Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p13090 Brassica napus HOM05D000773 ORTHO05D000588 1.1e-86 323.2 158 100.0
BcaC02g11623 Brassica carinata HOM05D002759 ORTHO05D003290 1.5e-86 322.8 157 100.0
C04p12990 Brassica napus HOM05D000773 ORTHO05D000588 1.5e-86 322.8 157 100.0
BolC4t22942H Brassica oleracea HOM05D002759 ORTHO05D003290 2.7e-80 302.0 157 94.9
BcaB02g09105 Brassica carinata HOM05D002759 ORTHO05D003290 1.4e-65 253.1 173 80.3
C04p13040 Brassica napus HOM05D000773 ORTHO05D000588 7.4e-62 240.7 118 100.0
C04p07370 Brassica napus HOM05D002759 ORTHO05D003290 4.8e-61 238.0 157 79.6
A05p06000 Brassica napus HOM05D000773 ORTHO05D000588 7.0e-52 207.6 172 62.8
BraA05t19563Z Brassica rapa HOM05D000773 ORTHO05D000588 9.1e-52 207.2 172 62.8
BcaC02g12157 Brassica carinata HOM05D000773 ORTHO05D000588 1.8e-47 193.0 185 60.0
C04p06930 Brassica napus HOM05D000773 ORTHO05D000588 6.8e-47 191.0 177 59.3
BolC4t22314H Brassica oleracea HOM05D000773 ORTHO05D000588 6.8e-47 191.0 177 59.3
AL4G45260 Arabidopsis lyrata HOM05D000773 ORTHO05D000588 1.5e-38 163.3 215 47.0
Sp4g28100 Schrenkiella parvula HOM05D000773 ORTHO05D000588 3.4e-38 162.2 217 46.1
AT2G46040 Arabidopsis thaliana HOM05D000773 ORTHO05D000588 1.3e-37 160.2 215 44.7
Carub.0004s2873 Capsella rubella HOM05D000773 ORTHO05D000588 1.7e-37 159.8 215 44.7
BraA04t18885Z Brassica rapa HOM05D000773 ORTHO05D000588 1.4e-36 156.8 182 48.9
Thhalv10001382m.g Eutrema salsugineum HOM05D000773 ORTHO05D000588 5.4e-36 154.8 202 46.5
A04p34240 Brassica napus HOM05D000773 ORTHO05D000588 1.2e-35 153.7 180 48.9
BolC4t28702H Brassica oleracea HOM05D000773 ORTHO05D000588 1.0e-34 150.6 182 49.5
C04p72060 Brassica napus HOM05D000773 ORTHO05D000588 2.3e-34 149.4 185 48.6
CARHR141300 Cardamine hirsuta HOM05D000773 ORTHO05D000588 2.1e-32 142.9 204 44.6
Aa31LG1G27440 Aethionema arabicum HOM05D000773 ORTHO05D000588 1.8e-28 129.8 256 35.9
BolC4t21843H Brassica oleracea HOM05D000773 ORTHO05D000588 4.3e-25 118.6 161 47.2
C04p01930 Brassica napus HOM05D000773 ORTHO05D000588 9.5e-25 117.5 161 46.6
COL.COLO4_30909 Corchorus olitorius HOM05D000773 ORTHO05D000286 9.2e-20 100.9 171 36.8
Actinidia02834 Actinidia chinensis HOM05D000773 ORTHO05D000588 2.7e-19 99.4 183 36.6
Dinv43837 Davidia involucrata HOM05D000773 ORTHO05D000588 6.0e-19 98.2 215 33.0
Lj7A510G35 Lonicera japonica HOM05D000773 ORTHO05D000588 1.7e-18 96.7 162 34.6
COL.COLO4_22968 Corchorus olitorius HOM05D000773 ORTHO05D000588 6.6e-18 94.7 171 35.7
Dinv32496 Davidia involucrata HOM05D000773 ORTHO05D000588 1.9e-17 93.2 214 31.3
Cpa.g.sc1258.5 Carica papaya HOM05D000773 ORTHO05D000588 4.3e-17 92.0 254 29.1
Peaxi162Scf00191g01433 Petunia axillaris HOM05D000773 ORTHO05D000588 4.3e-17 92.0 179 34.1
vmacro20920 Vaccinium macrocarpon HOM05D000773 ORTHO05D000588 3.6e-16 89.0 180 33.9
COL.COLO4_16589 Corchorus olitorius HOM05D000773 ORTHO05D000588 5.8e-14 81.6 172 34.3
Lsat_1_v5_gn_3_137381 Lactuca sativa HOM05D000773 ORTHO05D000588 9.8e-14 80.9 169 27.8
ECA240G3418 Erigeron canadensis HOM05D000773 ORTHO05D000588 3.7e-13 79.0 166 31.3
