Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 3.8e-140 501.5 259 100.0
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 3.8e-140 501.5 259 100.0
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 1.2e-138 496.5 259 98.1
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 4.2e-131 471.5 259 95.0
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 2.8e-130 468.8 259 94.6
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 4.3e-123 444.9 259 90.7
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 3.7e-119 431.8 254 89.0
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 3.7e-119 431.8 254 88.6
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.8e-106 389.0 263 81.4
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 2.4e-102 375.9 256 79.7
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 5.4e-102 374.8 256 77.7
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 1.1e-99 367.1 256 76.2
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 2.1e-98 362.8 260 76.2
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 9.9e-80 300.8 255 64.3
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 1.3e-79 300.4 253 64.8
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.1e-78 297.4 250 63.6
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 1.1e-78 297.4 257 62.3
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.4e-78 296.2 254 63.8
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 2.4e-78 296.2 262 62.6
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 5.4e-78 295.0 254 61.8
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 7.1e-78 294.7 258 64.3
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 9.3e-78 294.3 258 61.6
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 1.2e-77 293.9 257 63.0
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.6e-77 293.5 250 64.4
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 1.6e-77 293.5 262 62.6
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 2.7e-77 292.7 262 62.2
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 3.5e-77 292.4 254 63.0
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.6e-77 292.0 265 63.4
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 6.0e-77 291.6 257 62.6
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 6.0e-77 291.6 254 61.0
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 3.9e-76 288.9 257 62.3
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 8.7e-76 287.7 256 61.3
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 1.9e-75 286.6 264 61.0
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 7.4e-75 284.6 266 61.3
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 2.1e-74 283.1 199 70.9
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 4.8e-74 282.0 225 65.8
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 8.1e-74 281.2 260 61.5
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 2.4e-73 279.6 262 61.1
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 3.1e-73 279.3 246 61.8
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 4.0e-73 278.9 264 60.2
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 5.3e-73 278.5 260 62.3
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 6.9e-73 278.1 259 60.6
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 9.0e-73 277.7 246 61.8
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 1.2e-72 277.3 254 61.4
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 1.5e-72 276.9 223 62.3
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 1.5e-72 276.9 254 61.0
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 2.6e-72 276.2 264 59.5
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 2.6e-72 276.2 251 61.8
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 9.9e-72 274.2 254 59.1
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 9.9e-72 274.2 255 59.6
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.3e-71 273.9 252 60.7
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.3e-71 273.9 252 60.7
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 1.3e-71 273.9 262 61.1
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 2.9e-71 272.7 243 60.5
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 3.8e-71 272.3 254 60.6
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 4.9e-71 271.9 260 60.0
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 6.4e-71 271.6 262 60.3
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 8.4e-71 271.2 261 59.8
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 1.1e-70 270.8 254 59.4
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 1.9e-70 270.0 185 69.7
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 1.9e-70 270.0 249 61.0
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 2.5e-70 269.6 261 60.5
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 2.5e-70 269.6 255 58.4
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 2.5e-70 269.6 243 59.7
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 3.2e-70 269.2 258 58.1
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 4.2e-70 268.9 190 67.9
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 4.2e-70 268.9 261 60.5
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 4.2e-70 268.9 254 59.4
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 5.5e-70 268.5 242 60.3
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 5.5e-70 268.5 180 72.8
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 5.5e-70 268.5 241 61.0
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 5.5e-70 268.5 247 60.3
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 7.1e-70 268.1 240 60.4
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 7.1e-70 268.1 187 69.5
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 7.1e-70 268.1 257 61.1
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 7.1e-70 268.1 245 58.8
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 7.1e-70 268.1 254 58.3
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 9.3e-70 267.7 262 59.9
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 9.3e-70 267.7 219 64.4
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 9.3e-70 267.7 258 57.8
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 1.2e-69 267.3 255 58.8
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 1.2e-69 267.3 243 60.1
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.1e-69 266.5 244 59.8
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 2.1e-69 266.5 201 67.2
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.7e-69 266.2 223 61.4
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 3.5e-69 265.8 259 58.7
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.5e-69 265.8 258 57.8
