Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p32750 Brassica napus HOM05D005848 ORTHO05D007532 0.0e+00 1203.7 594 100.0
BolC6t38398H Brassica oleracea HOM05D005848 ORTHO05D007532 0.0e+00 1191.0 599 98.7
BraA07t30539Z Brassica rapa HOM05D005848 ORTHO05D007532 3.4e-309 1064.3 650 84.6
A07p28980 Brassica napus HOM05D005848 ORTHO05D007532 5.8e-309 1063.5 649 84.6
A07p40790 Brassica napus HOM05D005848 ORTHO05D007532 1.8e-286 988.8 647 79.8
BraA07t31621Z Brassica rapa HOM05D005848 ORTHO05D007532 2.4e-286 988.4 647 79.8
Sp5g30360 Schrenkiella parvula HOM05D005848 ORTHO05D007532 6.9e-286 986.9 649 79.0
C06p49180 Brassica napus HOM05D005848 ORTHO05D007532 3.4e-285 984.6 647 79.6
BolC6t39951H Brassica oleracea HOM05D005848 ORTHO05D007532 7.6e-285 983.4 647 79.6
CARHR068530 Cardamine hirsuta HOM05D005848 ORTHO05D007532 3.9e-281 971.1 645 77.4
AL2G35110 Arabidopsis lyrata HOM05D005848 ORTHO05D007532 1.4e-278 962.6 647 77.1
Carub.0002s2201 Capsella rubella HOM05D005848 ORTHO05D007532 9.0e-278 959.9 647 76.5
BcaB02g07015 Brassica carinata HOM05D005848 ORTHO05D007532 3.8e-276 954.5 486 95.5
AT1G75200 Arabidopsis thaliana HOM05D005848 ORTHO05D007532 4.2e-275 951.0 647 76.4
Thhalv10018304m.g Eutrema salsugineum HOM05D005848 ORTHO05D007532 3.4e-269 931.4 499 90.6
Aa31LG4G5410 Aethionema arabicum HOM05D005848 ORTHO05D007532 2.2e-268 928.7 644 74.5
THA.LOC104809061 Tarenaya hassleriana HOM05D005848 ORTHO05D007532 5.0e-252 874.4 651 69.7
Cpa.g.sc36.76 Carica papaya HOM05D005848 ORTHO05D007532 3.7e-239 831.6 648 67.7
FAN20G0176 Fragaria x ananassa HOM05D005848 ORTHO05D007532 3.5e-237 825.1 653 66.5
FAN20G3094 Fragaria x ananassa HOM05D005848 ORTHO05D007532 3.5e-237 825.1 653 66.5
TWI56G0568 Tripterygium wilfordii HOM05D005848 ORTHO05D007532 1.3e-236 823.2 640 68.3
Prupe.1G379500 Prunus persica HOM05D005848 ORTHO05D007532 1.5e-235 819.7 641 67.6
FAN15G3081 Fragaria x ananassa HOM05D005848 ORTHO05D007532 6.1e-234 814.3 655 65.8
MD15G1027800 Malus domestica HOM05D005848 ORTHO05D007532 8.0e-234 813.9 645 66.4
FvH4_2g39810 Fragaria vesca HOM05D005848 ORTHO05D007532 1.8e-233 812.8 650 66.3
RcHm_v2.0_Chr6g0301031 Rosa chinensis HOM05D005848 ORTHO05D007532 3.0e-233 812.0 646 66.4
TWI36G0400 Tripterygium wilfordii HOM05D005848 ORTHO05D007532 3.0e-233 812.0 639 67.8
MD08G1031900 Malus domestica HOM05D005848 ORTHO05D007532 1.2e-232 810.1 647 66.0
CsaV3_2G028680 Cucumis sativus L. HOM05D005848 ORTHO05D007532 1.5e-232 809.7 644 65.4
FAN27G0156 Fragaria x ananassa HOM05D005848 ORTHO05D007532 1.5e-232 809.7 649 65.9
MELO3C010940.2 Cucumis melo HOM05D005848 ORTHO05D007532 7.5e-232 807.4 645 65.3
Manes.18G027000 Manihot esculenta HOM05D005848 ORTHO05D007532 7.5e-232 807.4 646 65.5
Gohir.A01G115800 Gossypium hirsutum HOM05D005848 ORTHO05D007532 4.9e-231 804.7 651 65.1
