Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p49400 Brassica napus HOM05D006900 ORTHO05D008651 8.0e-200 701.0 631 100.0
A05p32690 Brassica napus HOM05D006900 ORTHO05D008651 2.3e-194 682.9 631 98.4
BraA05t22092Z Brassica rapa HOM05D006900 ORTHO05D008651 3.0e-194 682.6 631 98.4
BcaC05g28835 Brassica carinata HOM05D006900 ORTHO05D008651 2.5e-193 679.5 632 98.4
BolC5t33686H Brassica oleracea HOM05D006900 ORTHO05D008651 2.5e-193 679.5 632 98.4
BcaB06g25797 Brassica carinata HOM05D006900 ORTHO05D008651 7.5e-182 641.3 635 96.1
Thhalv10020271m.g Eutrema salsugineum HOM05D006900 ORTHO05D008651 3.8e-165 585.9 647 90.3
Sp3g15260 Schrenkiella parvula HOM05D006900 ORTHO05D008651 4.8e-160 568.9 652 88.7
CARHR092290 Cardamine hirsuta HOM05D006900 ORTHO05D008651 6.7e-154 548.5 652 87.6
Carub.0003s1679 Capsella rubella HOM05D006900 ORTHO05D008651 6.4e-149 531.9 651 87.3
AL3G30020 Arabidopsis lyrata HOM05D006900 ORTHO05D008651 1.9e-148 530.4 657 86.1
Aa31LG8G4070 Aethionema arabicum HOM05D006900 ORTHO05D008651 5.1e-138 495.7 659 80.9
THA.LOC104820304 Tarenaya hassleriana HOM05D006900 ORTHO05D008651 5.7e-113 412.5 628 77.7
AT3G17040 Arabidopsis thaliana HOM05D006900 ORTHO05D008651 2.8e-96 357.1 274 77.0
GSVIVG01034997001 Vitis vinifera HOM05D006900 ORTHO05D008651 2.2e-88 330.9 639 71.4
Duzib212G0988 Durio zibethinus HOM05D006900 ORTHO05D008651 4.9e-88 329.7 588 74.5
COL.COLO4_34620 Corchorus olitorius HOM05D006900 ORTHO05D008651 7.0e-87 325.9 583 74.4
CSS0034541 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 3.5e-86 323.6 623 72.1
Prupe.1G117800 Prunus persica HOM05D006900 ORTHO05D008651 4.5e-86 323.2 632 69.9
TWI09G0824 Tripterygium wilfordii HOM05D006900 ORTHO05D008651 5.9e-86 322.8 633 70.9
Gohir.D10G178700 Gossypium hirsutum HOM05D006900 ORTHO05D008651 2.9e-85 320.5 633 70.5
Gorai.011G199800 Gossypium raimondii HOM05D006900 ORTHO05D008651 5.0e-85 319.7 633 70.5
Hma1.2p1_0013F.1_g008570 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 5.0e-85 319.7 642 69.9
MD13G1154800 Malus domestica HOM05D006900 ORTHO05D008651 5.0e-85 319.7 625 70.6
Gohir.A10G171600 Gossypium hirsutum HOM05D006900 ORTHO05D008651 8.6e-85 318.9 629 71.2
Actinidia13360 Actinidia chinensis HOM05D006900 ORTHO05D008651 1.9e-84 317.8 578 75.4
Peaxi162Scf00681g00223 Petunia axillaris HOM05D006900 ORTHO05D008651 1.9e-84 317.8 596 73.7
arahy.Tifrunner.gnm1.ann1.88EKIY Arachis hypogaea HOM05D006900 ORTHO05D008651 3.3e-84 317.0 564 77.5
Cfa015319 Carpinus fangiana HOM05D006900 ORTHO05D008651 4.3e-84 316.6 614 71.5
arahy.Tifrunner.gnm1.ann1.Z0RY6M Arachis hypogaea HOM05D006900 ORTHO05D008651 5.6e-84 316.2 628 72.0
PGR004G2297 Punica granatum HOM05D006900 ORTHO05D008651 9.5e-84 315.5 558 76.5
MSTRG.10150 Avicennia marina HOM05D006900 ORTHO05D008651 1.2e-83 315.1 579 74.8
Manes.03G204600 Manihot esculenta HOM05D006900 ORTHO05D008651 2.8e-83 313.9 563 75.5
HanXRQChr13g0393421 Helianthus annuus HOM05D006900 ORTHO05D008651 1.4e-82 311.6 573 73.6
Thecc.04G300100 Theobroma cacao HOM05D006900 ORTHO05D008651 1.8e-82 311.2 638 69.4
CAN.G274.12 Capsicum annuum HOM05D006900 ORTHO05D008651 2.3e-82 310.8 580 74.7
Lsat_1_v5_gn_6_18120 Lactuca sativa HOM05D006900 ORTHO05D008651 1.5e-81 308.1 604 71.5
Potri.010G145000 Populus trichocarpa HOM05D006900 ORTHO05D008651 1.5e-81 308.1 647 68.6
Sopen04g004200 Solanum pennellii HOM05D006900 ORTHO05D008651 2.0e-81 307.8 583 74.1
