Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p60980 Brassica napus HOM05D002494 ORTHO05D002673 0.0e+00 1521.9 771 100.0
BraA05t22893Z Brassica rapa HOM05D002494 ORTHO05D002673 0.0e+00 1323.1 836 83.0
A05p41740 Brassica napus HOM05D002494 ORTHO05D002673 0.0e+00 1317.8 836 82.8
BcaC05g30043 Brassica carinata HOM05D002494 ORTHO05D002673 0.0e+00 1285.8 859 79.5
BcaC05g29801 Brassica carinata HOM05D002494 ORTHO05D002673 0.0e+00 1261.9 846 80.4
Sp3g05200 Schrenkiella parvula HOM05D002494 ORTHO05D002673 0.0e+00 1204.1 851 76.1
BcaB03g14668 Brassica carinata HOM05D002494 ORTHO05D002673 0.0e+00 1176.8 852 74.8
Thhalv10019892m.g Eutrema salsugineum HOM05D002494 ORTHO05D002673 0.0e+00 1165.2 853 73.7
A03p34620 Brassica napus HOM05D002494 ORTHO05D002673 0.0e+00 1161.7 852 73.7
BraA03t12638Z Brassica rapa HOM05D002494 ORTHO05D002673 0.0e+00 1161.7 852 73.7
C03p42080 Brassica napus HOM05D002494 ORTHO05D002673 0.0e+00 1158.7 852 73.7
BolC3t16488H Brassica oleracea HOM05D002494 ORTHO05D002673 0.0e+00 1158.3 852 73.8
BcaC05g30040 Brassica carinata HOM05D002494 ORTHO05D002673 0.0e+00 1130.5 845 72.5
AL3G17180 Arabidopsis lyrata HOM05D002494 ORTHO05D002673 0.0e+00 1105.1 854 70.5
Carub.0003s0571 Capsella rubella HOM05D002494 ORTHO05D002673 4.0e-310 1067.8 852 68.5
AT3G06290 Arabidopsis thaliana HOM05D002494 ORTHO05D002673 5.2e-310 1067.4 855 68.5
CARHR080780 Cardamine hirsuta HOM05D002494 ORTHO05D002673 5.8e-293 1010.7 825 68.0
Aa31LG5G16810 Aethionema arabicum HOM05D002494 ORTHO05D002673 3.8e-268 928.3 854 60.7
THA.LOC104818830 Tarenaya hassleriana HOM05D002494 ORTHO05D002673 1.2e-226 790.4 843 53.9
Cpa.g.sc16.69 Carica papaya HOM05D002494 ORTHO05D002673 1.3e-167 594.3 789 45.0
BcaB03g14661 Brassica carinata HOM05D002494 ORTHO05D002673 8.4e-167 591.7 561 61.1
Dinv38353 Davidia involucrata HOM05D002494 ORTHO05D002673 7.6e-160 568.5 810 42.7
Manes.03G187900 Manihot esculenta HOM05D002494 ORTHO05D002673 1.7e-159 567.4 789 43.6
MD13G1178600 Malus domestica HOM05D002494 ORTHO05D002673 1.8e-156 557.4 799 43.3
Actinidia40212 Actinidia chinensis HOM05D002494 ORTHO05D002673 1.9e-155 553.9 813 42.1
CSS0019247 Camellia sinensis var. sinensis HOM05D002494 ORTHO05D002673 1.6e-154 550.8 796 43.0
Potri.010G028200 Populus trichocarpa HOM05D002494 ORTHO05D002673 1.6e-154 550.8 793 42.5
MD16G1179800 Malus domestica HOM05D002494 ORTHO05D002673 8.1e-154 548.5 822 42.0
Prupe.1G147400 Prunus persica HOM05D002494 ORTHO05D002673 4.0e-153 546.2 816 40.8
Sabra10G0012600 Salix brachista HOM05D002494 ORTHO05D002673 1.3e-151 541.2 805 42.1
Lj6C665T16 Lonicera japonica HOM05D002494 ORTHO05D002673 4.9e-151 539.3 827 40.4
Ciclev10004135m.g Citrus clementina HOM05D002494 ORTHO05D002673 1.1e-150 538.1 811 41.2
Haze_01007 Corylus avellana HOM05D002494 ORTHO05D002673 1.4e-150 537.7 784 42.1
