Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p48890 Brassica napus HOM05D000142 ORTHO05D033390 2.8e-83 312.0 167 100.0
BolC5t33631H Brassica oleracea HOM05D000142 ORTHO05D033390 7.1e-71 270.8 142 100.0
BolC8t49234H Brassica oleracea HOM05D000142 ORTHO05D018564 2.4e-42 176.0 129 82.2
C09p60380 Brassica napus HOM05D000142 ORTHO05D033390 2.4e-26 122.9 67 98.5
C06p06450 Brassica napus HOM05D000142 ORTHO05D001253 9.1e-26 120.9 67 97.0
BcaB08g36818 Brassica carinata HOM05D000142 ORTHO05D018564 1.6e-14 83.6 43 100.0
C08p16130 Brassica napus HOM05D000142 ORTHO05D000124 3.6e-14 82.4 62 71.0
BcaC05g28786 Brassica carinata HOM05D000142 ORTHO05D018564 4.7e-14 82.0 43 97.7
BcaC08g43297 Brassica carinata HOM05D000142 ORTHO05D018564 6.1e-14 81.6 43 97.7
BraA01t03782Z Brassica rapa HOM05D002610 ORTHO05D018564 2.2e-11 73.2 49 81.6
A04p28430 Brassica napus HOM05D000142 ORTHO05D001253 1.8e-10 70.1 37 94.6
C04p65740 Brassica napus HOM05D000142 ORTHO05D001253 1.8e-10 70.1 37 94.6
BolC4t28076H Brassica oleracea HOM05D000142 ORTHO05D001253 1.8e-10 70.1 37 94.6
BraA04t18322Z Brassica rapa HOM05D000142 ORTHO05D001253 1.8e-10 70.1 37 94.6
C03p24140 Brassica napus HOM05D000142 ORTHO05D001253 4.1e-10 68.9 37 91.9
BolC3t14807H Brassica oleracea HOM05D000142 ORTHO05D001253 4.1e-10 68.9 37 91.9
Sp4g19540 Schrenkiella parvula HOM05D000142 ORTHO05D001253 4.1e-10 68.9 37 91.9
A01p37220 Brassica napus HOM05D002610 ORTHO05D018564 9.1e-10 67.8 49 77.6
BcaNung06608 Brassica carinata HOM05D000142 ORTHO05D001253 1.6e-09 67.0 36 91.7
Aa31LG5G22550 Aethionema arabicum HOM05D000142 ORTHO05D001253 1.3e-08 63.9 36 88.9
Sp5g08880 Schrenkiella parvula HOM05D000142 ORTHO05D001253 1.3e-08 63.9 36 88.9
Carub.0004s1912 Capsella rubella HOM05D000142 ORTHO05D001253 1.7e-08 63.5 92 50.0
Glyma.10G058500 Glycine max HOM05D000142 ORTHO05D001253 1.7e-08 63.5 36 86.1
AL5G34380 Arabidopsis lyrata HOM05D000142 ORTHO05D001253 2.2e-08 63.2 36 88.9
AT3G53460 Arabidopsis thaliana HOM05D000142 ORTHO05D001253 2.2e-08 63.2 36 88.9
Carub.0005s2003 Capsella rubella HOM05D000142 ORTHO05D001253 2.2e-08 63.2 36 88.9
Potri.016G090700 Populus trichocarpa HOM05D000142 ORTHO05D001253 2.2e-08 63.2 37 83.8
Aa31LG10G8640 Aethionema arabicum HOM05D000142 ORTHO05D001253 2.9e-08 62.8 38 81.6
Migut.J00538 Erythranthe guttata HOM05D000142 ORTHO05D001253 6.5e-08 61.6 37 83.8
Thhalv10017023m.g Eutrema salsugineum HOM05D000142 ORTHO05D001253 6.5e-08 61.6 37 81.1
Manes.08G008000 Manihot esculenta HOM05D000142 ORTHO05D001253 6.5e-08 61.6 36 86.1
Thecc.05G061700 Theobroma cacao HOM05D000142 ORTHO05D001253 6.5e-08 61.6 36 86.1
