Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 2.4e-201 705.3 359 100.0
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 1.7e-199 699.1 359 99.7
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 2.3e-199 698.7 359 98.3
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 4.3e-198 694.5 359 98.1
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 1.4e-196 689.5 384 93.2
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 3.3e-190 668.3 359 95.0
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 4.0e-188 661.4 359 93.6
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 4.9e-186 654.4 362 92.8
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 4.9e-186 654.4 359 93.6
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 1.3e-183 646.4 360 92.5
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 2.2e-178 629.0 359 89.4
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 3.8e-178 628.2 367 90.5
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 1.7e-170 602.8 359 85.5
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 3.8e-138 495.4 366 69.7
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 4.2e-137 491.9 366 68.6
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 4.7e-136 488.4 366 69.1
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.3e-135 486.1 365 69.3
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 3.9e-135 485.3 365 69.3
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 8.8e-135 484.2 366 68.3
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 1.1e-134 483.8 359 69.1
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 1.1e-134 483.8 366 68.9
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 2.0e-134 483.0 365 69.0
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 3.3e-134 482.3 366 67.5
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 3.3e-134 482.3 365 68.8
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 4.4e-134 481.9 365 68.5
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 5.7e-134 481.5 364 68.4
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 5.7e-134 481.5 364 69.0
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 3.7e-133 478.8 364 69.0
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 4.8e-133 478.4 365 68.5
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 6.3e-133 478.0 364 68.1
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 2.4e-132 476.1 364 67.0
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 3.1e-132 475.7 365 68.5
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 3.1e-132 475.7 365 68.5
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 3.1e-132 475.7 365 68.5
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 4.1e-132 475.3 376 66.2
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 4.1e-132 475.3 366 68.6
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 2.0e-131 473.0 387 64.1
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 4.5e-131 471.9 364 67.3
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 2.2e-130 469.5 366 66.4
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 2.9e-130 469.2 366 67.5
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 3.8e-130 468.8 366 67.8
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 5.0e-130 468.4 367 67.8
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 5.0e-130 468.4 366 67.5
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 6.5e-130 468.0 365 66.0
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 8.5e-130 467.6 367 66.5
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 1.4e-129 466.8 366 66.7
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 1.4e-129 466.8 366 66.7
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 2.5e-129 466.1 366 67.2
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 7.2e-129 464.5 367 66.5
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 9.4e-129 464.2 382 64.4
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 4.7e-128 461.8 369 65.3
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 4.7e-128 461.8 366 66.7
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 6.1e-128 461.5 364 64.8
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 5.2e-127 458.4 364 64.6
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 5.2e-127 458.4 362 66.0
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 6.7e-127 458.0 366 65.6
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 8.8e-127 457.6 366 65.8
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 1.5e-126 456.8 367 65.7
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 2.0e-126 456.4 369 65.6
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 2.6e-126 456.1 364 64.6
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 3.3e-126 455.7 366 64.2
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.3e-126 455.7 368 66.8
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 9.7e-126 454.1 363 64.5
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 1.3e-125 453.8 364 64.0
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 2.2e-125 453.0 365 64.9
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 6.3e-125 451.4 365 64.1
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 6.3e-125 451.4 364 64.0
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 3.1e-124 449.1 371 63.9
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 1.6e-123 446.8 361 65.9
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 1.0e-122 444.1 360 63.9
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 1.3e-122 443.7 366 64.5
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 2.2e-122 443.0 360 63.9
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 2.5e-121 439.5 367 64.9
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 3.2e-121 439.1 366 64.2
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 3.6e-120 435.6 365 63.6
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 8.0e-120 434.5 365 63.3
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 8.0e-120 434.5 363 64.2
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 3.0e-119 432.6 364 62.6
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 4.0e-119 432.2 365 63.8
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 3.7e-117 425.6 339 64.9
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.7e-117 425.6 360 64.2
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 6.3e-117 424.9 308 70.1
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 6.3e-117 424.9 365 62.7
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 5.3e-116 421.8 366 63.7
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 1.2e-115 420.6 369 61.0
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 1.6e-115 420.2 358 62.6
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 6.5e-114 414.8 389 59.1
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.1e-113 414.1 365 62.5
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 1.9e-113 413.3 367 60.8
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 5.2e-111 405.2 364 61.3
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 6.3e-109 398.3 378 56.1
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 2.9e-106 389.4 370 57.0
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 1.6e-104 383.6 318 64.2
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 1.1e-100 370.9 359 58.5
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 2.4e-100 369.8 334 61.1
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 1.6e-99 367.1 304 64.5
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 4.5e-99 365.5 365 56.4
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 1.0e-98 364.4 360 55.8
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 2.3e-98 363.2 387 50.1
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 1.5e-97 360.5 364 56.6
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 4.3e-97 359.0 379 54.4
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 1.2e-96 357.5 359 55.4
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 5.0e-90 335.5 378 54.8
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.9e-89 333.6 340 52.1
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 2.5e-89 333.2 279 62.4
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 6.0e-83 312.0 262 64.1
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 2.3e-82 310.1 309 54.7
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 2.5e-81 306.6 194 85.1
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 1.7e-77 293.9 383 42.3
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 5.1e-74 282.3 361 45.2
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 4.4e-70 269.2 366 46.2
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 1.7e-66 257.3 428 39.5
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 1.1e-63 248.1 279 51.6
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 2.9e-61 240.0 166 73.5
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 1.1e-60 238.0 166 72.3
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 1.2e-59 234.6 303 47.5
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 7.8e-59 231.9 196 61.2
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 6.2e-56 222.2 203 57.6
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 3.1e-55 219.9 199 58.8
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 5.4e-52 209.1 215 54.0
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 3.8e-45 186.4 161 60.9
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 4.2e-44 183.0 122 75.4
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.0e-42 178.3 122 73.8
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 8.7e-42 175.3 144 63.9
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 2.4e-39 167.2 167 56.9
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 4.2e-36 156.4 304 38.5
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 2.1e-35 154.1 200 44.5
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 2.7e-35 153.7 176 45.5
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 3.5e-35 153.3 139 60.4
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 5.1e-34 149.4 245 40.0
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.6e-32 144.4 122 63.1
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 5.0e-29 132.9 139 57.6
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 2.7e-27 127.1 139 51.8
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 8.5e-21 105.5 114 48.2
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 3.2e-20 103.6 385 23.9
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.6e-19 101.3 72 66.7
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 7.9e-19 99.0 79 65.8
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.5e-17 94.7 84 58.3
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.7e-13 81.3 77 53.2
MCO12G220 Micromonas commoda HOM05D005334 ORTHO05D006560 1.7e-13 81.3 398 22.6
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 4.7e-11 73.2 142 33.1


User provided reference genes

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