Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 2.3e-73 278.9 150 100.0
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 2.1e-66 255.8 139 98.6
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 4.4e-48 194.9 125 87.2
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 3.5e-45 185.3 138 77.5
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 4.6e-45 184.9 139 77.0
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 2.3e-44 182.6 124 84.7
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.3e-36 156.8 136 71.3
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 3.9e-36 155.2 140 68.6
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 1.1e-33 147.1 128 69.5
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 3.1e-33 145.6 139 65.5
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 4.0e-33 145.2 140 66.4
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 9.0e-33 144.1 134 67.2
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 9.0e-33 144.1 134 67.2
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 2.0e-32 142.9 140 65.0
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 9.9e-32 140.6 135 67.4
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 3.8e-31 138.7 134 67.2
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 3.8e-31 138.7 134 67.2
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 7.9e-29 131.0 122 65.6
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 6.7e-28 127.9 129 62.8
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 3.5e-21 105.5 136 49.3
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 6.7e-20 101.3 126 52.4
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 9.7e-19 97.4 128 48.4
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 1.4e-17 93.6 114 48.2
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 1.8e-17 93.2 131 47.3
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 6.9e-17 91.3 118 44.1
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 1.2e-16 90.5 105 48.6
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 1.2e-16 90.5 142 42.3
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 2.0e-16 89.7 139 47.5
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 2.6e-16 89.4 133 42.1
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 2.6e-16 89.4 132 44.7
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 3.4e-16 89.0 127 47.2
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 3.4e-16 89.0 129 48.8
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 4.5e-16 88.6 132 50.0
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 7.6e-16 87.8 120 45.0
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 1.3e-15 87.0 127 42.5
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 3.8e-15 85.5 153 39.9
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 3.8e-15 85.5 129 41.1
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 3.8e-15 85.5 124 46.0
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 3.8e-15 85.5 114 47.4
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 5.0e-15 85.1 140 42.9
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 5.0e-15 85.1 136 42.6
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 6.5e-15 84.7 128 41.4
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 6.5e-15 84.7 82 56.1
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 6.5e-15 84.7 138 42.8
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 6.5e-15 84.7 115 43.5
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 6.5e-15 84.7 126 44.4
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 8.5e-15 84.3 103 47.6
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.1e-14 84.0 122 45.9
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 1.1e-14 84.0 125 43.2
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 1.1e-14 84.0 134 44.0
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 1.4e-14 83.6 135 41.5
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 1.4e-14 83.6 81 53.1
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 1.9e-14 83.2 113 46.9
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 3.2e-14 82.4 119 44.5
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 3.2e-14 82.4 138 44.9
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 4.2e-14 82.0 93 50.5
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 4.2e-14 82.0 113 46.9
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 5.5e-14 81.6 127 41.7
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 5.5e-14 81.6 128 39.1
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 7.2e-14 81.3 95 48.4
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 7.2e-14 81.3 95 48.4
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 9.3e-14 80.9 113 45.1
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 9.3e-14 80.9 129 44.2
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 9.3e-14 80.9 121 40.5
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 1.2e-13 80.5 126 43.7
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 1.6e-13 80.1 92 45.7
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 1.6e-13 80.1 142 40.1
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 2.1e-13 79.7 143 39.9
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 2.1e-13 79.7 125 45.6
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 2.7e-13 79.3 149 38.9
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 2.7e-13 79.3 119 42.9
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 2.7e-13 79.3 121 39.7
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 3.6e-13 79.0 132 41.7
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 3.6e-13 79.0 127 43.3
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 3.6e-13 79.0 147 36.1
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 3.6e-13 79.0 117 45.3
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 4.6e-13 78.6 92 50.0
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 4.6e-13 78.6 106 44.3
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 6.1e-13 78.2 127 43.3
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 7.9e-13 77.8 103 41.7
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 7.9e-13 77.8 147 36.1
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 7.9e-13 77.8 118 44.9
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 7.9e-13 77.8 128 42.2
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 1.0e-12 77.4 127 42.5
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 1.0e-12 77.4 130 36.2
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.4e-12 77.0 128 42.2
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 1.4e-12 77.0 134 39.6
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 1.4e-12 77.0 134 39.6
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 1.8e-12 76.6 132 36.4
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 1.8e-12 76.6 112 43.8
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 1.8e-12 76.6 80 50.0
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 2.3e-12 76.3 71 53.5
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 2.3e-12 76.3 143 38.5
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 2.3e-12 76.3 133 39.8
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 3.0e-12 75.9 105 41.9
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 3.9e-12 75.5 100 47.0
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 3.9e-12 75.5 129 44.2
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 5.1e-12 75.1 143 42.0
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 5.1e-12 75.1 119 40.3
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 6.7e-12 74.7 125 39.2
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 6.7e-12 74.7 115 41.7
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 6.7e-12 74.7 139 37.4
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 6.7e-12 74.7 127 37.8
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 6.7e-12 74.7 130 35.4
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 6.7e-12 74.7 127 39.4
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 8.8e-12 74.3 96 45.8
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 8.8e-12 74.3 133 35.3
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 1.1e-11 73.9 112 42.0
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 1.5e-11 73.6 119 40.3
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 1.9e-11 73.2 128 42.2
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 1.9e-11 73.2 152 37.5
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 1.9e-11 73.2 124 40.3
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 1.9e-11 73.2 134 39.6
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 2.5e-11 72.8 129 40.3
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 2.5e-11 72.8 124 38.7
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 3.3e-11 72.4 149 34.9
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 4.3e-11 72.0 124 41.9
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 4.3e-11 72.0 129 38.0
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 7.4e-11 71.2 92 44.6
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 9.7e-11 70.9 117 39.3
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 9.7e-11 70.9 130 40.8
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 1.3e-10 70.5 129 37.2
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 1.3e-10 70.5 131 40.5
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 1.3e-10 70.5 128 38.3
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 1.3e-10 70.5 114 43.0
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 1.7e-10 70.1 108 43.5
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 1.7e-10 70.1 129 40.3
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.2e-10 69.7 125 44.8
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 3.7e-10 68.9 63 65.1
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 3.7e-10 68.9 63 65.1
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 3.7e-10 68.9 63 65.1
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 3.7e-10 68.9 141 41.8
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 4.8e-10 68.6 117 38.5
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 6.3e-10 68.2 134 38.1
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 2.4e-09 66.2 58 58.6
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 3.1e-09 65.9 131 34.4
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 3.1e-09 65.9 132 40.9
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 4.1e-09 65.5 116 39.7
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 5.3e-09 65.1 117 40.2
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 5.3e-09 65.1 134 41.0
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 1.2e-08 63.9 123 35.0
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 1.5e-08 63.5 130 35.4
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 2.0e-08 63.2 132 39.4
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 2.0e-08 63.2 125 36.8
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 5.9e-08 61.6 130 35.4
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 1.0e-07 60.8 117 37.6
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 1.7e-07 60.1 95 38.9
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 2.2e-07 59.7 115 40.9
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 1.9e-06 56.6 131 35.1
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 9.4e-06 54.3 138 31.9


User provided reference genes

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