Glyma.13G145200 Glycine max HOM05D000142 ORTHO05D001253 8.5e-08 61.2 113 43.4
Sabra16G0096200 Salix brachista HOM05D000142 ORTHO05D001253 8.5e-08 61.2 37 81.1
AT2G37220 Arabidopsis thaliana HOM05D000142 ORTHO05D001253 1.1e-07 60.8 94 51.1
CARHR163360 Cardamine hirsuta HOM05D000142 ORTHO05D001253 1.1e-07 60.8 36 86.1
BcaB07g32161 Brassica carinata HOM05D000142 ORTHO05D018740 1.5e-07 60.5 109 46.8
A03p20540 Brassica napus HOM05D000142 ORTHO05D001253 1.5e-07 60.5 109 42.2
BraA03t11297Z Brassica rapa HOM05D000142 ORTHO05D001253 1.5e-07 60.5 109 42.2
CiPaw.09G175100 Carya illinoinensis HOM05D000142 ORTHO05D001253 1.5e-07 60.5 37 81.1
Thhalv10010545m.g Eutrema salsugineum HOM05D000142 ORTHO05D001253 1.5e-07 60.5 36 83.3
AL4G33590 Arabidopsis lyrata HOM05D000142 ORTHO05D001253 1.9e-07 60.1 93 49.5
CARHR132370 Cardamine hirsuta HOM05D000142 ORTHO05D001253 1.9e-07 60.1 89 50.6
BcaB01g00270 Brassica carinata HOM05D000142 ORTHO05D001253 2.5e-07 59.7 36 83.3
BcaC07g39708 Brassica carinata HOM05D000142 ORTHO05D001253 2.5e-07 59.7 36 83.3
A07p21650 Brassica napus HOM05D000142 ORTHO05D001253 2.5e-07 59.7 36 83.3
A09p46470 Brassica napus HOM05D000142 ORTHO05D001253 2.5e-07 59.7 36 83.3
C06p21280 Brassica napus HOM05D000142 ORTHO05D001253 2.5e-07 59.7 36 83.3
C08p28820 Brassica napus HOM05D000142 ORTHO05D001253 2.5e-07 59.7 36 83.3
BolC8t50483H Brassica oleracea HOM05D000142 ORTHO05D001253 2.5e-07 59.7 36 83.3
BraA09t40111Z Brassica rapa HOM05D000142 ORTHO05D001253 2.5e-07 59.7 36 83.3
CSS0012049 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D001253 2.5e-07 59.7 36 80.6
Duzib093G1647 Durio zibethinus HOM05D000142 ORTHO05D001253 2.5e-07 59.7 36 83.3
Eucgr.K01243 Eucalyptus grandis HOM05D000142 ORTHO05D001253 4.2e-07 58.9 37 78.4
BcaB02g09298 Brassica carinata HOM05D000142 ORTHO05D001253 7.2e-07 58.2 112 43.8
BraA05t19835Z Brassica rapa HOM05D000142 ORTHO05D001253 7.2e-07 58.2 115 44.3
SGA_v2.0_scaffold323G48654 Striga asiatica HOM05D000037 ORTHO05D051382 7.2e-07 58.2 35 80.0
A05p08670 Brassica napus HOM05D000142 ORTHO05D001253 9.4e-07 57.8 115 44.3
CANSAT80G2374 Cannabis sativa HOM05D000142 ORTHO05D001253 9.4e-07 57.8 37 75.7
Gohir.D04G112600 Gossypium hirsutum HOM05D000142 ORTHO05D001253 9.4e-07 57.8 36 80.6
Gorai.009G416900 Gossypium raimondii HOM05D000142 ORTHO05D001253 9.4e-07 57.8 36 80.6
Nn2g13128 Nelumbo nucifera HOM05D000142 ORTHO05D001253 9.4e-07 57.8 36 77.8
Oeu045207.1 Olea europaea HOM05D000142 ORTHO05D001253 9.4e-07 57.8 36 75.0
PGR142G4243 Punica granatum HOM05D000142 ORTHO05D001253 9.4e-07 57.8 56 55.4