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 6.0e-69 265.0 262 57.6
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 6.0e-69 265.0 247 57.5
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 6.0e-69 265.0 259 60.6
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 6.0e-69 265.0 257 59.1
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.8e-68 263.5 254 57.5
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 1.8e-68 263.5 256 59.0
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 3.0e-68 262.7 261 56.7
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.0e-68 262.7 255 56.5
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 3.0e-68 262.7 252 58.7
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 3.0e-68 262.7 251 60.2
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 3.0e-68 262.7 248 58.9
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 3.9e-68 262.3 250 59.6
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 3.9e-68 262.3 248 59.3
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 6.7e-68 261.5 219 60.3
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 8.7e-68 261.2 244 57.8
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 1.1e-67 260.8 240 59.2
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 1.5e-67 260.4 261 56.7
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 1.5e-67 260.4 245 60.0
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 2.5e-67 259.6 238 59.7
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 4.3e-67 258.8 245 58.0
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 9.6e-67 257.7 185 69.2
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 9.6e-67 257.7 226 61.9
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 9.6e-67 257.7 253 62.1
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 2.8e-66 256.1 244 57.0
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 3.7e-66 255.8 246 57.3
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 3.7e-66 255.8 257 54.9
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 2.4e-65 253.1 264 54.9
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 1.5e-64 250.4 251 56.2
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.6e-64 249.6 243 57.6
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 2.9e-63 246.1 205 62.0
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 2.7e-61 239.6 245 58.4
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 3.9e-60 235.7 208 60.6
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 8.7e-60 234.6 228 56.1
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 4.3e-59 232.3 262 55.0
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 4.3e-59 232.3 170 69.4
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 2.8e-58 229.6 177 62.1
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 6.3e-58 228.4 196 59.2
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 6.3e-58 228.4 183 65.0
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 1.4e-57 227.3 215 57.7
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.4e-57 227.3 180 61.7
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 2.4e-57 226.5 176 63.1
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 5.3e-57 225.3 229 56.8
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 1.5e-56 223.8 192 57.3
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 2.0e-56 223.4 220 53.6
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 2.6e-56 223.0 255 52.5
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.1e-54 217.6 178 60.1
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 4.3e-51 205.7 141 68.8
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 2.8e-50 203.0 153 64.7
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 6.9e-49 198.4 129 72.9
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.5e-48 195.7 223 49.8
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.1e-46 191.0 257 50.2
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.7e-45 185.7 120 77.5
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 3.3e-43 179.5 225 47.6
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 1.3e-42 177.6 220 50.9
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 1.5e-40 170.6 119 68.1
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 2.2e-39 166.8 221 46.2
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 6.5e-39 165.2 127 67.7
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 5.5e-38 162.2 195 50.3
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 7.2e-38 161.8 252 44.8
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 2.7e-37 159.8 231 42.0
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 8.0e-37 158.3 181 49.7
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.4e-36 157.5 169 52.1
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 1.3e-34 151.0 252 44.0
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 1.7e-34 150.6 95 74.7
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 2.8e-34 149.8 211 42.7
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 2.0e-32 143.7 173 49.7
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 3.2e-30 136.3 169 49.1
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 2.1e-29 133.7 76 80.3
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 2.1e-29 133.7 81 76.5
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 1.4e-25 120.9 78 75.6
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 3.8e-23 112.8 116 54.3
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 2.2e-18 97.1 71 64.8
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 3.7e-18 96.3 78 61.5
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 5.4e-17 92.4 103 44.7
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 2.3e-15 87.0 88 52.3
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 1.5e-14 84.3 51 82.4
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 1.2e-13 81.3 96 51.0
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 1.2e-11 74.7 46 76.1
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 4.4e-11 72.8 50 68.0
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 2.8e-10 70.1 193 31.6
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 2.0e-08 63.9 135 34.8
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 3.5e-08 63.2 55 54.5
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 5.9e-08 62.4 138 33.3
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 1.0e-07 61.6 135 34.1
BcaC01g01539 Brassica carinata HOM05D004152 ORTHO05D004878 5.6e-06 55.8 62 48.4
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 5.6e-06 55.8 107 37.4
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 5.6e-06 55.8 198 29.3


User provided reference genes

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