Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1623.2 798 100.0
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1600.5 798 98.2
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1596.6 799 98.2
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1590.5 799 97.6
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1576.6 800 97.6
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1571.6 798 96.5
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1546.6 798 95.1
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1532.3 798 93.9
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1532.3 798 93.9
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1531.5 798 94.0
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1528.8 798 93.5
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1526.1 799 93.6
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1526.1 799 93.7
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1522.7 799 93.2
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1498.4 797 90.8
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1497.6 797 90.7
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1471.8 798 89.1
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1407.1 854 81.6
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1391.3 757 89.6
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1365.1 812 80.9
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1305.8 806 77.9
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1303.9 808 78.1
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1303.5 806 77.4
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1302.3 808 78.2
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1301.6 806 77.9
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1300.0 808 77.7
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1299.6 808 78.1
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1298.5 808 78.0
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1296.6 806 78.0
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1296.2 807 77.1
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1295.8 808 77.8
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1295.8 809 76.4
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1293.1 811 76.7
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1291.9 808 76.2
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1291.9 806 77.3
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1288.1 817 76.6
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1286.2 807 75.7
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1284.6 806 76.6
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1283.9 808 77.0
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1282.3 807 76.0
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1281.9 806 76.9
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1281.5 806 77.3
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1280.8 811 76.9
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1279.2 806 77.2
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1277.3 806 76.6
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1276.9 805 75.9
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1275.4 811 75.7
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1274.6 810 75.7
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1273.5 807 75.3
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1273.5 807 76.5
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1271.5 811 75.3
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1269.2 806 75.9
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1268.1 803 76.3
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1267.3 804 75.9
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1267.3 808 75.5
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1266.9 800 76.4
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1265.8 805 75.7
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1265.4 811 75.1
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1265.0 803 75.5
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1263.1 805 75.8
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1260.0 805 75.8
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1258.8 805 75.2
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1254.6 806 75.4
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1251.1 809 75.6
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1248.4 806 75.3
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1246.1 804 74.8
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1243.4 811 73.7
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1234.2 805 74.9
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1232.6 798 73.8
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1230.3 807 73.6
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1228.0 804 73.5
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1225.3 801 73.8
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1224.5 882 68.6
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1220.3 796 73.5
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1218.0 807 73.0
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1215.3 812 73.5
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1211.4 828 72.1
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1210.7 811 73.0
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1206.0 804 72.3
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1202.6 804 72.0
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1200.7 801 72.4
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1199.9 805 72.3
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1198.3 804 71.9
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1195.6 808 71.9
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1194.1 799 72.2
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1186.8 807 71.9
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1183.3 805 71.9
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1183.3 800 71.6
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1174.8 804 70.4
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1174.1 804 69.8
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1169.1 803 70.6
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1168.7 868 67.5
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1165.6 858 66.4
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1162.5 786 72.9
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1162.1 805 70.2
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1160.2 806 72.3
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1159.4 804 69.2
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1156.7 803 69.4
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1154.4 800 70.1
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1147.9 801 69.8
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1135.9 809 69.0
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1128.2 818 67.6
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1124.0 911 63.2
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1115.5 811 68.2
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1109.7 962 60.3
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1103.2 812 67.2
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1097.8 775 68.8
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1094.0 962 59.8
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1086.2 802 66.5
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 0.0e+00 1084.3 823 64.8
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 1.0e-300 1036.6 805 64.5
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 2.9e-295 1018.5 794 63.1
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 5.6e-291 1004.2 812 63.9
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 3.2e-270 935.3 605 74.5
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 4.3e-267 924.9 802 59.0
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 3.7e-234 815.5 780 56.8
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 2.9e-194 682.9 854 45.3
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 4.4e-179 632.5 381 78.7
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 1.7e-167 594.0 829 41.1
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 1.8e-151 540.8 802 41.6
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 8.7e-151 538.5 941 35.1
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 5.8e-147 525.8 843 38.9
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 4.5e-123 446.4 418 56.7
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 8.0e-112 409.1 316 63.0
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 3.4e-102 377.1 244 71.3
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 9.1e-100 369.0 349 57.9
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 5.6e-89 333.2 236 71.2
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 3.1e-71 274.2 198 67.2
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 1.3e-66 258.8 172 73.8
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 1.9e-49 201.8 303 41.3
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 5.3e-47 193.7 141 71.6
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 4.5e-46 190.7 190 56.8
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 1.0e-37 162.9 90 81.1
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 2.2e-37 161.8 263 39.9
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 1.3e-32 146.0 103 67.0
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 1.6e-32 145.6 133 51.9
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 3.1e-31 141.4 104 61.5
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 2.2e-29 135.2 100 70.0
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 1.4e-28 132.5 190 43.7
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 1.9e-28 132.1 176 44.9
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 3.2e-28 131.3 79 81.0
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 3.5e-27 127.9 120 59.2
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 4.6e-27 127.5 113 49.6
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 3.9e-26 124.4 118 55.1
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 1.4e-23 115.9 175 41.1
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 5.3e-23 114.0 259 31.3
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 3.4e-22 111.3 115 52.2
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 2.1e-19 102.1 69 69.6
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 1.1e-17 96.3 58 75.9
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 1.5e-17 95.9 50 84.0
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 4.8e-16 90.9 73 65.8
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 1.1e-15 89.7 43 88.4
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 1.7e-13 82.4 68 58.8
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 5.5e-12 77.4 143 42.0
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 1.6e-11 75.9 129 38.0
Sed0011564 Sechium edule HOM05D000344 ORTHO05D003478 2.1e-11 75.5 432 21.3
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 3.6e-11 74.7 60 51.7
Manes.16G131400 Manihot esculenta HOM05D000344 ORTHO05D003478 3.9e-10 71.2 404 21.5
Medtr4g115880 Medicago truncatula HOM05D000344 ORTHO05D003478 7.4e-09 67.0 319 23.2
GSVIVG01035988001 Vitis vinifera HOM05D000344 ORTHO05D003478 9.7e-09 66.6 384 21.4
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 1.3e-08 66.2 57 57.9
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 2.2e-08 65.5 69 59.4
PGR044G0522 Punica granatum HOM05D000344 ORTHO05D003478 1.4e-07 62.8 440 21.1
Nn8g40092 Nelumbo nucifera HOM05D000344 ORTHO05D003478 9.1e-07 60.1 406 20.7
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 3.5e-06 58.2 57 54.4
SHI03219 Sapria himalayana HOM05D000344 ORTHO05D003478 4.5e-06 57.8 386 20.7
Gohir.D10G199250 Gossypium hirsutum HOM05D004364 ORTHO05D017991 5.9e-06 57.4 57 54.4
Gohir.D11G177550 Gossypium hirsutum HOM05D004364 ORTHO05D017991 5.9e-06 57.4 57 54.4


User provided reference genes

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