Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 1.1e-219 766.5 430 100.0
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 1.1e-219 766.5 430 100.0
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 1.1e-219 766.5 430 100.0
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 2.2e-193 679.1 435 90.8
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 5.0e-193 677.9 435 90.6
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 7.7e-178 627.5 439 85.6
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 1.8e-150 536.6 446 73.3
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 2.2e-148 529.6 446 73.3
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 3.3e-144 515.8 446 72.4
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 2.8e-143 512.7 440 73.4
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 1.5e-136 490.3 430 71.2
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 4.3e-136 488.8 444 72.1
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 6.2e-135 485.0 437 70.5
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 7.5e-133 478.0 432 69.7
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 2.9e-132 476.1 433 69.7
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 1.6e-130 470.3 439 69.2
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 3.0e-113 412.9 437 61.8
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 1.1e-104 384.4 467 54.4
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 5.6e-104 382.1 463 55.9
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 2.8e-103 379.8 430 59.1
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 9.0e-102 374.8 443 54.6
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 1.1e-99 367.9 449 54.8
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 4.2e-99 365.9 457 54.9
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 5.1e-97 359.0 441 54.9
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 1.5e-96 357.5 482 50.0
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 1.5e-96 357.5 481 52.0
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.2e-90 337.8 457 50.3
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 9.6e-88 328.2 466 49.1
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 2.4e-86 323.6 441 50.3
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 2.0e-85 320.5 461 48.8
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 5.8e-85 318.9 435 49.7
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 1.0e-84 318.2 469 46.9
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 3.8e-84 316.2 443 49.0
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 3.8e-84 316.2 443 49.0
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 6.5e-84 315.5 448 49.1
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 4.2e-83 312.8 473 46.9
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 1.3e-81 307.8 451 50.6
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 2.3e-81 307.0 459 47.5
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 3.9e-81 306.2 438 47.9
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 5.1e-81 305.8 449 49.9
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 5.1e-81 305.8 436 48.2
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 5.1e-81 305.8 474 45.4
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 1.5e-80 304.3 475 45.7
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 1.5e-80 304.3 460 44.6
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 1.5e-80 304.3 461 45.8
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 1.9e-80 303.9 469 45.8
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 3.3e-80 303.1 467 46.7
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 4.3e-80 302.8 454 46.7
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 1.3e-79 301.2 489 44.0
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 2.8e-79 300.1 485 45.2
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 2.8e-79 300.1 449 45.2
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 3.7e-79 299.7 472 44.5
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 3.7e-79 299.7 437 48.1
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 6.3e-79 298.9 452 47.6
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 8.2e-79 298.5 449 47.9
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 8.2e-79 298.5 451 46.1
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 1.1e-78 298.1 479 43.8
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.1e-78 298.1 457 46.2
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.1e-78 298.1 455 46.4
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 4.1e-78 296.2 443 46.7
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 5.3e-78 295.8 451 49.2
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 5.3e-78 295.8 457 46.2
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 6.9e-78 295.4 442 45.7
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 6.9e-78 295.4 444 46.8
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 9.0e-78 295.0 449 45.9
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 3.4e-77 293.1 448 45.8
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 4.5e-77 292.7 465 46.0
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.0e-76 291.6 446 46.4
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 1.3e-76 291.2 435 45.7
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 2.2e-76 290.4 462 45.9
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 2.9e-76 290.0 444 47.1
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 2.9e-76 290.0 466 47.6
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 3.8e-76 289.7 502 43.8
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 8.5e-76 288.5 444 44.4
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 1.9e-75 287.3 437 46.9
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 3.2e-75 286.6 465 44.9
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 4.2e-75 286.2 470 43.6
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 5.5e-75 285.8 445 45.4
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 6.1e-74 282.3 455 46.2
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 7.9e-74 282.0 467 43.7
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 7.9e-74 282.0 496 42.7
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 1.0e-73 281.6 439 46.0
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 1.8e-73 280.8 449 45.2
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.3e-73 280.4 460 44.3
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 3.0e-73 280.0 434 45.6
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 3.0e-73 280.0 465 44.7
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 1.1e-72 278.1 470 43.8
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 1.5e-72 277.7 437 46.2
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 2.0e-72 277.3 452 44.2
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 2.5e-72 276.9 470 43.6