Potri.002G260700 Populus trichocarpa HOM05D005848 ORTHO05D007532 4.9e-231 804.7 645 65.6
Thecc.08G026700 Theobroma cacao HOM05D005848 ORTHO05D007532 1.4e-230 803.1 648 65.6
Duzib116G0609 Durio zibethinus HOM05D005848 ORTHO05D007532 7.0e-230 800.8 637 65.6
TAR381G1506 Trochodendron aralioides HOM05D005848 ORTHO05D007532 1.2e-229 800.0 642 64.3
Gorai.002G128000 Gossypium raimondii HOM05D005848 ORTHO05D007532 1.6e-229 799.7 643 65.9
Lalb_Chr14g0369301 Lupinus albus HOM05D005848 ORTHO05D007532 2.0e-229 799.3 637 65.5
Cfa018151 Carpinus fangiana HOM05D005848 ORTHO05D007532 3.5e-229 798.5 640 65.5
Sed0003570 Sechium edule HOM05D005848 ORTHO05D007532 1.0e-228 797.0 641 64.7
Gohir.D01G104100 Gossypium hirsutum HOM05D005848 ORTHO05D007532 1.3e-228 796.6 642 65.6
Ca_13375_v3 Cicer arietinum L. HOM05D005848 ORTHO05D007532 2.3e-228 795.8 647 64.8
Sabra02G0198400 Salix brachista HOM05D005848 ORTHO05D007532 1.1e-227 793.5 644 65.8
CiPaw.16G056600 Carya illinoinensis HOM05D005848 ORTHO05D007532 5.6e-227 791.2 647 64.9
Nn1g04993 Nelumbo nucifera HOM05D005848 ORTHO05D007532 5.6e-227 791.2 644 64.3
ClCG08G015110 Citrullus lanatus HOM05D005848 ORTHO05D007532 7.3e-227 790.8 669 63.1
Lj5g0008078 Lotus japonicus HOM05D005848 ORTHO05D007532 1.6e-226 789.6 643 65.6
Actinidia22546 Actinidia chinensis HOM05D005848 ORTHO05D007532 4.7e-226 788.1 635 64.6
vmacro11198 Vaccinium macrocarpon HOM05D005848 ORTHO05D007532 1.0e-225 786.9 641 64.4
TPR.G20173 Trifolium pratense HOM05D005848 ORTHO05D007532 1.8e-225 786.2 646 65.2
Glyma.17G250400 Glycine max HOM05D005848 ORTHO05D007532 3.0e-225 785.4 640 64.8
Rhsim07G0239300 Rhododendron simsii HOM05D005848 ORTHO05D007532 4.0e-225 785.0 640 63.6
Dinv36081 Davidia involucrata HOM05D005848 ORTHO05D007532 5.2e-225 784.6 632 65.2
Glyma.14G075000 Glycine max HOM05D005848 ORTHO05D007532 5.2e-225 784.6 638 64.4
arahy.Tifrunner.gnm1.ann1.K656SJ Arachis hypogaea HOM05D005848 ORTHO05D007532 6.8e-225 784.3 651 63.3
arahy.Tifrunner.gnm1.ann1.R41T5G Arachis hypogaea HOM05D005848 ORTHO05D007532 6.8e-225 784.3 651 63.3
Phvul.001G014532 Phaseolus vulgaris HOM05D005848 ORTHO05D007532 1.2e-224 783.5 638 64.9
PGR031G0193 Punica granatum HOM05D005848 ORTHO05D007532 1.2e-224 783.5 646 64.4
Peaxi162Scf00417g01212 Petunia axillaris HOM05D005848 ORTHO05D007532 1.5e-224 783.1 657 63.3
Hund17082 Selenicereus undatus HOM05D005848 ORTHO05D007532 2.6e-224 782.3 638 63.5
VMungo0647G1182 Vigna mungo HOM05D005848 ORTHO05D007532 3.4e-224 781.9 638 64.4
Psat6g008800 Pisum sativum HOM05D005848 ORTHO05D007532 4.4e-224 781.6 637 63.9
PSO541G0294 Papaver somniferum HOM05D005848 ORTHO05D007532 1.3e-223 780.0 643 64.7
vmacro04526 Vaccinium macrocarpon HOM05D005848 ORTHO05D007532 1.3e-223 780.0 642 64.0
Haze_17969 Corylus avellana HOM05D005848 ORTHO05D007532 2.2e-223 779.2 640 64.8
Nitab4.5_0006280g0010 Nicotiana tabacum HOM05D005848 ORTHO05D007532 1.1e-222 776.9 653 63.4
