Gene: Carub.0005s2003

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0005s2003
  • Transcript Identifier Carub.0005s2003.1
  • Gene Type Coding gene
  • Location scaffold_5 : 9968077-9969651 : negative

Gene Family Information

  • ID HOM05D000142
  • #Genes/#Species 2580/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0005s2003.v1.1
  • pacid 39226417
  • synonym Carubv10017634m.g

Descriptions

  • Description KOG0131//KOG0144 - Splicing factor 3b, subunit 4 // RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT3G53460
GO:0008380
ISO
PLAZA Integrative OrthologyRNA splicing AT3G53460
GO:0006396
ISO
PLAZA Integrative OrthologyRNA processing AT3G53460
GO:0009631
ISO
PLAZA Integrative Orthologycold acclimation AT3G53460
GO:0043489
ISO
PLAZA Integrative OrthologyRNA stabilization AT3G53460

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT3G53460
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G53460
GO:0008266
ISO
PLAZA Integrative Orthologypoly(U) RNA binding AT3G53460

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT3G53460
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT3G53460
GO:0009579
ISO
PLAZA Integrative Orthologythylakoid AT3G53460

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.11.2.1 RNA processing.organelle machinery.plastidial mRNA stabilisation.ribonucleoprotein (CP29)