ClCG05G006560 Citrullus lanatus HOM05D006900 ORTHO05D008651 2.6e-81 307.4 639 69.2
Migut.G00056 Erythranthe guttata HOM05D006900 ORTHO05D008651 3.4e-81 307.0 554 76.5
Nitab4.5_0004979g0030 Nicotiana tabacum HOM05D006900 ORTHO05D008651 4.4e-81 306.6 592 72.5
Solyc04g009020.4 Solanum lycopersicum HOM05D006900 ORTHO05D008651 4.4e-81 306.6 583 74.1
Haze_01304 Corylus avellana HOM05D006900 ORTHO05D008651 5.8e-81 306.2 644 68.2
TAR362G0296 Trochodendron aralioides HOM05D006900 ORTHO05D008651 5.8e-81 306.2 572 74.0
Dinv15174 Davidia involucrata HOM05D006900 ORTHO05D008651 7.5e-81 305.8 536 78.5
PGSC0003DMG400011531 Solanum tuberosum HOM05D006900 ORTHO05D008651 7.5e-81 305.8 581 74.4
Lj6A690T75 Lonicera japonica HOM05D006900 ORTHO05D008651 1.3e-80 305.1 558 76.0
Cc03_g00870 Coffea canephora HOM05D006900 ORTHO05D008651 2.2e-80 304.3 561 76.1
Eucgr.H04042 Eucalyptus grandis HOM05D006900 ORTHO05D008651 3.7e-80 303.5 579 65.1
Atru.chr4.3007 Acer truncatum HOM05D006900 ORTHO05D008651 4.9e-80 303.1 632 69.3
Lj4g0008712 Lotus japonicus HOM05D006900 ORTHO05D008651 4.9e-80 303.1 631 69.3
Nn3g21725 Nelumbo nucifera HOM05D006900 ORTHO05D008651 1.1e-79 302.0 571 74.4
Sabra10G0112000 Salix brachista HOM05D006900 ORTHO05D008651 1.4e-79 301.6 648 68.8
QL06p012004 Quercus lobata HOM05D006900 ORTHO05D008651 1.9e-79 301.2 570 73.3
MELO3C006715.2 Cucumis melo HOM05D006900 ORTHO05D008651 2.4e-79 300.8 624 70.4
Medtr4g122060 Medicago truncatula HOM05D006900 ORTHO05D008651 2.4e-79 300.8 638 69.4
SGA_v2.0_scaffold104G30080 Striga asiatica HOM05D006900 ORTHO05D008651 3.2e-79 300.4 552 75.5
Ciclev10004521m.g Citrus clementina HOM05D006900 ORTHO05D008651 5.4e-79 299.7 580 73.1
CsaV3_3G015170 Cucumis sativus L. HOM05D006900 ORTHO05D008651 7.0e-79 299.3 625 70.1
Ah.04g156910 Amaranthus hybridus HOM05D006900 ORTHO05D008651 1.2e-78 298.5 629 68.5
Lalb_Chr07g0182071 Lupinus albus HOM05D006900 ORTHO05D008651 1.2e-78 298.5 570 74.4
ECA233G1261 Erigeron canadensis HOM05D006900 ORTHO05D008651 1.6e-78 298.1 530 79.1
CiPaw.02G075100 Carya illinoinensis HOM05D006900 ORTHO05D008651 4.6e-78 296.6 610 70.3
Glyma.07G240000 Glycine max HOM05D006900 ORTHO05D008651 4.6e-78 296.6 574 72.6
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 6.0e-78 296.2 563 73.4
VMungo1215G0487 Vigna mungo HOM05D006900 ORTHO05D008651 2.3e-77 294.3 643 67.3
Nitab4.5_0010299g0060 Nicotiana tabacum HOM05D006900 ORTHO05D008651 3.0e-77 293.9 678 51.6
unitig_748.g8700 Utricularia gibba HOM05D006900 ORTHO05D008651 1.1e-76 292.0 581 71.1
Glyma.17G033400 Glycine max HOM05D006900 ORTHO05D008651 1.9e-76 291.2 640 68.1
MBI18_g32026_MAGBIO Magnolia biondii HOM05D006900 ORTHO05D008651 1.6e-75 288.1 521 77.7
FAN07G1219 Fragaria x ananassa HOM05D006900 ORTHO05D008651 2.1e-75 287.7 609 69.5
CANSAT64G2951 Cannabis sativa HOM05D006900 ORTHO05D008651 3.1e-74 283.9 637 68.1
FvH4_4g19660 Fragaria vesca HOM05D006900 ORTHO05D008651 1.5e-73 281.6 613 69.5
AUR62016204 Chenopodium quinoa HOM05D006900 ORTHO05D008651 2.6e-73 280.8 524 76.9
FAN12G3178 Fragaria x ananassa HOM05D006900 ORTHO05D008651 2.6e-73 280.8 613 68.8
ATR0693G010 Amborella trichopoda HOM05D006900 ORTHO05D008651 3.4e-73 280.4 557 73.8
RcHm_v2.0_Chr4g0425111 Rosa chinensis HOM05D006900 ORTHO05D008651 4.4e-73 280.0 616 70.0