Cfa015542 Carpinus fangiana HOM05D002494 ORTHO05D002673 1.6e-149 534.3 784 42.2
CiPaw.02G089600 Carya illinoinensis HOM05D002494 ORTHO05D002673 3.5e-149 533.1 785 41.0
TWI09G0743 Tripterygium wilfordii HOM05D002494 ORTHO05D002673 6.0e-149 532.3 837 41.0
vmacro08242 Vaccinium macrocarpon HOM05D002494 ORTHO05D002673 7.9e-149 531.9 819 41.0
TAR365G0297 Trochodendron aralioides HOM05D002494 ORTHO05D002673 1.0e-148 531.6 789 43.3
Thecc.04G272000 Theobroma cacao HOM05D002494 ORTHO05D002673 6.7e-148 528.9 847 39.7
Dinv44457 Davidia involucrata HOM05D002494 ORTHO05D002673 1.1e-147 528.1 777 41.8
Gohir.D09G233100 Gossypium hirsutum HOM05D002494 ORTHO05D002673 1.5e-147 527.7 854 39.6
Gorai.006G256000 Gossypium raimondii HOM05D002494 ORTHO05D002673 3.3e-147 526.6 842 39.9
Oeu032696.1 Olea europaea HOM05D002494 ORTHO05D002673 6.2e-146 522.3 789 40.3
COL.COLO4_13973 Corchorus olitorius HOM05D002494 ORTHO05D002673 1.8e-145 520.8 847 39.4
Psat1g185440 Pisum sativum HOM05D002494 ORTHO05D002673 2.4e-145 520.4 823 41.3
Duzib212G0707 Durio zibethinus HOM05D002494 ORTHO05D002673 9.0e-145 518.5 843 38.8
CSS0005255 Camellia sinensis var. sinensis HOM05D002494 ORTHO05D002673 1.5e-144 517.7 785 41.9
DCAR_027134 Daucus carota HOM05D002494 ORTHO05D002673 7.6e-144 515.4 810 39.4
Rhsim04G0212900 Rhododendron simsii HOM05D002494 ORTHO05D002673 1.9e-142 510.8 829 39.2
Medtr2g020960 Medicago truncatula HOM05D002494 ORTHO05D002673 3.2e-142 510.0 782 40.5
CSS0038359 Camellia sinensis var. sinensis HOM05D002494 ORTHO05D002673 4.2e-142 509.6 785 41.4
RcHm_v2.0_Chr4g0419781 Rosa chinensis HOM05D002494 ORTHO05D002673 4.2e-142 509.6 836 39.6
CANSAT78G1223 Cannabis sativa HOM05D002494 ORTHO05D002673 2.7e-141 506.9 850 39.4
Nn3g21175 Nelumbo nucifera HOM05D002494 ORTHO05D002673 3.5e-141 506.5 811 39.1
TPR.G18023 Trifolium pratense HOM05D002494 ORTHO05D002673 7.9e-141 505.4 792 40.2
Cc03_g02770 Coffea canephora HOM05D002494 ORTHO05D002673 1.3e-140 504.6 791 39.1
Glyma.13G211900 Glycine max HOM05D002494 ORTHO05D002673 1.3e-140 504.6 781 40.6
Glyma.15G100800 Glycine max HOM05D002494 ORTHO05D002673 2.3e-140 503.8 783 40.2
Migut.G00286 Erythranthe guttata HOM05D002494 ORTHO05D002673 5.1e-140 502.7 793 40.5
FAN22G2205 Fragaria x ananassa HOM05D002494 ORTHO05D002673 3.3e-139 500.0 829 38.2
Peaxi162Scf00592g00111 Petunia axillaris HOM05D002494 ORTHO05D002673 7.4e-139 498.8 836 38.5
Eucgr.H03640 Eucalyptus grandis HOM05D002494 ORTHO05D002673 1.6e-138 497.7 846 39.1
SalBow2G0767 Salvia bowleyana HOM05D002494 ORTHO05D002673 3.7e-138 496.5 821 38.7
FAN17G1311 Fragaria x ananassa HOM05D002494 ORTHO05D002673 3.1e-137 493.4 835 38.1
VMungo0540G1417 Vigna mungo HOM05D002494 ORTHO05D002673 3.1e-137 493.4 810 40.5
Lj6g0008158 Lotus japonicus HOM05D002494 ORTHO05D002673 4.1e-137 493.0 786 40.8
