Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p37170 Brassica napus HOM05D006053 ORTHO05D041902 4.4e-42 174.1 81 100.0
AT3G55340 Arabidopsis thaliana HOM05D006053 ORTHO05D008381 3.0e-14 81.6 53 71.7
AL5G36480 Arabidopsis lyrata HOM05D006053 ORTHO05D008381 3.9e-14 81.3 47 76.6
BcaB01g00113 Brassica carinata HOM05D006053 ORTHO05D008381 6.6e-14 80.5 52 71.2
Sp5g07130 Schrenkiella parvula HOM05D006053 ORTHO05D008381 6.6e-14 80.5 52 73.1
Aa31LG10G10350 Aethionema arabicum HOM05D006053 ORTHO05D008381 8.6e-14 80.1 44 75.0
CARHR165350 Cardamine hirsuta HOM05D006053 ORTHO05D008381 1.5e-13 79.3 52 69.2
A09p48230 Brassica napus HOM05D006053 ORTHO05D008381 1.9e-13 79.0 52 69.2
C08p30500 Brassica napus HOM05D006053 ORTHO05D008381 1.9e-13 79.0 52 69.2
BolC8t50669H Brassica oleracea HOM05D006053 ORTHO05D008381 1.9e-13 79.0 52 69.2
BraA09t40276Z Brassica rapa HOM05D006053 ORTHO05D008381 1.9e-13 79.0 52 69.2
Carub.0005s2199 Capsella rubella HOM05D006053 ORTHO05D008381 7.3e-13 77.0 53 67.9
BcaB02g08428 Brassica carinata HOM05D006053 ORTHO05D008381 5.2e-11 70.9 50 76.0
THA.LOC104824082 Tarenaya hassleriana HOM05D006053 ORTHO05D008381 2.6e-10 68.6 43 69.8
MBI05_g35605_MAGBIO Magnolia biondii HOM05D006053 ORTHO05D008381 1.4e-08 62.8 49 53.1
PSO384G4800 Papaver somniferum HOM05D006053 ORTHO05D008381 1.4e-08 62.8 38 68.4
Atru.chr12.522 Acer truncatum HOM05D006053 ORTHO05D008381 1.9e-08 62.4 50 56.0
Actinidia02973 Actinidia chinensis HOM05D006053 ORTHO05D008381 1.9e-08 62.4 45 53.3
Thecc.10G048700 Theobroma cacao HOM05D006053 ORTHO05D008381 1.9e-08 62.4 49 49.0
COL.COLO4_14945 Corchorus olitorius HOM05D006053 ORTHO05D008381 2.4e-08 62.0 49 46.9
Prupe.2G229600 Prunus persica HOM05D006053 ORTHO05D008381 2.4e-08 62.0 45 55.6
Ciclev10031409m.g Citrus clementina HOM05D006053 ORTHO05D008381 3.2e-08 61.6 49 57.1
PSO339G3195 Papaver somniferum HOM05D006053 ORTHO05D008381 3.2e-08 61.6 38 65.8
BraA04t16170Z Brassica rapa HOM05D006053 ORTHO05D041902 4.1e-08 61.2 36 83.3
Eucgr.G02908 Eucalyptus grandis HOM05D006053 ORTHO05D008381 4.1e-08 61.2 40 62.5
MD01G1122100 Malus domestica HOM05D006053 ORTHO05D008381 4.1e-08 61.2 40 60.0
MD07G1191600 Malus domestica HOM05D006053 ORTHO05D008381 4.1e-08 61.2 40 60.0
Nn2g10473 Nelumbo nucifera HOM05D006053 ORTHO05D008381 4.1e-08 61.2 40 62.5
Cfa001523 Carpinus fangiana HOM05D006053 ORTHO05D008381 7.1e-08 60.5 45 57.8
Haze_17018 Corylus avellana HOM05D006053 ORTHO05D008381 7.1e-08 60.5 45 57.8
FAN01G1874 Fragaria x ananassa HOM05D006053 ORTHO05D008381 7.1e-08 60.5 40 57.5
Gohir.D10G223000 Gossypium hirsutum HOM05D006053 ORTHO05D008381 7.1e-08 60.5 45 51.1