Sopen04g033930 Solanum pennellii HOM05D005848 ORTHO05D007532 1.8e-222 776.2 659 63.3
GSVIVG01009707001 Vitis vinifera HOM05D005848 ORTHO05D007532 3.2e-222 775.4 499 75.2
Nitab4.5_0005373g0030 Nicotiana tabacum HOM05D005848 ORTHO05D007532 4.1e-222 775.0 657 64.1
Sc02g0006150 Simmondsia chinensis HOM05D005848 ORTHO05D007532 4.1e-222 775.0 641 64.1
PSO675G8513 Papaver somniferum HOM05D005848 ORTHO05D007532 9.2e-222 773.9 645 63.9
Eucgr.F01897 Eucalyptus grandis HOM05D005848 ORTHO05D007532 2.0e-221 772.7 648 64.0
Lsat_1_v5_gn_1_17721 Lactuca sativa HOM05D005848 ORTHO05D007532 2.0e-221 772.7 653 62.3
QL02p008596 Quercus lobata HOM05D005848 ORTHO05D007532 3.5e-221 771.9 645 63.4
Ciclev10003946m.g Citrus clementina HOM05D005848 ORTHO05D007532 1.3e-220 770.0 501 74.5
CAN.G1226.12 Capsicum annuum HOM05D005848 ORTHO05D007532 3.9e-220 768.5 646 63.8
CANSAT35G0174 Cannabis sativa HOM05D005848 ORTHO05D007532 5.0e-220 768.1 644 63.2
Lj4A40T46 Lonicera japonica HOM05D005848 ORTHO05D007532 5.0e-220 768.1 654 62.7
Aqoxy6G01108 Aquilegia oxysepala HOM05D005848 ORTHO05D007532 2.5e-219 765.8 653 62.5
Solyc04g080340.3 Solanum lycopersicum HOM05D005848 ORTHO05D007532 1.2e-218 763.5 662 62.7
DCAR_020974 Daucus carota HOM05D005848 ORTHO05D007532 4.7e-218 761.5 506 73.7
COL.COLO4_26317 Corchorus olitorius HOM05D005848 ORTHO05D007532 1.4e-217 760.0 640 63.1
SalBow7G2715 Salvia bowleyana HOM05D005848 ORTHO05D007532 2.3e-217 759.2 501 73.1
PGSC0003DMG400004542 Solanum tuberosum HOM05D005848 ORTHO05D007532 4.4e-216 755.0 659 62.4
SGA_v2.0_scaffold54G19521 Striga asiatica HOM05D005848 ORTHO05D007532 6.4e-215 751.1 651 62.2
HanXRQChr02g0042111 Helianthus annuus HOM05D005848 ORTHO05D007532 2.4e-214 749.2 627 63.6
Oeu049954.1 Olea europaea HOM05D005848 ORTHO05D007532 2.4e-214 749.2 655 61.7
Zm00001eb059170 Zea mays HOM05D005848 ORTHO05D007532 2.4e-214 749.2 643 60.5
AUR62013733 Chenopodium quinoa HOM05D005848 ORTHO05D007532 9.2e-214 747.3 644 62.1
MBI16_g31221_MAGBIO Magnolia biondii HOM05D005848 ORTHO05D007532 1.2e-213 746.9 645 60.8
ECA247G2683 Erigeron canadensis HOM05D005848 ORTHO05D007532 1.6e-213 746.5 644 62.1
Migut.C00727 Erythranthe guttata HOM05D005848 ORTHO05D007532 1.6e-213 746.5 653 61.7
EL10Ac1g00774 Beta vulgaris HOM05D005848 ORTHO05D007532 3.5e-213 745.3 675 59.3
Ah.05g173260 Amaranthus hybridus HOM05D005848 ORTHO05D007532 1.0e-212 743.8 644 61.5
Atru.chr13.482 Acer truncatum HOM05D005848 ORTHO05D007532 1.3e-212 743.4 485 75.1
CSS0006033 Camellia sinensis var. sinensis HOM05D005848 ORTHO05D007532 6.6e-212 741.1 601 65.1
CDE01G0181 Ceratophyllum demersum HOM05D005848 ORTHO05D007532 1.1e-206 723.8 659 58.4
HPP92_012274 Vanilla planifolia HOM05D005848 ORTHO05D007532 1.2e-205 720.3 640 59.5
Os03g0775300 Oryza sativa ssp. japonica HOM05D005848 ORTHO05D007532 9.5e-203 710.7 485 70.9