Duzib138G1265 Durio zibethinus HOM05D000773 ORTHO05D000588 4.9e-13 78.6 264 27.7
HanXRQChr13g0426641 Helianthus annuus HOM05D000773 ORTHO05D000588 4.9e-13 78.6 188 30.9
Atru.chr5.519 Acer truncatum HOM05D000773 ORTHO05D000588 2.4e-12 76.3 222 28.4
SalBow3G0125 Salvia bowleyana HOM05D000773 ORTHO05D000588 7.1e-12 74.7 220 30.5
Gohir.A07G141700 Gossypium hirsutum HOM05D000773 ORTHO05D000588 9.2e-12 74.3 106 37.7
Thecc.01G357000 Theobroma cacao HOM05D000773 ORTHO05D000588 1.2e-11 73.9 276 26.4
Gohir.D07G147200 Gossypium hirsutum HOM05D000773 ORTHO05D000588 1.6e-11 73.6 116 35.3
Gorai.001G168400 Gossypium raimondii HOM05D000773 ORTHO05D000588 1.6e-11 73.6 116 35.3
Sabra14G0062900 Salix brachista HOM05D000773 ORTHO05D000588 1.6e-11 73.6 113 39.8
Solyc05g049960.4 Solanum lycopersicum HOM05D000773 ORTHO05D000588 2.7e-11 72.8 245 27.3
PGSC0003DMG400021657 Solanum tuberosum HOM05D000773 ORTHO05D000588 3.5e-11 72.4 251 26.3
Sopen05g028320 Solanum pennellii HOM05D000773 ORTHO05D000588 4.6e-11 72.0 248 26.2
SHI13424 Sapria himalayana HOM05D000773 ORTHO05D000588 7.8e-11 71.2 222 29.7
MSTRG.17282 Avicennia marina HOM05D000773 ORTHO05D000588 1.0e-10 70.9 210 25.7
FAN10G1151 Fragaria x ananassa HOM05D000773 ORTHO05D000588 2.3e-10 69.7 240 26.7
FAN10G2616 Fragaria x ananassa HOM05D000773 ORTHO05D000588 2.3e-10 69.7 240 26.7
Potri.014G086700 Populus trichocarpa HOM05D000773 ORTHO05D000588 3.0e-10 69.3 113 38.1
Duzib268G0149 Durio zibethinus HOM05D000773 ORTHO05D000588 8.6e-10 67.8 281 25.3
FAN03G0730 Fragaria x ananassa HOM05D000773 ORTHO05D000588 8.6e-10 67.8 240 28.3
Potri.002G161100 Populus trichocarpa HOM05D000773 ORTHO05D000588 8.6e-10 67.8 134 35.1
FAN01G2141 Fragaria x ananassa HOM05D000773 ORTHO05D000588 1.1e-09 67.4 240 27.1
Haze_15529 Corylus avellana HOM05D000773 ORTHO05D000588 1.5e-09 67.0 98 37.8
GSVIVG01027004001 Vitis vinifera HOM05D000773 ORTHO05D000588 1.5e-09 67.0 235 26.8
COL.COLO4_12732 Corchorus olitorius HOM05D000773 ORTHO05D000588 1.9e-09 66.6 286 24.5
Ciclev10019137m.g Citrus clementina HOM05D000773 ORTHO05D000588 2.5e-09 66.2 105 38.1
MELO3C016363.2 Cucumis melo HOM05D000773 ORTHO05D000588 4.3e-09 65.5 240 26.7
Manes.01G255100 Manihot esculenta HOM05D000773 ORTHO05D000588 4.3e-09 65.5 112 34.8
Sabra02G0128100 Salix brachista HOM05D000773 ORTHO05D000588 7.3e-09 64.7 111 40.5
Hund11455 Selenicereus undatus HOM05D000773 ORTHO05D000588 7.3e-09 64.7 206 27.7
Gohir.A12G108400 Gossypium hirsutum HOM05D000773 ORTHO05D000588 1.2e-08 63.9 277 23.5
Gorai.008G120900 Gossypium raimondii HOM05D000773 ORTHO05D000588 2.1e-08 63.2 98 35.7
Sc26g0000860 Simmondsia chinensis HOM05D000773 ORTHO05D000588 2.1e-08 63.2 77 42.9
Duzib068G0607 Durio zibethinus HOM05D000773 ORTHO05D000588 3.6e-08 62.4 189 30.7
QL04p054019 Quercus lobata HOM05D000773 ORTHO05D000588 8.1e-08 61.2 117 34.2
Migut.B01773 Erythranthe guttata HOM05D000773 ORTHO05D000588 1.1e-07 60.8 101 38.6
MELO3C006099.2 Cucumis melo HOM05D000773 ORTHO05D000588 1.4e-07 60.5 161 31.7
TWI59G0423 Tripterygium wilfordii HOM05D000773 ORTHO05D000588 1.4e-07 60.5 97 37.1
Nitab4.5_0001702g0140 Nicotiana tabacum HOM05D000773 ORTHO05D000588 3.1e-07 59.3 41 58.5