Prupe.2G229700 Prunus persica HOM05D006053 ORTHO05D008381 7.1e-08 60.5 45 55.6
Duzib114G0287 Durio zibethinus HOM05D006053 ORTHO05D008381 9.2e-08 60.1 45 48.9
Glyma.20G098800 Glycine max HOM05D006053 ORTHO05D008381 9.2e-08 60.1 45 51.1
Manes.10G035900 Manihot esculenta HOM05D006053 ORTHO05D008381 9.2e-08 60.1 40 55.0
Nitab4.5_0000120g0180 Nicotiana tabacum HOM05D006053 ORTHO05D008381 9.2e-08 60.1 45 55.6
Nitab4.5_0001277g0050 Nicotiana tabacum HOM05D006053 ORTHO05D008381 9.2e-08 60.1 45 55.6
Gohir.A10G214200 Gossypium hirsutum HOM05D006053 ORTHO05D008381 1.2e-07 59.7 45 51.1
PGR142G2322 Punica granatum HOM05D006053 ORTHO05D008381 1.2e-07 59.7 40 57.5
RcHm_v2.0_Chr1g0365851 Rosa chinensis HOM05D006053 ORTHO05D008381 1.2e-07 59.7 40 57.5
CDE09G1153 Ceratophyllum demersum HOM05D006053 ORTHO05D008381 1.6e-07 59.3 40 55.0
Gorai.011G253900 Gossypium raimondii HOM05D006053 ORTHO05D008381 1.6e-07 59.3 45 51.1
Peaxi162Scf00408g00034 Petunia axillaris HOM05D006053 ORTHO05D008381 1.6e-07 59.3 49 51.0
TAR623G1578 Trochodendron aralioides HOM05D006053 ORTHO05D008381 1.6e-07 59.3 45 55.6
CiPaw.02G181100 Carya illinoinensis HOM05D006053 ORTHO05D008381 2.1e-07 58.9 45 55.6
FvH4_7g21531 Fragaria vesca HOM05D006053 ORTHO05D008381 2.1e-07 58.9 40 55.0
FAN03G0601 Fragaria x ananassa HOM05D006053 ORTHO05D008381 2.1e-07 58.9 40 55.0
FAN03G0613 Fragaria x ananassa HOM05D006053 ORTHO05D008381 2.1e-07 58.9 40 55.0
FAN06G2982 Fragaria x ananassa HOM05D006053 ORTHO05D008381 2.1e-07 58.9 40 55.0
FAN06G4406 Fragaria x ananassa HOM05D006053 ORTHO05D008381 2.1e-07 58.9 40 55.0
FAN10G2741 Fragaria x ananassa HOM05D006053 ORTHO05D008381 2.1e-07 58.9 40 55.0
TWI63G0066 Tripterygium wilfordii HOM05D006053 ORTHO05D008381 2.1e-07 58.9 45 53.3
VMungo0720G3082 Vigna mungo HOM05D006053 ORTHO05D008381 2.1e-07 58.9 45 51.1
MSTRG.23542 Avicennia marina HOM05D006053 ORTHO05D008381 2.7e-07 58.5 45 55.6
Cpa.g.sc1.353 Carica papaya HOM05D006053 ORTHO05D008381 2.7e-07 58.5 40 55.0
Cc02_g08350 Coffea canephora HOM05D006053 ORTHO05D008381 2.7e-07 58.5 49 53.1
AUR62022513 Chenopodium quinoa HOM05D006053 ORTHO05D008381 3.5e-07 58.2 40 52.5
MELO3C023836.2 Cucumis melo HOM05D006053 ORTHO05D008381 3.5e-07 58.2 45 51.1
Sc20g0002520 Simmondsia chinensis HOM05D006053 ORTHO05D008381 3.5e-07 58.2 49 55.1
SGA_v2.0_scaffold115G32148 Striga asiatica HOM05D006053 ORTHO05D008381 3.5e-07 58.2 38 55.3
Dinv25975 Davidia involucrata HOM05D006053 ORTHO05D008381 4.6e-07 57.8 45 51.1
Hma1.2p1_0192F.1_g083600 Hydrangea macrophylla HOM05D006053 ORTHO05D008381 4.6e-07 57.8 40 55.0
