Gene: AT2G46040
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT2G46040
- Transcript Identifier AT2G46040.2
- Gene Type Coding gene
- Location Chr2 : 18935684-18937849 : negative
Gene Family Information
- ID HOM05D000773
- #Genes/#Species 761/96
- Phylogenetic origin
- ID ORTHO05D000588
- #Genes/#Species 758/96
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT2G46040.2
- Alias ARID1,AT-Rich Interacting Domain 1
- uniprot Q84JT7
Descriptions
- Description ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein
- Computational description ARID/BRIGHT DNA-binding domain;ELM2 domain protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: sperm cell, male gametophyte, cultured cell, seed, pollen tube; EXPRESSED DURING: M germinated pollen stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ELM2 (InterPro:IPR000949), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain;ELM2 domain protein (TAIR:AT4G11400.1); Has 198 Blast hits to 184 proteins in 31 species: Archae - 0; Bacteria - 1; Metazoa - 35; Fungi - 2; Plants - 156; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010628 | IPI | Gene Ontology | positive regulation of gene expression | 1 |
| GO:0016575 | IMP | Gene Ontology | histone deacetylation | 1 |
| GO:0048235 | IMP | Gene Ontology | pollen sperm cell differentiation | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0000118 | IPI | Gene Ontology | histone deacetylase complex | 1 |
| GO:0048555 | IDA | Gene Ontology | generative cell nucleus | 1 |
| GO:0048556 | IDA | Gene Ontology | microsporocyte nucleus | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.5.25 | RNA biosynthesis.transcriptional regulation.transcription factor (ARID) |