Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2841.2 1463 100.0
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2826.2 1463 99.3
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2801.2 1463 98.6
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2791.9 1463 98.2
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2759.9 1463 96.9
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2661.7 1465 93.2
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 2657.9 1467 93.4
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 2657.5 1467 92.6
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2656.7 1466 93.2
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2655.2 1465 93.1
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2652.1 1468 92.8
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2642.1 1465 92.7
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2625.1 1469 92.0
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 2615.1 1471 91.4
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 2606.6 1472 91.5
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 2574.3 1475 90.3
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 2569.3 1469 90.0
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2521.5 1333 98.0
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 2368.2 1439 85.3
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 2345.1 1480 82.5
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2194.9 1503 76.0
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2181.4 1499 75.3
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2176.0 1503 75.2
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2174.1 1503 75.1
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2167.9 1502 75.4
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2164.4 1505 75.5
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2164.4 1505 75.0
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2152.1 1503 74.9
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2134.0 1507 74.0
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2132.8 1501 73.4
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2131.7 1503 73.5
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2127.1 1503 73.9
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2115.5 1506 73.2
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2112.8 1495 72.8
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2111.6 1501 73.3
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2110.9 1505 73.3
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2108.6 1504 72.9
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2105.9 1496 72.9
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2103.6 1488 72.8
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2102.8 1496 73.1
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2098.6 1496 72.9
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2095.1 1496 72.8
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2090.5 1488 73.3
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2089.3 1496 72.1
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2087.4 1496 72.4
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2085.8 1496 72.7
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2078.9 1491 72.3
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2078.5 1495 72.6
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2077.0 1502 72.0
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2075.1 1501 71.8
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2074.7 1495 71.7
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2074.7 1495 72.0
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2070.0 1526 71.0
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2063.1 1484 71.5
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2053.9 1496 71.3
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2051.6 1496 70.9
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2049.2 1496 70.8
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2044.6 1496 70.5
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2043.1 1493 71.1
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2042.7 1496 70.7
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2033.8 1447 73.0
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2030.8 1491 70.5
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2030.4 1491 70.8
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2028.4 1499 70.2
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2028.1 1497 70.2
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 2023.8 1494 70.5
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2023.1 1504 70.3
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2020.4 1499 70.4
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2018.0 1558 68.7
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2016.1 1498 70.2
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2011.1 1537 68.4
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 2010.0 1493 69.8
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2007.6 1488 70.2
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 2006.9 1490 69.7
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2003.0 1498 69.3
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 1999.6 1495 69.5
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 1998.4 1497 69.3
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 1997.6 1501 70.0
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 1980.7 1573 66.9
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 1974.1 1549 67.1
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 1970.3 1502 68.6
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 1963.7 1495 69.0
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 1963.7 1498 68.4
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 1955.3 1482 68.3
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1949.1 1490 67.4
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1931.0 1492 68.0
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1926.0 1492 67.8
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1924.1 1476 68.1
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 1923.7 1500 66.9
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1912.5 1501 67.5
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1882.1 1570 64.4
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 1877.4 1475 66.9
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1863.6 1509 65.5
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1842.8 1314 74.1
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1821.6 1314 73.1
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 1813.9 1310 72.8
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1798.1 1279 73.2
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 1796.9 1582 62.7
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1789.2 1479 63.8
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1724.1 1209 73.9
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1718.7 1487 60.9
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1718.0 1308 69.3
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1693.7 1388 67.1
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1659.8 1429 61.8
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1631.3 1440 59.4
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1630.5 1446 61.7
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1509.2 988 77.9
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1505.3 1534 54.2
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1503.4 1522 54.3
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1382.9 1395 56.2
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1309.7 1207 57.5
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1307.4 1093 65.4
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1258.0 1293 53.7
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1236.9 1382 52.0
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1187.2 1366 51.5
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 8.7e-306 1054.3 1256 51.0
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 7.9e-291 1004.6 747 73.1
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 1.5e-286 990.3 746 68.8
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 4.6e-283 978.8 849 60.7
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 2.3e-250 870.2 771 61.5
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 2.7e-243 846.7 882 56.0
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 7.7e-230 802.0 715 61.0
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 4.7e-227 792.7 903 52.6
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 6.1e-227 792.3 578 68.3
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 1.9e-199 701.0 608 60.0
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 7.1e-199 699.1 470 78.9
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 3.2e-191 673.7 597 61.5
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.6e-166 591.7 362 78.7
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 1.8e-162 578.2 736 46.1
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 1.2e-153 548.9 445 68.3
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 1.2e-150 538.9 474 65.0
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 1.6e-134 485.3 543 52.7
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 3.7e-115 421.0 748 40.0
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 8.3e-99 366.7 1828 24.6
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 2.8e-94 351.7 230 79.6
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 1.3e-91 342.8 1339 28.3
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 4.3e-87 327.8 444 44.8
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 6.2e-86 323.9 1610 25.2
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 3.3e-79 301.6 224 70.1
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.3e-75 289.7 396 46.2
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.5e-71 276.2 235 61.3
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 1.4e-69 269.6 238 63.0
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 2.2e-67 262.3 155 76.1
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 2.9e-67 261.9 152 78.9
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 9.6e-63 246.9 267 53.2
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 4.5e-60 238.0 205 59.5
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 4.8e-46 191.4 1352 23.8
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 3.1e-45 188.7 102 86.3
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 9.3e-42 177.2 155 60.6
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.4e-40 173.3 336 39.0
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 2.5e-39 169.1 186 51.6
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 5.9e-36 157.9 189 50.8
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 5.5e-34 151.4 130 60.0
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 4.7e-33 148.3 119 66.4
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 1.1e-31 143.7 225 45.8
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 3.3e-31 142.1 102 70.6
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 1.1e-26 127.1 131 52.7
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 2.7e-25 122.5 101 65.3
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 1.3e-22 113.6 55 89.1
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 5.3e-21 108.2 64 78.1
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 2.6e-20 105.9 131 49.6
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 5.9e-20 104.8 67 70.1
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.2e-15 90.5 110 52.7
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 1.7e-14 86.7 53 77.4
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 1.7e-14 86.7 53 77.4
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 5.3e-13 81.6 69 59.4
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 1.0e-08 67.4 50 64.0
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 6.8e-08 64.7 35 80.0
CSS0014875 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D004921 4.8e-06 58.5 65 46.2
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 8.3e-06 57.8 135 29.6


User provided reference genes

Program Settings