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 3.3e-72 276.6 473 44.4
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 5.7e-72 275.8 469 43.1
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 7.4e-72 275.4 435 44.8
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 9.7e-72 275.0 457 43.8
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 1.3e-71 274.6 444 45.0
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 1.3e-71 274.6 487 41.3
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 2.2e-71 273.9 437 46.2
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 2.2e-71 273.9 431 45.7
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 3.7e-71 273.1 452 46.0
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 3.7e-71 273.1 452 44.7
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 4.8e-71 272.7 464 43.5
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 4.8e-71 272.7 430 45.3
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 3.1e-70 270.0 447 45.0
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 6.9e-70 268.9 461 43.6
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 1.2e-69 268.1 448 43.8
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 1.2e-69 268.1 528 39.6
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 2.6e-69 266.9 471 43.5
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 2.6e-69 266.9 468 43.2
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 2.6e-69 266.9 450 43.3
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 2.6e-69 266.9 478 42.1
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 4.5e-69 266.2 449 45.0
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 1.0e-68 265.0 499 40.5
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 1.0e-68 265.0 493 41.4
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 1.7e-68 264.2 501 41.1
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 2.2e-68 263.8 448 44.9
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 2.2e-68 263.8 447 43.0
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 2.9e-68 263.5 446 45.3
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 8.5e-68 261.9 410 44.4
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 1.1e-67 261.5 456 42.8
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 1.4e-67 261.2 444 43.2
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 1.9e-67 260.8 437 44.6
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 1.9e-67 260.8 380 46.6
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 2.5e-67 260.4 453 42.8
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 3.2e-67 260.0 436 45.0
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 3.2e-67 260.0 467 42.6
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 4.2e-67 259.6 450 42.2
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 1.2e-66 258.1 451 41.5
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 1.6e-66 257.7 483 41.2
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 4.7e-66 256.1 154 87.0
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 1.0e-65 255.0 480 41.2
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 5.1e-65 252.7 432 44.9
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 5.1e-65 252.7 432 44.9
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 1.5e-64 251.1 432 44.7
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 4.4e-64 249.6 462 42.0
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 9.7e-64 248.4 422 46.0
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 3.7e-63 246.5 486 39.7
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 1.8e-62 244.2 455 41.5
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 2.4e-62 243.8 459 42.0
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 3.5e-61 240.0 468 43.6
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 8.5e-60 235.3 235 58.7
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 1.5e-59 234.6 445 41.3
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 1.0e-57 228.4 441 40.6
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 3.9e-57 226.5 234 58.1
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 8.8e-57 225.3 482 39.6
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 7.4e-56 222.2 427 41.0
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 1.3e-52 211.5 463 38.7
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 1.5e-48 198.0 441 38.3
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 2.0e-48 197.6 491 36.5
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 9.1e-46 188.7 489 34.6
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 2.2e-44 184.1 101 91.1
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 4.2e-43 179.9 346 41.3
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 5.2e-41 172.9 434 35.7
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 4.4e-40 169.9 454 37.2
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 8.6e-36 155.6 459 36.2
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 1.9e-35 154.5 345 40.9
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 1.6e-34 151.4 88 88.6
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 2.8e-34 150.6 338 40.8
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 2.6e-32 144.1 121 66.9
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 2.6e-32 144.1 134 67.9
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 7.5e-32 142.5 134 67.2
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 8.3e-31 139.0 170 49.4
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 3.5e-29 133.7 126 62.7
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 3.5e-29 133.7 126 62.7
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 2.9e-28 130.6 479 29.6
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 2.5e-27 127.5 86 75.6
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 2.5e-19 100.9 418 30.1
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 2.3e-17 94.4 110 44.5
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 4.4e-16 90.1 480 26.7
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 7.1e-14 82.8 178 33.7
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 6.6e-12 76.3 71 56.3
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 8.6e-12 75.9 88 51.1
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 1.5e-11 75.1 127 44.1
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 3.3e-11 73.9 103 40.8
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 1.6e-10 71.6 112 42.9
unitig_0.g2557 Utricularia gibba HOM05D002258 ORTHO05D002539 6.8e-09 66.2 130 33.1
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 2.6e-08 64.3 115 49.6
unitig_88.g27675 Utricularia gibba HOM05D002258 ORTHO05D002539 7.6e-08 62.8 126 32.5
Cfa024721 Carpinus fangiana HOM05D003909 ORTHO05D121609 2.2e-07 61.2 122 35.2
MCO15G526 Micromonas commoda HOM05D002258 ORTHO05D002539 4.9e-07 60.1 134 29.9


User provided reference genes

Program Settings