Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 1.7e-252 875.5 448 100.0
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 7.1e-251 870.2 448 99.1
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 1.8e-241 839.0 448 96.2
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 5.8e-237 823.9 448 95.5
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 1.1e-232 809.7 474 90.3
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 7.9e-226 786.9 448 91.7
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 1.8e-225 785.8 448 91.5
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 6.7e-225 783.9 448 91.5
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 2.2e-223 778.9 475 86.3
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 2.8e-223 778.5 449 91.3
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 3.1e-222 775.0 448 90.4
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 4.1e-222 774.6 449 89.5
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 1.9e-219 765.8 449 89.8
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 1.9e-219 765.8 449 89.5
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 2.3e-217 758.8 449 89.3
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 1.4e-211 739.6 449 86.9
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 2.1e-210 735.7 449 85.7
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 1.8e-206 722.6 449 85.1
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 5.5e-195 684.5 464 78.4
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 4.0e-185 651.7 400 86.5
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 2.9e-180 635.6 446 74.4
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 1.0e-177 627.1 457 72.4
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 1.8e-177 626.3 457 72.6
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 3.0e-177 625.5 457 72.2
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 1.6e-173 613.2 455 72.5
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 4.7e-170 601.7 455 70.5
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 4.0e-169 598.6 458 69.7
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 6.8e-169 597.8 455 69.9
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 4.4e-168 595.1 449 71.3
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 9.8e-168 594.0 453 69.8
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 1.4e-166 590.1 453 70.0
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 5.6e-163 578.2 454 67.8
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 8.0e-162 574.3 452 69.0
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.8e-161 573.2 448 68.5
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 6.8e-161 571.2 451 67.4
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 9.8e-160 567.4 456 67.5
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 1.3e-159 567.0 455 68.6
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 4.9e-159 565.1 454 67.6
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 4.9e-159 565.1 453 68.2
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 6.4e-159 564.7 455 67.9
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 8.3e-159 564.3 448 67.4
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 1.1e-158 563.9 449 67.7
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 2.4e-158 562.8 446 67.9
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 3.2e-158 562.4 422 71.1
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 4.1e-158 562.0 456 68.0
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 9.2e-158 560.8 455 67.3
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 1.2e-157 560.5 446 67.5
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 2.1e-157 559.7 456 66.4
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 6.0e-157 558.1 462 66.7
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 1.7e-156 556.6 455 67.5
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 3.0e-156 555.8 448 66.7
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 3.9e-156 555.4 454 67.0
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 2.5e-155 552.7 452 66.6
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 5.6e-155 551.6 467 66.6
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 5.6e-155 551.6 445 67.2
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 7.3e-155 551.2 453 66.2
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 2.8e-154 549.3 394 71.8
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 6.2e-154 548.1 452 67.9
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.1e-153 547.4 452 65.7
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 1.1e-153 547.4 456 67.3
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 5.2e-153 545.0 448 68.1
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 5.2e-153 545.0 454 66.7
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 5.2e-153 545.0 445 65.4
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 5.2e-153 545.0 445 67.4
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 2.6e-152 542.7 446 66.1
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 4.4e-152 542.0 448 67.6
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 5.8e-152 541.6 453 66.4
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 2.2e-151 539.7 462 64.7
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 2.2e-151 539.7 446 66.8
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 3.7e-151 538.9 445 66.5
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 6.4e-151 538.1 445 65.4
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 1.1e-150 537.3 445 65.4
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 1.1e-150 537.3 451 66.1
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 1.1e-150 537.3 453 66.4
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 1.4e-150 537.0 471 67.1
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 4.1e-150 535.4 465 64.3
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 5.4e-150 535.0 457 65.4
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 1.2e-149 533.9 449 65.9
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 1.2e-149 533.9 462 64.9
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 2.1e-149 533.1 491 62.5
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 6.0e-149 531.6 457 64.6
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 5.1e-148 528.5 457 64.3
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 1.1e-147 527.3 471 63.3
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 1.1e-147 527.3 428 67.1
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 1.9e-147 526.6 448 64.7
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 4.3e-147 525.4 448 65.2
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 7.3e-147 524.6 414 68.4
