Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 1.6e-294 1015.4 525 100.0
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 3.9e-293 1010.7 525 99.6
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 5.1e-293 1010.4 525 99.4
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 3.2e-287 991.1 525 97.5
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 5.2e-285 983.8 528 96.6
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 1.1e-279 966.1 527 94.9
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 7.7e-265 916.8 528 89.4
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 3.8e-264 914.4 526 89.5
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 4.2e-263 911.0 523 90.1
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 1.8e-261 905.6 524 89.3
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 1.1e-255 886.3 526 88.0
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 2.5e-247 858.6 499 89.4
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 1.4e-245 852.8 524 83.4
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 1.1e-221 773.5 501 79.6
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 7.1e-210 734.2 491 77.0
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 2.7e-209 732.3 505 74.9
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 7.9e-209 730.7 517 73.5
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 1.3e-208 729.9 493 75.9
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 5.1e-208 728.0 491 73.7
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 1.6e-206 723.0 494 75.1
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 2.8e-206 722.2 503 71.8
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 4.8e-206 721.5 490 75.5
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 4.8e-206 721.5 493 73.2
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 6.2e-206 721.1 492 74.2
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 1.8e-205 719.5 493 71.8
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 2.4e-205 719.2 491 75.4
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 3.1e-205 718.8 491 71.9
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 9.0e-205 717.2 491 73.7
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 1.2e-204 716.8 504 72.2
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 1.5e-204 716.5 506 71.1
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 1.3e-203 713.4 507 72.6
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 1.7e-203 713.0 500 73.2
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 3.8e-203 711.8 491 74.7
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 3.8e-203 711.8 492 73.6
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 6.5e-203 711.1 500 72.8
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 6.5e-203 711.1 505 71.9
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 1.1e-202 710.3 494 73.1
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 1.1e-202 710.3 500 73.0
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 1.9e-202 709.5 514 72.2
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 7.1e-202 707.6 492 73.8
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 9.3e-202 707.2 499 72.7
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 1.2e-201 706.8 499 72.3
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 1.6e-201 706.4 500 72.4
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 2.7e-201 705.7 479 74.7
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 3.5e-201 705.3 490 72.0
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 4.6e-201 704.9 499 72.3
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 6.0e-201 704.5 494 74.1
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 1.0e-200 703.7 499 71.9
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 1.8e-200 703.0 490 73.1
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 3.0e-200 702.2 493 74.0
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 3.9e-200 701.8 502 71.7
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 3.9e-200 701.8 492 73.4
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 3.9e-200 701.8 487 72.7
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 3.9e-200 701.8 502 72.1
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 5.1e-200 701.4 501 72.1
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 8.7e-200 700.7 492 73.0
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 8.7e-200 700.7 499 72.1
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 8.7e-200 700.7 500 72.0
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 1.1e-199 700.3 491 71.7
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 1.1e-199 700.3 492 74.0
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 1.5e-199 699.9 488 70.9
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 1.5e-199 699.9 500 71.6
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 1.9e-199 699.5 522 69.7
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 1.9e-199 699.5 493 73.2
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 2.5e-199 699.1 499 71.9
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.3e-198 696.8 514 71.0
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 1.6e-198 696.4 500 71.8
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 2.1e-198 696.0 503 71.6
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 2.1e-198 696.0 500 71.4
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 2.1e-198 696.0 492 72.4
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 2.8e-198 695.7 500 69.4
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 1.8e-197 693.0 486 72.6
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 2.4e-197 692.6 513 70.2
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 5.3e-197 691.4 494 72.3
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 6.9e-197 691.0 491 71.5
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 1.5e-196 689.9 491 70.5
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 3.4e-196 688.7 522 69.3
