Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p19200 Brassica napus HOM05D013534 ORTHO05D102065 4.4e-127 458.0 232 100.0
BcaB06g26439 Brassica carinata HOM05D013534 ORTHO05D093101 2.1e-12 77.0 131 38.9
BcaB06g26442 Brassica carinata HOM05D013534 ORTHO05D090866 6.1e-12 75.5 181 33.7
CARHR050050 Cardamine hirsuta HOM05D001363 ORTHO05D002212 2.4e-08 63.5 69 49.3
Glyma.10G243200 Glycine max HOM05D001363 ORTHO05D002212 2.4e-08 63.5 72 48.6
AT3G22880 Arabidopsis thaliana HOM05D001363 ORTHO05D002212 5.3e-08 62.4 70 51.4
Gohir.A09G219600 Gossypium hirsutum HOM05D001363 ORTHO05D002212 5.3e-08 62.4 79 45.6
FvH4_4g03620 Fragaria vesca HOM05D001363 ORTHO05D002212 7.0e-08 62.0 70 51.4
FAN12G0492 Fragaria x ananassa HOM05D001363 ORTHO05D002212 7.0e-08 62.0 70 51.4
FAN22G0300 Fragaria x ananassa HOM05D001363 ORTHO05D002212 7.0e-08 62.0 70 51.4
RcHm_v2.0_Chr4g0392991 Rosa chinensis HOM05D001363 ORTHO05D002212 7.0e-08 62.0 70 51.4
RcHm_v2.0_Chr4g0393481 Rosa chinensis HOM05D001363 ORTHO05D002212 7.0e-08 62.0 70 51.4
Aa31LG8G9380 Aethionema arabicum HOM05D001363 ORTHO05D002212 9.1e-08 61.6 123 35.0
BcaB03g14645 Brassica carinata HOM05D001363 ORTHO05D002212 1.2e-07 61.2 67 52.2
BcaB04g20490 Brassica carinata HOM05D001363 ORTHO05D002212 1.2e-07 61.2 67 52.2
BcaC09g49214 Brassica carinata HOM05D001363 ORTHO05D002212 1.2e-07 61.2 67 52.2
A01p32310 Brassica napus HOM05D001363 ORTHO05D002212 1.2e-07 61.2 67 52.2
C01p41330 Brassica napus HOM05D001363 ORTHO05D002212 1.2e-07 61.2 67 52.2
BolC1t04092H Brassica oleracea HOM05D001363 ORTHO05D002212 1.2e-07 61.2 67 52.2
BraA01t03357Z Brassica rapa HOM05D001363 ORTHO05D002212 1.2e-07 61.2 67 52.2
Thhalv10021068m.g Eutrema salsugineum HOM05D001363 ORTHO05D002212 1.2e-07 61.2 67 52.2
FAN17G1407 Fragaria x ananassa HOM05D001363 ORTHO05D002212 1.2e-07 61.2 70 51.4
RcHm_v2.0_Chr4g0391091 Rosa chinensis HOM05D001363 ORTHO05D002212 1.2e-07 61.2 70 51.4
Sp3g20580 Schrenkiella parvula HOM05D001363 ORTHO05D002212 1.2e-07 61.2 67 52.2
AL3G37220 Arabidopsis lyrata HOM05D001363 ORTHO05D002212 1.5e-07 60.8 67 52.2
MD16G1200300 Malus domestica HOM05D001363 ORTHO05D002212 1.5e-07 60.8 70 50.0
RhsimUnG0023700 Rhododendron simsii HOM05D001363 ORTHO05D002212 1.5e-07 60.8 67 52.2
RhsimUnG0184600 Rhododendron simsii HOM05D001363 ORTHO05D002212 1.5e-07 60.8 67 52.2
FAN17G1768 Fragaria x ananassa HOM05D002547 ORTHO05D002649 2.0e-07 60.5 67 52.2
THA.LOC104803046 Tarenaya hassleriana HOM05D001363 ORTHO05D002212 2.0e-07 60.5 67 52.2
THA.LOC104804919 Tarenaya hassleriana HOM05D001363 ORTHO05D002212 2.0e-07 60.5 67 52.2
THA.LOC104808576 Tarenaya hassleriana HOM05D001363 ORTHO05D002212 2.0e-07 60.5 67 52.2
VMungo0720G0234 Vigna mungo HOM05D001363 ORTHO05D002212 2.0e-07 60.5 67 52.2
GSVIVG01018051001 Vitis vinifera HOM05D001363 ORTHO05D002212 2.0e-07 60.5 67 52.2
Lj5g0010655 Lotus japonicus HOM05D001363 ORTHO05D002212 2.6e-07 60.1 67 52.2
Manes.03G172700 Manihot esculenta HOM05D001363 ORTHO05D002212 2.6e-07 60.1 67 50.7
PSO210G1487 Papaver somniferum HOM05D001363 ORTHO05D002212 2.6e-07 60.1 67 50.7
PSO461G0042 Papaver somniferum HOM05D001363 ORTHO05D002212 2.6e-07 60.1 67 50.7