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.2e-146 523.9 455 63.5
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 1.8e-145 520.0 448 64.7
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 1.8e-145 520.0 463 63.5
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 4.0e-145 518.8 454 63.7
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 8.9e-145 517.7 443 63.7
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 1.5e-144 516.9 460 64.6
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 2.6e-144 516.2 453 62.7
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 2.9e-143 512.7 451 61.4
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 4.9e-143 511.9 457 63.0
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 1.9e-142 510.0 453 63.6
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 7.1e-142 508.1 452 61.3
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 1.2e-141 507.3 429 64.3
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 1.3e-140 503.8 455 62.9
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 2.4e-137 493.0 452 60.2
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 2.4e-137 493.0 497 58.4
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 6.9e-137 491.5 415 65.5
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 3.8e-135 485.7 455 62.2
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 6.4e-135 485.0 457 60.2
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 1.1e-134 484.2 452 61.1
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 9.3e-134 481.1 457 60.6
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.2e-133 480.7 453 60.0
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 3.0e-132 476.1 454 59.5
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 2.5e-131 473.0 457 60.4
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 2.4e-126 456.4 461 58.1
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 3.2e-126 456.1 371 66.8
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 6.7e-124 448.4 429 59.9
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 8.7e-124 448.0 347 72.6
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 1.5e-123 447.2 456 58.1
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 3.1e-121 439.5 395 61.3
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 4.0e-121 439.1 414 59.4
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 7.1e-118 428.3 459 56.2
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 1.2e-117 427.6 417 58.8
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 4.6e-117 425.6 247 94.7
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 1.4e-113 414.1 455 55.8
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 3.9e-108 396.0 477 50.1
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 8.7e-108 394.8 511 48.5
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 3.3e-107 392.9 343 62.1
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 4.8e-106 389.0 393 56.2
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 6.3e-106 388.7 343 59.5
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 3.1e-105 386.3 485 51.8
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 2.2e-103 380.2 476 48.7
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 4.2e-102 375.9 503 45.9
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 4.6e-101 372.5 427 52.9
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 1.4e-97 360.9 503 43.5
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 1.1e-94 351.3 446 48.4
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 7.2e-86 322.0 375 49.3
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 4.7e-85 319.3 241 65.6
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 2.7e-72 276.9 435 41.1
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 4.5e-72 276.2 392 42.9
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 3.8e-71 273.1 520 38.1
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 9.4e-70 268.5 178 77.5
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 2.2e-66 257.3 181 73.5
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 2.4e-65 253.8 182 73.1
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 2.4e-65 253.8 359 46.0
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 1.2e-61 241.5 176 70.5
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 1.0e-60 238.4 483 38.1
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 5.2e-52 209.5 394 35.0
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 3.3e-46 190.3 130 73.1
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 1.6e-45 188.0 261 46.0
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 4.4e-43 179.9 382 34.8
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 3.9e-39 166.8 262 39.3
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 6.8e-36 156.0 231 45.0
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 1.6e-32 144.8 176 51.1
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 3.0e-31 140.6 370 32.7
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 3.9e-31 140.2 127 70.9
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 3.3e-30 137.1 107 61.7
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 2.0e-27 127.9 204 45.6
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 8.4e-26 122.5 137 48.9
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 1.7e-23 114.8 133 57.9
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 1.5e-22 111.7 144 50.7
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 2.1e-21 107.8 134 54.5
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 3.6e-21 107.1 151 47.7
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 8.1e-21 105.9 90 56.7
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 3.8e-18 97.1 167 43.1
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 3.9e-15 87.0 57 66.7
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 8.1e-13 79.3 234 25.6
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 1.1e-12 79.0 99 41.4
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 1.7e-10 71.6 84 56.0
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 4.9e-10 70.1 63 61.9
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 3.5e-08 63.9 42 71.4
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 7.9e-08 62.8 43 74.4
SHI33154 Sapria himalayana HOM05D004146 ORTHO05D004843 8.7e-07 59.3 50 60.0
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 1.5e-06 58.5 42 71.4
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 1.9e-06 58.2 40 75.0
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.9e-06 58.2 100 33.0
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 3.3e-06 57.4 32 87.5


User provided reference genes

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