Sc15g0003210 Simmondsia chinensis HOM05D006900 ORTHO05D008651 5.8e-73 279.6 543 76.2
AUR62039284 Chenopodium quinoa HOM05D006900 ORTHO05D008651 7.5e-73 279.3 524 76.7
Phvul.003G114100 Phaseolus vulgaris HOM05D006900 ORTHO05D008651 9.8e-73 278.9 530 75.1
Sed0008833 Sechium edule HOM05D006900 ORTHO05D008651 1.7e-72 278.1 553 75.2
Aqoxy5G02843 Aquilegia oxysepala HOM05D006900 ORTHO05D008651 2.9e-72 277.3 527 75.3
Rhsim02G0004000 Rhododendron simsii HOM05D006900 ORTHO05D008651 3.7e-72 276.9 681 42.0
CDE12G0762 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 1.4e-71 275.0 623 67.6
PSO357G0537 Papaver somniferum HOM05D006900 ORTHO05D008651 2.4e-71 274.2 564 72.9
PSO170G0176 Papaver somniferum HOM05D006900 ORTHO05D008651 1.6e-70 271.6 564 72.9
EL10Ac3g05503 Beta vulgaris HOM05D006900 ORTHO05D008651 2.7e-70 270.8 545 38.3
TPR.G16830 Trifolium pratense HOM05D006900 ORTHO05D008651 2.0e-65 254.6 624 56.7
Zm00001eb014810 Zea mays HOM05D006900 ORTHO05D008651 3.7e-64 250.4 531 74.4
Ca_21442_v3 Cicer arietinum L. HOM05D006900 ORTHO05D008651 2.4e-63 247.7 261 56.3
Hund03124 Selenicereus undatus HOM05D006900 ORTHO05D008651 3.2e-63 247.3 710 56.3
vmacro15184 Vaccinium macrocarpon HOM05D006900 ORTHO05D008651 5.4e-63 246.5 637 65.1
Hma1.2p1_0013F.1_g008580 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 3.5e-62 243.8 195 65.1
DCAR_030472 Daucus carota HOM05D006900 ORTHO05D008651 6.8e-58 229.6 644 58.7
SalBow8G4068 Salvia bowleyana HOM05D006900 ORTHO05D008651 4.4e-57 226.9 182 62.1
CDE01G0483 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 4.9e-56 223.4 259 51.4
Os03g0308800 Oryza sativa ssp. japonica HOM05D006900 ORTHO05D008651 6.4e-48 196.4 160 58.8
SEGI_12330 Sequoiadendron giganteum HOM05D006900 ORTHO05D008651 6.0e-46 189.9 475 76.0
CANSAT78G0722 Cannabis sativa HOM05D006900 ORTHO05D008651 3.5e-38 164.1 242 44.2
Cpa.g.sc9.62 Carica papaya HOM05D006900 ORTHO05D008651 1.3e-37 162.2 187 63.6
Mapoly0078s0010 Marchantia polymorpha HOM05D006900 ORTHO05D008651 1.1e-36 159.1 110 65.5
AagrBONN_evm.TU.Sc2ySwM_368.516 Anthoceros agrestis HOM05D006900 ORTHO05D008651 2.0e-33 148.3 110 64.5
Pp3c1_20310 Physcomitrium patens HOM05D006900 ORTHO05D008651 1.9e-31 141.7 115 58.3
SMO115G0152 Selaginella moellendorffii HOM05D006900 ORTHO05D008651 2.3e-29 134.8 110 61.8
Gohir.A10G171900 Gossypium hirsutum HOM05D006900 ORTHO05D008651 4.3e-28 130.6 174 45.4
CSS0028196 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 1.3e-27 129.0 80 77.5
Gohir.A10G171950 Gossypium hirsutum HOM05D006900 ORTHO05D008651 1.6e-27 128.6 115 61.7
CBR_g12177 Chara braunii HOM05D006900 ORTHO05D008651 2.8e-27 127.9 110 53.6
CSS0035140 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 1.4e-26 125.6 80 75.0
Cpa.g.sc9.61 Carica papaya HOM05D006900 ORTHO05D008651 2.8e-19 101.3 185 42.2
Cre09.g416200 Chlamydomonas reinhardtii HOM05D006900 ORTHO05D008651 6.3e-19 100.1 123 43.9
MCO01G208 Micromonas commoda HOM05D006900 ORTHO05D008651 2.4e-18 98.2 120 44.2
Oeu032012.1 Olea europaea HOM05D006900 ORTHO05D008651 6.1e-14 83.6 97 48.5
PRCOL_00006040 Prasinoderma coloniale HOM05D001216 ORTHO05D005688 6.7e-13 80.1 112 37.5
Oeu032144.1 Olea europaea HOM05D006900 ORTHO05D008651 1.8e-10 72.0 72 84.7
SGA_v2.0_scaffold157G37400 Striga asiatica HOM05D006900 ORTHO05D008651 1.2e-09 69.3 149 34.9


User provided reference genes

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