Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p22600 Brassica napus HOM05D000283 ORTHO05D004861 1.4e-62 242.7 117 100.0
BolC6t37451H Brassica oleracea HOM05D000283 ORTHO05D004861 7.3e-14 80.9 51 74.5
Sp5g07350 Schrenkiella parvula HOM05D000283 ORTHO05D004861 2.1e-13 79.3 41 90.2
Thhalv10010415m.g Eutrema salsugineum HOM05D000283 ORTHO05D004861 1.4e-12 76.6 41 82.9
Carub.0005s2170 Capsella rubella HOM05D000283 ORTHO05D004861 4.0e-12 75.1 41 85.4
BcaC02g09720 Brassica carinata HOM05D000283 ORTHO05D004861 5.2e-12 74.7 45 80.0
A04p04850 Brassica napus HOM05D000283 ORTHO05D004861 5.2e-12 74.7 45 80.0
C04p37350 Brassica napus HOM05D000283 ORTHO05D004861 5.2e-12 74.7 45 80.0
BolC4t25299H Brassica oleracea HOM05D000283 ORTHO05D004861 5.2e-12 74.7 45 80.0
BraA04t16198Z Brassica rapa HOM05D000283 ORTHO05D004861 5.2e-12 74.7 45 80.0
Aa31LG10G10070 Aethionema arabicum HOM05D000283 ORTHO05D004861 6.8e-12 74.3 41 82.9
AT3G55070 Arabidopsis thaliana HOM05D000283 ORTHO05D004861 6.8e-12 74.3 41 85.4
BcaC07g39830 Brassica carinata HOM05D000283 ORTHO05D004861 8.9e-12 73.9 41 85.4
BolC8t50654H Brassica oleracea HOM05D000283 ORTHO05D004861 8.9e-12 73.9 41 85.4
CARHR165090 Cardamine hirsuta HOM05D000283 ORTHO05D004861 1.2e-11 73.6 41 82.9
C08p30310 Brassica napus HOM05D000283 ORTHO05D004861 1.5e-11 73.2 41 85.4
AL5G36190 Arabidopsis lyrata HOM05D000283 ORTHO05D004861 2.0e-11 72.8 42 83.3
A09p48090 Brassica napus HOM05D000283 ORTHO05D004861 2.0e-11 72.8 41 85.4
BraA09t40263Z Brassica rapa HOM05D000283 ORTHO05D004861 2.0e-11 72.8 41 85.4
arahy.Tifrunner.gnm1.ann1.5B7TYX Arachis hypogaea HOM05D000283 ORTHO05D004861 7.5e-11 70.9 39 84.6
arahy.Tifrunner.gnm1.ann1.M3B011 Arachis hypogaea HOM05D000283 ORTHO05D004861 7.5e-11 70.9 39 84.6
BcaB01g00131 Brassica carinata HOM05D000283 ORTHO05D004861 7.5e-11 70.9 41 82.9
Manes.07G106200 Manihot esculenta HOM05D000283 ORTHO05D004861 9.9e-11 70.5 39 82.1
BcaB02g07699 Brassica carinata HOM05D000283 ORTHO05D004861 1.3e-10 70.1 49 77.6
Nn2g12826 Nelumbo nucifera HOM05D000283 ORTHO05D004861 1.3e-10 70.1 41 80.5
Cpa.g.sc1.298 Carica papaya HOM05D000283 ORTHO05D004861 1.7e-10 69.7 41 80.5
Ca_11339_v3 Cicer arietinum L. HOM05D000283 ORTHO05D004861 1.7e-10 69.7 39 82.1
Glyma.10G292551 Glycine max HOM05D000283 ORTHO05D004861 1.7e-10 69.7 39 82.1
Glyma.20G242800 Glycine max HOM05D000283 ORTHO05D004861 1.7e-10 69.7 39 82.1
Lj5g0010112 Lotus japonicus HOM05D004526 ORTHO05D004861 1.7e-10 69.7 39 82.1
Phvul.007G007400 Phaseolus vulgaris HOM05D000283 ORTHO05D004861 1.7e-10 69.7 39 82.1
Psat6g239360 Pisum sativum HOM05D000283 ORTHO05D004861 1.7e-10 69.7 39 82.1
Cfa001563 Carpinus fangiana HOM05D000283 ORTHO05D004861 2.2e-10 69.3 39 82.1
Lalb_Chr02g0143841 Lupinus albus HOM05D000283 ORTHO05D004861 2.2e-10 69.3 39 79.5
Aqoxy4G03100 Aquilegia oxysepala HOM05D000283 ORTHO05D004861 2.9e-10 68.9 39 79.5