arahy.Tifrunner.gnm1.ann1.2UVC2V Arachis hypogaea HOM05D002494 ORTHO05D002673 6.9e-137 492.3 802 39.0
Sc13g0003790 Simmondsia chinensis HOM05D002494 ORTHO05D002673 9.0e-137 491.9 851 38.1
MSTRG.3973 Avicennia marina HOM05D002494 ORTHO05D002673 1.2e-136 491.5 803 38.6
FAN12G0871 Fragaria x ananassa HOM05D002494 ORTHO05D002673 4.5e-136 489.6 833 38.4
Sopen12g016080 Solanum pennellii HOM05D002494 ORTHO05D002673 1.0e-135 488.4 832 38.7
Phvul.006G158000 Phaseolus vulgaris HOM05D002494 ORTHO05D002673 3.8e-135 486.5 815 39.5
PGR004G0605 Punica granatum HOM05D002494 ORTHO05D002673 5.0e-135 486.1 849 38.4
FvH4_4g13920 Fragaria vesca HOM05D002494 ORTHO05D002673 2.5e-134 483.8 833 38.1
arahy.Tifrunner.gnm1.ann1.I64MY8 Arachis hypogaea HOM05D002494 ORTHO05D002673 9.4e-134 481.9 808 38.9
PSO170G5860 Papaver somniferum HOM05D002494 ORTHO05D002673 1.4e-132 478.0 807 37.9
CAN.G290.14 Capsicum annuum HOM05D002494 ORTHO05D002673 1.8e-132 477.6 835 37.5
Lalb_Chr15g0087191 Lupinus albus HOM05D002494 ORTHO05D002673 5.1e-132 476.1 818 38.4
PSO302G0174 Papaver somniferum HOM05D002494 ORTHO05D002673 5.1e-132 476.1 814 37.7
Aqoxy2G03189 Aquilegia oxysepala HOM05D002494 ORTHO05D002673 1.1e-131 474.9 810 37.9
Atru.chr4.2700 Acer truncatum HOM05D002494 ORTHO05D002673 3.1e-129 466.8 699 42.5
Sed0003410 Sechium edule HOM05D002494 ORTHO05D002673 5.9e-128 462.6 806 37.7
SHI00347 Sapria himalayana HOM05D002494 ORTHO05D002673 7.2e-126 455.7 751 38.9
Hund09628 Selenicereus undatus HOM05D002494 ORTHO05D002673 1.0e-124 451.8 870 35.9
Actinidia23457 Actinidia chinensis HOM05D002494 ORTHO05D002673 2.3e-124 450.7 576 45.7
ClCG05G005560 Citrullus lanatus HOM05D002494 ORTHO05D002673 3.9e-124 449.9 867 36.8
SGA_v2.0_scaffold237G43852 Striga asiatica HOM05D002494 ORTHO05D002673 3.9e-124 449.9 805 36.0
AUR62024657 Chenopodium quinoa HOM05D002494 ORTHO05D002673 1.1e-123 448.4 848 35.3
AUR62011813 Chenopodium quinoa HOM05D002494 ORTHO05D002673 1.5e-123 448.0 853 35.4
CsaV3_3G013900 Cucumis sativus L. HOM05D002494 ORTHO05D002673 7.0e-121 439.1 855 36.0
Nitab4.5_0001505g0010 Nicotiana tabacum HOM05D002494 ORTHO05D002673 2.6e-120 437.2 817 37.6
EL10As5g23527 Beta vulgaris HOM05D002494 ORTHO05D002673 5.9e-120 436.0 839 35.4
Nitab4.5_0000010g0140 Nicotiana tabacum HOM05D002494 ORTHO05D002673 3.0e-116 423.7 791 37.2
ATR0626G271 Amborella trichopoda HOM05D002494 ORTHO05D002673 3.9e-116 423.3 784 36.9
MELO3C006582.2 Cucumis melo HOM05D002494 ORTHO05D002673 3.3e-115 420.2 895 33.9
Ah.02g112310 Amaranthus hybridus HOM05D002494 ORTHO05D002673 8.2e-114 415.6 839 32.7
ECA233G5784 Erigeron canadensis HOM05D002494 ORTHO05D002673 2.5e-110 404.1 817 35.6
HanXRQChr09g0251551 Helianthus annuus HOM05D002494 ORTHO05D002673 4.0e-108 396.7 761 37.1