Sopen01g038590 Solanum pennellii HOM05D000773 ORTHO05D000588 3.1e-07 59.3 49 51.0
Nitab4.5_0003779g0070 Nicotiana tabacum HOM05D000773 ORTHO05D000588 6.8e-07 58.2 64 43.8
Sed0007350 Sechium edule HOM05D000773 ORTHO05D000588 6.8e-07 58.2 64 43.8
AUR62022587 Chenopodium quinoa HOM05D000773 ORTHO05D000588 8.9e-07 57.8 69 44.9
ClCG07G008230 Citrullus lanatus HOM05D000773 ORTHO05D000588 8.9e-07 57.8 230 24.8
Solyc01g094820.3 Solanum lycopersicum HOM05D000773 ORTHO05D000588 8.9e-07 57.8 49 49.0
AUR62004382 Chenopodium quinoa HOM05D000773 ORTHO05D000588 1.2e-06 57.4 158 28.5
TWI32G0558 Tripterygium wilfordii HOM05D000773 ORTHO05D000588 1.2e-06 57.4 214 26.2
Nn1g01577 Nelumbo nucifera HOM05D000773 ORTHO05D000588 1.5e-06 57.0 64 45.3
VMungo0331G1103 Vigna mungo HOM05D000773 ORTHO05D000588 1.5e-06 57.0 64 39.1
MD01G1066000 Malus domestica HOM05D000773 ORTHO05D000588 2.0e-06 56.6 64 45.3
Peaxi162Scf00008g02527 Petunia axillaris HOM05D000773 ORTHO05D000588 2.0e-06 56.6 50 50.0
BcaC04g21135 Brassica carinata HOM05D000773 ORTHO05D000588 2.6e-06 56.2 206 27.2
C09p35170 Brassica napus HOM05D000773 ORTHO05D000588 2.6e-06 56.2 206 27.2
BolC9t56363H Brassica oleracea HOM05D000773 ORTHO05D000588 2.6e-06 56.2 206 27.2
Glyma.07G069150 Glycine max HOM05D000773 ORTHO05D000588 2.6e-06 56.2 64 43.8
PGSC0003DMG400000178 Solanum tuberosum HOM05D000773 ORTHO05D000588 3.4e-06 55.8 41 56.1
Cpa.g.sc214.10 Carica papaya HOM05D000773 ORTHO05D000588 4.4e-06 55.5 213 28.2
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 4.4e-06 55.5 73 41.1
PGSC0003DMG400019394 Solanum tuberosum HOM05D000773 ORTHO05D000588 4.4e-06 55.5 107 33.6
arahy.Tifrunner.gnm1.ann1.Y4B6Y9 Arachis hypogaea HOM05D000773 ORTHO05D000588 5.8e-06 55.1 46 52.2
CAN.G265.1 Capsicum annuum HOM05D000773 ORTHO05D000588 5.8e-06 55.1 50 46.0
Glyma.18G234900 Glycine max HOM05D000773 ORTHO05D000588 5.8e-06 55.1 73 37.0
PSO478G3420 Papaver somniferum HOM05D000773 ORTHO05D000588 5.8e-06 55.1 113 31.0
arahy.Tifrunner.gnm1.ann1.E2H3M1 Arachis hypogaea HOM05D000773 ORTHO05D000588 7.6e-06 54.7 42 57.1
arahy.Tifrunner.gnm1.ann1.H31DAJ Arachis hypogaea HOM05D000773 ORTHO05D000588 7.6e-06 54.7 42 57.1
A09p27760 Brassica napus HOM05D000773 ORTHO05D000588 7.6e-06 54.7 206 25.7
BraA09t38346Z Brassica rapa HOM05D000773 ORTHO05D000588 7.6e-06 54.7 206 25.7
CAN.G78.96 Capsicum annuum HOM05D000773 ORTHO05D000588 7.6e-06 54.7 39 59.0
Cc02_g38230 Coffea canephora HOM05D000773 ORTHO05D000588 7.6e-06 54.7 250 23.6
Gohir.D12G111600 Gossypium hirsutum HOM05D000773 ORTHO05D000588 7.6e-06 54.7 49 51.0
arahy.Tifrunner.gnm1.ann1.8B3E5K Arachis hypogaea HOM05D000773 ORTHO05D000588 9.9e-06 54.3 46 52.2
arahy.Tifrunner.gnm1.ann1.J3C0MM Arachis hypogaea HOM05D000773 ORTHO05D000588 9.9e-06 54.3 46 52.2
COL.COLO4_13883 Corchorus olitorius HOM05D000407 ORTHO05D000588 9.9e-06 54.3 108 31.5
HanXRQChr13g0394511 Helianthus annuus HOM05D000773 ORTHO05D000588 9.9e-06 54.3 156 29.5
Prupe.2G173100 Prunus persica HOM05D000773 ORTHO05D000588 9.9e-06 54.3 86 37.2


User provided reference genes

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