CANSAT56G1270 Cannabis sativa HOM05D000283 ORTHO05D004861 2.9e-10 68.9 39 82.1
FvH4_7g20680 Fragaria vesca HOM05D000283 ORTHO05D004861 2.9e-10 68.9 39 82.1
FAN01G0258 Fragaria x ananassa HOM05D000283 ORTHO05D004861 2.9e-10 68.9 42 78.6
FAN01G0780 Fragaria x ananassa HOM05D000283 ORTHO05D004861 2.9e-10 68.9 39 82.1
FAN03G0565 Fragaria x ananassa HOM05D000283 ORTHO05D004861 2.9e-10 68.9 39 82.1
FAN06G3181 Fragaria x ananassa HOM05D000283 ORTHO05D004861 2.9e-10 68.9 39 82.1
FAN10G1136 Fragaria x ananassa HOM05D000283 ORTHO05D004861 2.9e-10 68.9 39 82.1
Lalb_Chr21g0307121 Lupinus albus HOM05D000283 ORTHO05D004861 2.9e-10 68.9 39 79.5
MD01G1115200 Malus domestica HOM05D000283 ORTHO05D004861 2.9e-10 68.9 39 82.1
MD01G1115600 Malus domestica HOM05D000283 ORTHO05D004861 2.9e-10 68.9 39 82.1
MD07G1183500 Malus domestica HOM05D000283 ORTHO05D004861 2.9e-10 68.9 39 82.1
Prupe.2G222200 Prunus persica HOM05D000283 ORTHO05D004861 2.9e-10 68.9 39 82.1
RcHm_v2.0_Chr1g0364711 Rosa chinensis HOM05D000283 ORTHO05D004861 2.9e-10 68.9 39 82.1
CAN.G786.36 Capsicum annuum HOM05D000283 ORTHO05D004861 3.7e-10 68.6 39 79.5
Cc02_g08700 Coffea canephora HOM05D000283 ORTHO05D004861 3.7e-10 68.6 39 79.5
Gohir.A05G343200 Gossypium hirsutum HOM05D000283 ORTHO05D004861 3.7e-10 68.6 41 78.0
MBI05_g05301_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D004861 3.7e-10 68.6 43 76.7
Medtr1g116055 Medicago truncatula HOM05D000283 ORTHO05D004861 3.7e-10 68.6 53 66.0
Oeu050636.1 Olea europaea HOM05D000283 ORTHO05D004861 3.7e-10 68.6 41 78.0
Os05g0160100 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D004861 3.7e-10 68.6 43 74.4
Peaxi162Scf00135g00213 Petunia axillaris HOM05D000283 ORTHO05D004861 3.7e-10 68.6 39 79.5
Thecc.10G063500 Theobroma cacao HOM05D000283 ORTHO05D004861 3.7e-10 68.6 41 78.0
TWI63G0514 Tripterygium wilfordii HOM05D000283 ORTHO05D004861 3.7e-10 68.6 39 79.5
VMungo0720G1844 Vigna mungo HOM05D000283 ORTHO05D004861 3.7e-10 68.6 39 82.1
CSS0021401 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 4.9e-10 68.2 39 79.5
CSS0032920 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 4.9e-10 68.2 39 79.5
SalBow6G5798 Salvia bowleyana HOM05D000283 ORTHO05D004861 4.9e-10 68.2 44 75.0
Atru.BG.269.p Acer truncatum HOM05D000283 ORTHO05D004861 6.4e-10 67.8 44 72.7
CiPaw.02G178300 Carya illinoinensis HOM05D000283 ORTHO05D004861 6.4e-10 67.8 39 79.5
Dinv31387 Davidia involucrata HOM05D000283 ORTHO05D004861 6.4e-10 67.8 39 79.5
Hma1.2p1_0207F.1_g087990 Hydrangea macrophylla HOM05D000283 ORTHO05D004861 6.4e-10 67.8 39 79.5
Manes.10G039500 Manihot esculenta HOM05D000283 ORTHO05D004861 6.4e-10 67.8 39 79.5
Hund22437 Selenicereus undatus HOM05D000283 ORTHO05D004861 6.4e-10 67.8 39 79.5
Sc20g0002340 Simmondsia chinensis HOM05D000283 ORTHO05D004861 6.4e-10 67.8 39 79.5
Solyc04g010120.3 Solanum lycopersicum HOM05D000283 ORTHO05D004861 6.4e-10 67.8 39 76.9
