3.7e-254 881.7 566 76.3
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 3.2e-253 878.6 589 75.4
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 8.0e-249 864.0 510 85.3
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 3.5e-244 848.6 675 67.0
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.1e-233 812.8 491 83.1
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 1.9e-226 789.6 681 58.1
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 1.1e-213 747.3 675 55.4
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 2.4e-200 703.0 441 77.3
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 6.9e-192 674.9 464 76.7
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 3.0e-155 553.1 328 81.7
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 2.8e-153 546.6 712 42.8
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 2.3e-142 510.4 757 37.8
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 2.3e-131 473.8 280 83.2
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 2.8e-124 450.3 270 80.4
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 2.6e-122 443.7 269 81.4
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 2.1e-119 434.1 368 60.9
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 4.0e-115 419.9 747 36.3
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.9e-110 403.3 236 83.5
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.8e-108 397.1 233 81.5
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 6.2e-108 396.0 253 76.3
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 6.0e-103 379.4 259 76.4
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 8.4e-97 359.0 252 73.8
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.3e-77 293.9 182 75.8
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 1.5e-74 285.0 215 68.4
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 2.2e-73 281.2 192 78.6
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 5.1e-70 270.0 148 85.1
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 3.1e-67 260.8 195 68.2
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.6e-58 231.9 192 68.8
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 3.8e-57 227.3 155 64.5
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.2e-55 222.2 167 68.3
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 9.7e-53 212.6 156 67.9
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 2.8e-52 211.1 214 57.0
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 3.7e-52 210.7 180 66.7
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.0e-49 202.6 489 29.0
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.4e-45 187.6 119 80.7
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 2.8e-44 184.5 114 82.5
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 5.0e-41 173.7 104 80.8
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.2e-39 169.1 111 80.2
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 4.0e-38 164.1 111 74.8
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 2.6e-37 161.4 128 72.7
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 4.5e-34 150.6 96 79.2
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.0e-33 149.4 139 65.5
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 4.3e-32 144.1 96 76.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 4.3e-32 144.1 96 76.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 7.3e-24 116.7 99 62.6
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 4.4e-21 107.5 73 74.0
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 5.8e-21 107.1 63 79.4
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 3.7e-20 104.4 69 71.0
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 1.4e-19 102.4 77 68.8
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 1.9e-19 102.1 59 83.1
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.1e-19 100.9 57 84.2
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 7.0e-19 100.1 69 72.5
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 6.6e-17 93.6 93 53.8
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 2.3e-14 85.1 65 67.7
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 3.2e-11 74.7 60 63.3
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 4.1e-11 74.3 78 48.7
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 1.5e-08 65.9 40 80.0
BcaB03g14888 Brassica carinata HOM05D005563 ORTHO05D006667 2.5e-08 65.1 66 59.1
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 1.4e-06 59.3 48 60.4
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.3e-06 58.5 55 54.5


User provided reference genes

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