Cc06_g03970 Coffea canephora HOM05D000524 ORTHO05D000381 1.2e-06 57.4 36 80.6
unitig_8.g4955 Utricularia gibba HOM05D000142 ORTHO05D001253 1.2e-06 57.4 36 80.6
Peaxi162Scf00123g00068 Petunia axillaris HOM05D000142 ORTHO05D001253 1.6e-06 57.0 37 75.7
unitig_578.g15799 Utricularia gibba HOM05D000142 ORTHO05D001253 1.6e-06 57.0 35 77.1
Ah.08g211720 Amaranthus hybridus HOM05D000142 ORTHO05D001253 2.1e-06 56.6 35 80.0
BcaC02g11843 Brassica carinata HOM05D000142 ORTHO05D001253 2.1e-06 56.6 117 43.6
HanXRQChr07g0195311 Helianthus annuus HOM05D000142 ORTHO05D001253 2.1e-06 56.6 36 75.0
arahy.Tifrunner.gnm1.ann1.145GHR Arachis hypogaea HOM05D000142 ORTHO05D001253 2.7e-06 56.2 107 40.2
arahy.Tifrunner.gnm1.ann1.J4YCND Arachis hypogaea HOM05D000142 ORTHO05D001253 2.7e-06 56.2 107 40.2
BolC3t20149H Brassica oleracea HOM05D000278 ORTHO05D018740 2.7e-06 56.2 81 54.3
PSO339G1818 Papaver somniferum HOM05D000142 ORTHO05D001253 2.7e-06 56.2 90 46.7
PSO801G0024 Papaver somniferum HOM05D000142 ORTHO05D001253 2.7e-06 56.2 90 46.7
CiPaw.10G133300 Carya illinoinensis HOM05D000142 ORTHO05D001253 3.6e-06 55.8 35 80.0
Migut.L01683 Erythranthe guttata HOM05D000142 ORTHO05D001253 3.6e-06 55.8 59 57.6
Nitab4.5_0000101g0220 Nicotiana tabacum HOM05D000142 ORTHO05D001253 3.6e-06 55.8 37 70.3
Nitab4.5_0016936g0020 Nicotiana tabacum HOM05D000142 ORTHO05D001253 3.6e-06 55.8 37 70.3
Os03g0376600 Oryza sativa ssp. japonica HOM05D000142 ORTHO05D001253 4.7e-06 55.5 37 70.3
PGSC0003DMG400017584 Solanum tuberosum HOM05D000142 ORTHO05D001253 4.7e-06 55.5 102 44.1
THA.LOC104805315 Tarenaya hassleriana HOM05D000142 ORTHO05D001253 4.7e-06 55.5 35 74.3
THA.LOC104823445 Tarenaya hassleriana HOM05D000142 ORTHO05D001253 4.7e-06 55.5 35 77.1
Atru.chr8.1858 Acer truncatum HOM05D000142 ORTHO05D001253 6.1e-06 55.1 102 43.1
C04p10770 Brassica napus HOM05D000142 ORTHO05D001253 6.1e-06 55.1 100 47.0
BolC4t22671H Brassica oleracea HOM05D000142 ORTHO05D001253 6.1e-06 55.1 100 47.0
CSS0024338 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D001253 6.1e-06 55.1 85 51.8
AUR62040470 Chenopodium quinoa HOM05D000142 ORTHO05D001253 6.1e-06 55.1 36 75.0
Ciclev10012331m.g Citrus clementina HOM05D000142 ORTHO05D001253 6.1e-06 55.1 85 48.2
Phvul.007G150700 Phaseolus vulgaris HOM05D000142 ORTHO05D001253 6.1e-06 55.1 113 40.7
unitig_578.g16042 Utricularia gibba HOM05D000142 ORTHO05D001253 6.1e-06 55.1 36 77.8
Gohir.A09G149100 Gossypium hirsutum HOM05D000142 ORTHO05D001253 8.0e-06 54.7 115 40.0
Zm00001eb018320 Zea mays HOM05D000142 ORTHO05D001253 8.0e-06 54.7 35 74.3


User provided reference genes

Program Settings