THA.LOC104809995 Tarenaya hassleriana HOM05D000283 ORTHO05D004861 6.4e-10 67.8 42 76.2
TPR.G40391 Trifolium pratense HOM05D000283 ORTHO05D004861 6.4e-10 67.8 38 81.6
GSVIVG01032634001 Vitis vinifera HOM05D000283 ORTHO05D004861 6.4e-10 67.8 39 79.5
Actinidia13845 Actinidia chinensis HOM05D000283 ORTHO05D004861 8.3e-10 67.4 39 79.5
Ciclev10031660m.g Citrus clementina HOM05D000283 ORTHO05D004861 8.3e-10 67.4 44 72.7
Haze_16966 Corylus avellana HOM05D000283 ORTHO05D004861 8.3e-10 67.4 38 81.6
FAN06G3682 Fragaria x ananassa HOM05D000283 ORTHO05D004861 8.3e-10 67.4 39 79.5
MBI08_g12332_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D004861 8.3e-10 67.4 39 79.5
QL08p057473 Quercus lobata HOM05D000283 ORTHO05D004861 8.3e-10 67.4 84 46.4
ATR0810G097 Amborella trichopoda HOM05D000283 ORTHO05D004861 1.1e-09 67.0 45 68.9
Duzib106G0238 Durio zibethinus HOM05D000283 ORTHO05D004861 1.1e-09 67.0 41 78.0
MBI15_g43999_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D004861 1.1e-09 67.0 61 59.0
CDE11G0382 Ceratophyllum demersum HOM05D000283 ORTHO05D004861 1.4e-09 66.6 39 76.9
COL.COLO4_05799 Corchorus olitorius HOM05D000283 ORTHO05D004861 1.4e-09 66.6 41 75.6
ECA232G1460 Erigeron canadensis HOM05D000283 ORTHO05D004861 1.4e-09 66.6 39 76.9
HanXRQChr09g0246601 Helianthus annuus HOM05D000283 ORTHO05D004861 1.4e-09 66.6 39 76.9
HanXRQChr15g0496791 Helianthus annuus HOM05D000283 ORTHO05D004861 1.4e-09 66.6 39 76.9
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 1.4e-09 66.6 39 74.4
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 1.9e-09 66.2 39 76.9
MBI02_g23397_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D004861 1.9e-09 66.2 39 76.9
CSS0019692 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 2.4e-09 65.9 39 76.9
PSO384G1824 Papaver somniferum HOM05D000283 ORTHO05D004861 2.4e-09 65.9 40 72.5
PSO699G0010 Papaver somniferum HOM05D000283 ORTHO05D004861 2.4e-09 65.9 40 72.5
DCAR_019151 Daucus carota HOM05D000283 ORTHO05D004861 3.2e-09 65.5 42 69.0
DCAR_019154 Daucus carota HOM05D000283 ORTHO05D004861 3.2e-09 65.5 42 69.0
Nitab4.5_0006737g0080 Nicotiana tabacum HOM05D000283 ORTHO05D004861 3.2e-09 65.5 41 73.2
Sopen04g005260 Solanum pennellii HOM05D000283 ORTHO05D004861 3.2e-09 65.5 39 74.4
Lj8A93G63 Lonicera japonica HOM05D000283 ORTHO05D004861 4.1e-09 65.1 39 74.4
Nitab4.5_0007221g0020 Nicotiana tabacum HOM05D000283 ORTHO05D004861 4.1e-09 65.1 41 73.2
Potri.008G047300 Populus trichocarpa HOM05D000283 ORTHO05D004861 4.1e-09 65.1 39 74.4
unitig_0.g2403 Utricularia gibba HOM05D000283 ORTHO05D004861 4.1e-09 65.1 39 71.8
Sed0024713 Sechium edule HOM05D000283 ORTHO05D004861 5.4e-09 64.7 39 74.4
TAR623G1321 Trochodendron aralioides HOM05D000283 ORTHO05D004861 5.4e-09 64.7 39 74.4
CSS0006131 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 7.1e-09 64.3 39 76.9
CiPaw.01G279200 Carya illinoinensis HOM05D000283 ORTHO05D004861 7.1e-09 64.3 39 76.9