Lsat_1_v5_gn_6_69301 Lactuca sativa HOM05D002494 ORTHO05D002673 8.2e-106 389.0 778 34.7
Ca_00591_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 4.5e-104 383.3 440 46.4
unitig_748.g8564 Utricularia gibba HOM05D002494 ORTHO05D002673 2.2e-103 380.9 542 41.0
Gohir.A09G232000 Gossypium hirsutum HOM05D002494 ORTHO05D002673 8.0e-101 372.5 739 36.3
Zm00001eb329290 Zea mays HOM05D002494 ORTHO05D002673 1.3e-98 365.2 857 30.7
Zm00001eb329320 Zea mays HOM05D002494 ORTHO05D002673 2.2e-98 364.4 858 30.7
GSVIVG01017853001 Vitis vinifera HOM05D002494 ORTHO05D002673 3.7e-98 363.6 616 40.1
Zm00001eb329350 Zea mays HOM05D002494 ORTHO05D002673 2.0e-88 331.3 503 36.8
BcaB03g14660 Brassica carinata HOM05D002494 ORTHO05D002673 8.3e-82 309.3 168 90.5
CDE04G2572 Ceratophyllum demersum HOM05D002494 ORTHO05D002673 6.6e-79 299.7 800 31.4
Zm00001eb329310 Zea mays HOM05D002494 ORTHO05D002673 1.3e-53 215.7 301 37.2
Pp3c3_29590 Physcomitrium patens HOM05D002494 ORTHO05D002673 1.1e-52 212.6 852 25.6
SEGI_28422 Sequoiadendron giganteum HOM05D002494 ORTHO05D002673 2.4e-52 211.5 609 27.6
HPP92_013671 Vanilla planifolia HOM05D002494 ORTHO05D002673 5.3e-52 210.3 532 31.8
Mapoly0096s0011 Marchantia polymorpha HOM05D002494 ORTHO05D002673 3.8e-50 204.1 805 25.5
AagrBONN_evm.TU.Sc2ySwM_362.842 Anthoceros agrestis HOM05D002494 ORTHO05D002673 1.3e-47 195.7 865 24.9
Solyc12g035670.3 Solanum lycopersicum HOM05D002494 ORTHO05D002673 2.7e-40 171.4 390 34.4
HPP92_013672 Vanilla planifolia HOM05D002494 ORTHO05D002673 1.5e-38 165.6 250 38.0
BolC5t34753H Brassica oleracea HOM05D002494 ORTHO05D002673 3.4e-35 154.5 75 98.7
Ca_00589_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 1.4e-28 132.5 325 33.8
CBR_g52314 Chara braunii HOM05D002494 ORTHO05D002673 2.6e-27 128.3 761 21.7
HPP92_013653 Vanilla planifolia HOM05D002494 ORTHO05D002673 6.3e-21 107.1 348 29.6
Zm00001eb302530 Zea mays HOM05D002494 ORTHO05D002673 6.3e-21 107.1 181 34.3
Atru.chr4.2699 Acer truncatum HOM05D002494 ORTHO05D002673 1.4e-20 105.9 107 51.4
Actinidia23456 Actinidia chinensis HOM05D002494 ORTHO05D002673 4.5e-19 100.9 111 47.7
Ca_30832_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 3.8e-18 97.8 129 41.9
Psat4g010920 Pisum sativum HOM05D002494 ORTHO05D002673 1.2e-16 92.8 101 46.5
Zm00001eb302540 Zea mays HOM05D002494 ORTHO05D002673 2.1e-16 92.0 104 40.4
Zm00001eb160540 Zea mays HOM05D002494 ORTHO05D002673 3.6e-16 91.3 104 40.4
TPR.G14187 Trifolium pratense HOM05D002494 ORTHO05D002673 3.1e-12 78.2 82 48.8
Zm00001eb094450 Zea mays HOM05D002494 ORTHO05D002673 4.5e-11 74.3 84 42.9
Zm00001eb329300 Zea mays HOM05D002494 ORTHO05D002673 7.7e-11 73.6 101 40.6
Zm00001eb171280 Zea mays HOM05D002494 ORTHO05D002673 7.9e-08 63.5 70 37.1


User provided reference genes

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