Oeu056126.3 Olea europaea HOM05D006053 ORTHO05D008381 4.6e-07 57.8 40 55.0
HPP92_006599 Vanilla planifolia HOM05D006053 ORTHO05D008381 4.6e-07 57.8 44 47.7
GSVIVG01016604001 Vitis vinifera HOM05D006053 ORTHO05D008381 6.0e-07 57.4 45 48.9
Aqoxy2G02006 Aquilegia oxysepala HOM05D006053 ORTHO05D008381 7.8e-07 57.0 38 52.6
ECA232G2518 Erigeron canadensis HOM05D006053 ORTHO05D008381 7.8e-07 57.0 45 46.7
Migut.L00294 Erythranthe guttata HOM05D006053 ORTHO05D008381 7.8e-07 57.0 49 46.9
CSS0026153 Camellia sinensis var. sinensis HOM05D006053 ORTHO05D008381 1.0e-06 56.6 40 52.5
Phvul.007G011000 Phaseolus vulgaris HOM05D006053 ORTHO05D008381 1.0e-06 56.6 46 47.8
Potri.010G209701 Populus trichocarpa HOM05D006053 ORTHO05D008381 1.0e-06 56.6 38 57.9
Sabra10G0162000 Salix brachista HOM05D006053 ORTHO05D008381 1.0e-06 56.6 38 57.9
Solyc06g018110.3 Solanum lycopersicum HOM05D006053 ORTHO05D008381 1.0e-06 56.6 40 55.0
Sopen06g008460 Solanum pennellii HOM05D006053 ORTHO05D008381 1.0e-06 56.6 40 55.0
Ah.16g107460 Amaranthus hybridus HOM05D006053 ORTHO05D008381 1.3e-06 56.2 38 60.5
CsaV3_5G006870 Cucumis sativus L. HOM05D006053 ORTHO05D008381 1.3e-06 56.2 45 51.1
HanXRQChr09g0247701 Helianthus annuus HOM05D006053 ORTHO05D008381 1.3e-06 56.2 45 46.7
QL08p058728 Quercus lobata HOM05D006053 ORTHO05D008381 1.3e-06 56.2 38 55.3
RhsimUnG0003300 Rhododendron simsii HOM05D006053 ORTHO05D008381 1.3e-06 56.2 40 50.0
PGSC0003DMG400031213 Solanum tuberosum HOM05D006053 ORTHO05D008381 1.3e-06 56.2 40 55.0
arahy.Tifrunner.gnm1.ann1.JRYV00 Arachis hypogaea HOM05D006053 ORTHO05D008381 1.7e-06 55.8 40 52.5
AUR62038385 Chenopodium quinoa HOM05D006053 ORTHO05D008381 1.7e-06 55.8 40 50.0
AUR62038388 Chenopodium quinoa HOM05D006053 ORTHO05D008381 1.7e-06 55.8 40 50.0
Lsat_1_v5_gn_9_66300 Lactuca sativa HOM05D006053 ORTHO05D008381 1.7e-06 55.8 45 46.7
Sed0000212 Sechium edule HOM05D006053 ORTHO05D008381 2.3e-06 55.5 38 57.9
Zm00001eb266400 Zea mays HOM05D006053 ORTHO05D008381 2.3e-06 55.5 46 43.5
EL10As19g24197 Beta vulgaris HOM05D006053 ORTHO05D008381 3.0e-06 55.1 53 50.9
Lalb_Chr06g0164221 Lupinus albus HOM05D006053 ORTHO05D008381 3.0e-06 55.1 38 52.6
Hund20006 Selenicereus undatus HOM05D006053 ORTHO05D008381 3.0e-06 55.1 42 50.0
arahy.Tifrunner.gnm1.ann1.AZ4556 Arachis hypogaea HOM05D006053 ORTHO05D008381 3.9e-06 54.7 40 52.5
Lj8C88T8 Lonicera japonica HOM05D006053 ORTHO05D008381 3.9e-06 54.7 45 48.9
Glyma.10G290400 Glycine max HOM05D006053 ORTHO05D008381 6.6e-06 53.9 45 46.7
Rhsim03G0127000 Rhododendron simsii HOM05D006053 ORTHO05D008381 6.6e-06 53.9 40 47.5


User provided reference genes

Program Settings