PGR142G0038 Punica granatum HOM05D001363 ORTHO05D002212 2.6e-07 60.1 67 50.7
CARHR098810 Cardamine hirsuta HOM05D001363 ORTHO05D002212 3.4e-07 59.7 67 50.7
CARHR265640 Cardamine hirsuta HOM05D001363 ORTHO05D002212 3.4e-07 59.7 67 50.7
Prupe.1G022500 Prunus persica HOM05D001363 ORTHO05D002212 3.4e-07 59.7 70 48.6
Carub.0003s2301 Capsella rubella HOM05D001363 ORTHO05D002212 4.5e-07 59.3 67 49.3
DCAR_002364 Daucus carota HOM05D001363 ORTHO05D002212 4.5e-07 59.3 64 51.6
Gohir.D09G221800 Gossypium hirsutum HOM05D001363 ORTHO05D002212 4.5e-07 59.3 66 50.0
Medtr5g042180 Medicago truncatula HOM05D002036 ORTHO05D001913 4.5e-07 59.3 58 55.2
Phvul.007G062500 Phaseolus vulgaris HOM05D001363 ORTHO05D002212 4.5e-07 59.3 56 57.1
QL06p000836 Quercus lobata HOM05D001363 ORTHO05D002212 4.5e-07 59.3 67 50.7
Dinv44580 Davidia involucrata HOM05D001363 ORTHO05D002212 5.9e-07 58.9 61 52.5
Duzib151G0676 Durio zibethinus HOM05D001363 ORTHO05D002212 5.9e-07 58.9 66 50.0
Gohir.A02G034500 Gossypium hirsutum HOM05D001363 ORTHO05D002212 5.9e-07 58.9 61 52.5
Gorai.005G045700 Gossypium raimondii HOM05D001363 ORTHO05D002212 5.9e-07 58.9 61 52.5
HanXRQChr03g0062511 Helianthus annuus HOM05D001363 ORTHO05D002212 5.9e-07 58.9 61 52.5
Lsat_1_v5_gn_7_66001 Lactuca sativa HOM05D001363 ORTHO05D002212 5.9e-07 58.9 61 52.5
Lalb_Chr21g0304801 Lupinus albus HOM05D001363 ORTHO05D002212 5.9e-07 58.9 56 57.1
Nitab4.5_0002652g0020 Nicotiana tabacum HOM05D001363 ORTHO05D002212 5.9e-07 58.9 61 52.5
Nitab4.5_0007166g0010 Nicotiana tabacum HOM05D001363 ORTHO05D002212 5.9e-07 58.9 61 52.5
Peaxi162Scf00316g00323 Petunia axillaris HOM05D001363 ORTHO05D002212 5.9e-07 58.9 61 52.5
arahy.Tifrunner.gnm1.ann1.MX9883 Arachis hypogaea HOM05D001363 ORTHO05D002212 7.7e-07 58.5 56 55.4
arahy.Tifrunner.gnm1.ann1.QPK5VU Arachis hypogaea HOM05D001363 ORTHO05D002212 7.7e-07 58.5 56 55.4
Ca_10819_v3 Cicer arietinum L. HOM05D001363 ORTHO05D002212 7.7e-07 58.5 67 50.7
Ca_28386_v3 Cicer arietinum L. HOM05D001363 ORTHO05D002212 7.7e-07 58.5 67 50.7
Duzib212G0488 Durio zibethinus HOM05D001363 ORTHO05D002212 7.7e-07 58.5 69 47.8
Medtr1g102670 Medicago truncatula HOM05D001363 ORTHO05D002212 7.7e-07 58.5 67 50.7
Psat6g203440 Pisum sativum HOM05D001363 ORTHO05D002212 7.7e-07 58.5 67 50.7
TAR636G1108 Trochodendron aralioides HOM05D001363 ORTHO05D002212 7.7e-07 58.5 56 55.4
BcaC05g27967 Brassica carinata HOM05D013534 ORTHO05D027110 1.0e-06 58.2 136 33.8
C05p39750 Brassica napus HOM05D013534 ORTHO05D027110 1.0e-06 58.2 136 33.8
BolC5t32717H Brassica oleracea HOM05D013534 ORTHO05D027110 1.0e-06 58.2 136 33.8
ECA240G4262 Erigeron canadensis HOM05D001363 ORTHO05D002212 1.0e-06 58.2 61 50.8
MELO3C006496.2 Cucumis melo HOM05D001363 ORTHO05D002212 1.3e-06 57.8 61 50.8
CSS0014402 Camellia sinensis var. sinensis HOM05D001363 ORTHO05D002212 1.7e-06 57.4 61 50.8
Cpa.g.sc44.128 Carica papaya HOM05D001363 ORTHO05D002212 1.7e-06 57.4 56 55.4
CDE10G0279 Ceratophyllum demersum HOM05D001363 ORTHO05D002212 1.7e-06 57.4 56 51.8
Nn1g02467 Nelumbo nucifera HOM05D001363 ORTHO05D002212 1.7e-06 57.4 56 55.4
SalBow2G1003 Salvia bowleyana HOM05D001363 ORTHO05D002212 1.7e-06 57.4 61 50.8
Solyc09g082790.4 Solanum lycopersicum HOM05D001363 ORTHO05D002212 1.7e-06 57.4 61 50.8