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 4.5e-196 688.3 492 72.2
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 4.5e-196 688.3 491 72.1
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 1.0e-195 687.2 502 69.3
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 2.9e-195 685.6 523 69.8
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 1.1e-194 683.7 471 73.5
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 1.9e-194 682.9 492 71.5
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 7.2e-194 681.0 489 70.3
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 2.1e-193 679.5 463 74.9
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.5e-193 678.7 488 72.1
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 6.1e-193 677.9 491 70.3
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 5.7e-191 671.4 493 69.2
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 1.3e-190 670.2 488 70.3
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 4.1e-189 665.2 482 70.5
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 1.6e-185 653.3 483 68.9
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 1.5e-183 646.7 555 64.3
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 3.3e-183 645.6 437 73.9
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 1.1e-178 630.6 489 65.0
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 1.8e-173 613.2 510 64.1
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 4.0e-168 595.5 518 61.0
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 1.7e-166 590.1 495 61.8
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 1.3e-163 580.5 638 52.7
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 9.4e-162 574.3 473 63.2
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 2.7e-161 572.8 463 65.0
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 4.4e-159 565.5 513 59.1
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 1.3e-158 563.9 511 57.5
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 4.1e-157 558.9 385 73.2
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 2.7e-140 503.1 488 55.9
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 6.0e-132 475.3 409 59.9
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 9.8e-127 458.0 324 73.8
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 2.4e-117 426.8 359 66.3
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 2.3e-107 393.7 555 43.6
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 1.7e-102 377.5 267 71.5
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 2.1e-97 360.5 256 71.1
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 8.2e-73 278.9 368 44.8
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 1.0e-70 271.9 189 69.3
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 1.9e-69 267.7 280 56.1
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 7.9e-68 262.3 458 39.3
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 1.5e-66 258.1 171 73.7
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 6.1e-60 236.1 157 73.9
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 5.7e-58 229.6 147 76.9
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 5.3e-56 223.0 229 50.7
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.2e-53 213.8 134 73.1
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 4.2e-45 186.8 121 75.2
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 3.4e-42 177.2 128 74.2
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 5.7e-42 176.4 153 60.8
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 2.8e-41 174.1 148 67.6
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 9.8e-34 149.1 172 52.3
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.3e-33 148.7 156 53.2
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 8.3e-33 146.0 295 36.9
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 1.1e-32 145.6 217 41.0
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 4.3e-29 133.7 99 71.7
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 4.3e-29 133.7 99 71.7
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 3.6e-28 130.6 95 68.4
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 1.3e-25 122.1 128 57.8
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 2.0e-23 114.8 84 66.7
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 1.8e-19 101.7 146 42.5
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 5.8e-18 96.7 62 75.8
CARHR153920 Cardamine hirsuta HOM05D005536 ORTHO05D116486 1.7e-14 85.1 75 65.3
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 3.0e-14 84.3 201 31.3
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 8.6e-14 82.8 82 58.5
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 4.0e-11 73.9 50 78.0
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 5.2e-11 73.6 78 53.8
Medtr2g006225 Medicago truncatula HOM05D005536 ORTHO05D266164 4.6e-07 60.5 72 47.2
arahy.Tifrunner.gnm1.ann1.A8AWVV Arachis hypogaea HOM05D005540 ORTHO05D006932 1.7e-06 58.5 102 36.3
arahy.Tifrunner.gnm1.ann1.IJ36EI Arachis hypogaea HOM05D005540 ORTHO05D006932 1.7e-06 58.5 102 36.3
Sed0017329 Sechium edule HOM05D005540 ORTHO05D006932 1.7e-06 58.5 109 34.9
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 2.3e-06 58.2 110 33.6
Glyma.18G038600 Glycine max HOM05D005540 ORTHO05D006932 2.3e-06 58.2 102 36.3
Rhsim08G0085100 Rhododendron simsii HOM05D005540 ORTHO05D006932 2.3e-06 58.2 116 35.3
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 3.9e-06 57.4 110 33.6
Glyma.11G218700 Glycine max HOM05D005540 ORTHO05D006932 3.9e-06 57.4 102 36.3
LjContig00141g0003223 Lotus japonicus HOM05D005540 ORTHO05D006932 3.9e-06 57.4 90 37.8
Sed0021451 Sechium edule HOM05D005540 ORTHO05D006932 3.9e-06 57.4 102 36.3
VMungo1383G3344 Vigna mungo HOM05D005540 ORTHO05D006932 3.9e-06 57.4 102 35.3
Phvul.001G232200 Phaseolus vulgaris HOM05D005540 ORTHO05D006932 5.1e-06 57.0 102 35.3
ClCG05G010900 Citrullus lanatus HOM05D005540 ORTHO05D006932 8.6e-06 56.2 102 34.3


User provided reference genes

Program Settings