ClCG02G013690 Citrullus lanatus HOM05D000283 ORTHO05D004861 7.1e-09 64.3 39 74.4
MELO3C011710.2 Cucumis melo HOM05D000283 ORTHO05D004861 7.1e-09 64.3 39 74.4
CsaV3_5G006500 Cucumis sativus L. HOM05D000283 ORTHO05D004861 7.1e-09 64.3 39 74.4
Eucgr.J01144 Eucalyptus grandis HOM05D000283 ORTHO05D004861 7.1e-09 64.3 39 74.4
Rhsim09G0155700 Rhododendron simsii HOM05D000283 ORTHO05D004861 7.1e-09 64.3 38 76.3
SEGI_26055 Sequoiadendron giganteum HOM05D000283 ORTHO05D004861 9.2e-09 63.9 43 67.4
SGA_v2.0_scaffold426G51499 Striga asiatica HOM05D000283 ORTHO05D004861 9.2e-09 63.9 39 74.4
Ah.16g108160 Amaranthus hybridus HOM05D000283 ORTHO05D004861 1.2e-08 63.5 39 76.9
MSTRG.8232 Avicennia marina HOM05D000283 ORTHO05D004861 1.2e-08 63.5 39 76.9
Gohir.A10G208700 Gossypium hirsutum HOM05D000283 ORTHO05D004861 1.2e-08 63.5 41 75.6
Gohir.D04G081100 Gossypium hirsutum HOM05D000283 ORTHO05D004861 1.2e-08 63.5 41 73.2
Gohir.D10G217000 Gossypium hirsutum HOM05D000283 ORTHO05D004861 1.2e-08 63.5 41 75.6
Gorai.011G242600 Gossypium raimondii HOM05D000283 ORTHO05D004861 1.2e-08 63.5 41 75.6
PGR044G2742 Punica granatum HOM05D000283 ORTHO05D004861 1.2e-08 63.5 39 74.4
Gorai.012G092000 Gossypium raimondii HOM05D000283 ORTHO05D004861 1.6e-08 63.2 41 73.2
Zm00001eb282460 Zea mays HOM05D000283 ORTHO05D004861 1.6e-08 63.2 43 69.8
Hma1.2p1_0348F.1_g131730 Hydrangea macrophylla HOM05D000283 ORTHO05D004861 2.7e-08 62.4 39 71.8
Migut.F01536 Erythranthe guttata HOM05D000283 ORTHO05D004861 3.5e-08 62.0 43 72.1
Mapoly0093s0006 Marchantia polymorpha HOM05D000283 ORTHO05D004861 3.5e-08 62.0 39 71.8
RcHm_v2.0_Chr5g0057291 Rosa chinensis HOM05D000283 ORTHO05D004861 3.5e-08 62.0 38 76.3
Pp3c24_18980 Physcomitrium patens HOM05D000283 ORTHO05D004861 4.6e-08 61.6 39 71.8
EL10Ac2g03514 Beta vulgaris HOM05D000283 ORTHO05D004861 6.0e-08 61.2 38 76.3
AUR62025543 Chenopodium quinoa HOM05D000283 ORTHO05D004861 7.8e-08 60.8 39 74.4
AUR62043534 Chenopodium quinoa HOM05D000283 ORTHO05D004861 7.8e-08 60.8 39 74.4
AUR62043801 Chenopodium quinoa HOM05D000283 ORTHO05D004861 7.8e-08 60.8 39 74.4
Sabra10G0165600 Salix brachista HOM05D000283 ORTHO05D004861 1.3e-07 60.1 39 69.2
Pp3c8_20500 Physcomitrium patens HOM05D000283 ORTHO05D004861 1.7e-07 59.7 39 69.2
Sed0007781 Sechium edule HOM05D000283 ORTHO05D004861 1.7e-07 59.7 39 69.2
Ah.10g033170 Amaranthus hybridus HOM05D000283 ORTHO05D004861 2.3e-07 59.3 43 67.4
TAR633G2156 Trochodendron aralioides HOM05D000283 ORTHO05D004861 5.1e-07 58.2 39 69.2
AagrBONN_evm.TU.Sc2ySwM_228.2194 Anthoceros agrestis HOM05D000283 ORTHO05D004861 1.1e-06 57.0 39 61.5
HPP92_016703 Vanilla planifolia HOM05D000283 ORTHO05D004861 1.5e-06 56.6 38 71.1
SMO119G0426 Selaginella moellendorffii HOM05D000283 ORTHO05D004861 3.3e-06 55.5 39 64.1


User provided reference genes

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