Sopen09g031640 Solanum pennellii HOM05D001363 ORTHO05D002212 1.7e-06 57.4 61 50.8
PGSC0003DMG400030167 Solanum tuberosum HOM05D001363 ORTHO05D002212 1.7e-06 57.4 61 50.8
SGA_v2.0_scaffold191G40421 Striga asiatica HOM05D001363 ORTHO05D002212 1.7e-06 57.4 61 50.8
TPR.G26112 Trifolium pratense HOM05D001363 ORTHO05D002212 1.7e-06 57.4 67 49.3
TWI09G0463 Tripterygium wilfordii HOM05D001363 ORTHO05D002212 1.7e-06 57.4 50 58.0
Ah.04g154310 Amaranthus hybridus HOM05D001363 ORTHO05D002212 2.2e-06 57.0 61 50.8
Ciclev10006682m.g Citrus clementina HOM05D001363 ORTHO05D002212 2.2e-06 57.0 67 49.3
Lj6A646T83 Lonicera japonica HOM05D001363 ORTHO05D002212 2.2e-06 57.0 61 50.8
Thecc.04G239600 Theobroma cacao HOM05D001363 ORTHO05D002212 2.2e-06 57.0 66 48.5
TWI53G1709 Tripterygium wilfordii HOM05D001363 ORTHO05D002212 2.2e-06 57.0 64 50.0
Zm00001eb163340 Zea mays HOM05D001363 ORTHO05D002212 2.2e-06 57.0 56 53.6
Atru.chr4.2332 Acer truncatum HOM05D001363 ORTHO05D002212 2.9e-06 56.6 67 49.3
Atru.chr4.2334 Acer truncatum HOM05D001363 ORTHO05D002212 2.9e-06 56.6 67 49.3
CANSAT78G1246 Cannabis sativa HOM05D001363 ORTHO05D002212 2.9e-06 56.6 67 47.8
COL.COLO4_21574 Corchorus olitorius HOM05D001363 ORTHO05D002212 2.9e-06 56.6 66 48.5
Oeu017766.1 Olea europaea HOM05D001363 ORTHO05D002212 2.9e-06 56.6 61 49.2
Os11g0146800 Oryza sativa ssp. japonica HOM05D001363 ORTHO05D002212 2.9e-06 56.6 56 51.8
Os12g0143800 Oryza sativa ssp. japonica HOM05D001363 ORTHO05D002212 2.9e-06 56.6 56 51.8
Sc13g0004780 Simmondsia chinensis HOM05D001363 ORTHO05D002212 2.9e-06 56.6 61 49.2
ClCG05G004820 Citrullus lanatus HOM05D001363 ORTHO05D002212 3.8e-06 56.2 61 49.2
CsaV3_3G012860 Cucumis sativus L. HOM05D001363 ORTHO05D002212 3.8e-06 56.2 61 49.2
Potri.008G158500 Populus trichocarpa HOM05D001363 ORTHO05D002212 3.8e-06 56.2 67 50.7
Sabra08G0120800 Salix brachista HOM05D001363 ORTHO05D002212 3.8e-06 56.2 67 50.7
Sed0025938 Sechium edule HOM05D001363 ORTHO05D002212 3.8e-06 56.2 61 49.2
BcaC05g27973 Brassica carinata HOM05D013534 ORTHO05D095849 5.0e-06 55.8 136 33.1
C05p39790 Brassica napus HOM05D013534 ORTHO05D027110 5.0e-06 55.8 136 33.1
BolC5t32722H Brassica oleracea HOM05D013534 ORTHO05D105398 5.0e-06 55.8 136 33.1
Aqoxy2G03469 Aquilegia oxysepala HOM05D001363 ORTHO05D002212 6.5e-06 55.5 56 53.6
BcaB06g26403 Brassica carinata HOM05D001363 ORTHO05D002212 6.5e-06 55.5 56 53.6
AUR62013971 Chenopodium quinoa HOM05D001363 ORTHO05D002212 6.5e-06 55.5 61 50.8
AUR62034680 Chenopodium quinoa HOM05D001363 ORTHO05D002212 6.5e-06 55.5 61 50.8
Migut.G00388 Erythranthe guttata HOM05D001363 ORTHO05D002212 6.5e-06 55.5 61 49.2
SGA_v2.0_scaffold353G49716 Striga asiatica HOM05D001363 ORTHO05D002212 6.5e-06 55.5 61 49.2
vmacro15377 Vaccinium macrocarpon HOM05D001363 ORTHO05D002212 6.5e-06 55.5 61 49.2
vmacro15381 Vaccinium macrocarpon HOM05D001363 ORTHO05D002212 6.5e-06 55.5 64 48.4
AUR62005320 Chenopodium quinoa HOM05D001363 ORTHO05D002212 8.5e-06 55.1 58 53.4
MBI11_g21320_MAGBIO Magnolia biondii HOM05D001363 ORTHO05D002212 8.5e-06 55.1 56 51.8


User provided reference genes

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