Sed0016731 Sechium edule HOM05D005848 ORTHO05D007532 7.6e-200 701.0 604 63.2
Pp3c8_14160 Physcomitrium patens HOM05D005848 ORTHO05D007532 2.9e-199 699.1 537 65.7
Mapoly0010s0191 Marchantia polymorpha HOM05D005848 ORTHO05D007532 4.9e-199 698.4 536 63.8
ATR0733G119 Amborella trichopoda HOM05D005848 ORTHO05D007532 7.8e-197 691.0 530 65.8
unitig_37.g12994 Utricularia gibba HOM05D005848 ORTHO05D007532 7.8e-197 691.0 496 69.4
SMO119G0034 Selaginella moellendorffii HOM05D005848 ORTHO05D007532 6.6e-196 688.0 494 67.4
AagrBONN_evm.TU.Sc2ySwM_362.2225 Anthoceros agrestis HOM05D005848 ORTHO05D007532 1.9e-195 686.4 529 62.9
arahy.Tifrunner.gnm1.ann1.U1EDB6 Arachis hypogaea HOM05D005848 ORTHO05D007532 1.8e-193 679.9 649 58.1
AUR62023420 Chenopodium quinoa HOM05D005848 ORTHO05D007532 1.6e-181 640.2 647 56.1
vmacro04525 Vaccinium macrocarpon HOM05D005848 ORTHO05D007532 4.3e-179 632.1 421 74.1
MCO11G535 Micromonas commoda HOM05D005848 ORTHO05D007532 5.5e-166 588.6 531 57.4
Cre14.g623300 Chlamydomonas reinhardtii HOM05D005848 ORTHO05D007532 5.7e-163 578.6 513 56.1
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 6.1e-157 558.5 507 54.4
CBR_g42175 Chara braunii HOM05D005848 ORTHO05D007532 6.9e-145 518.5 315 75.6
Cc10_g02890 Coffea canephora HOM05D005848 ORTHO05D007532 7.7e-128 461.8 258 82.9
Medtr1g022225 Medicago truncatula HOM05D005848 ORTHO05D007532 4.2e-126 456.1 248 84.7
Cfa025522 Carpinus fangiana HOM05D005848 ORTHO05D007532 4.7e-125 452.6 522 49.4
Actinidia15328 Actinidia chinensis HOM05D005848 ORTHO05D007532 6.5e-119 432.2 643 42.9
QL02p008579 Quercus lobata HOM05D005848 ORTHO05D007532 7.5e-115 418.7 233 83.7
MSTRG.1277 Avicennia marina HOM05D005848 ORTHO05D007532 6.4e-106 389.0 307 64.8
Medtr1g022235 Medicago truncatula HOM05D005848 ORTHO05D007532 8.9e-84 315.5 381 50.9
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 8.7e-79 298.9 172 79.7
Cc10_g02880 Coffea canephora HOM05D005848 ORTHO05D007532 1.1e-78 298.5 393 48.3
Os10g0365900 Oryza sativa ssp. japonica HOM05D005848 ORTHO05D007532 1.2e-32 145.6 104 67.3
Gohir.D05G197166 Gossypium hirsutum HOM05D005848 ORTHO05D007532 1.6e-24 118.6 81 70.4
Hma1.2p1_1139F.1_g260870 Hydrangea macrophylla HOM05D005848 ORTHO05D007532 8.8e-23 112.8 68 77.9
arahy.Tifrunner.gnm1.ann1.B18DRP Arachis hypogaea HOM05D005848 ORTHO05D007532 2.0e-19 101.7 253 36.4
Nn7g38354 Nelumbo nucifera HOM05D005848 ORTHO05D007532 3.6e-16 90.9 59 72.9
Lj6g0011150 Lotus japonicus HOM05D000370 ORTHO05D001366 8.8e-15 86.3 65 66.2
Lj1g0001767 Lotus japonicus HOM05D005848 ORTHO05D038829 3.3e-14 84.3 39 92.3
arahy.Tifrunner.gnm1.ann1.T0WXUF Arachis hypogaea HOM05D005848 ORTHO05D038829 2.8e-13 81.3 73 57.5
CBR_g26428 Chara braunii HOM05D005848 ORTHO05D007532 1.2e-06 59.3 193 31.1


User provided reference genes

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