Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 7.8e-261 903.3 462 100.0
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 1.0e-220 770.0 473 88.2
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 2.9e-215 751.9 470 86.4
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 9.4e-206 720.3 467 83.3
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 2.5e-190 669.1 490 76.7
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 5.2e-188 661.4 466 75.1
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 1.3e-186 656.8 491 76.0
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 1.6e-184 649.8 491 75.8
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 2.7e-184 649.0 491 74.3
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 8.5e-183 644.0 493 74.0
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 1.8e-180 636.3 493 73.4
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 3.4e-179 632.1 461 71.6
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 6.5e-175 617.8 537 66.1
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 3.0e-172 609.0 463 69.8
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 4.1e-169 598.6 437 72.1
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 1.0e-159 567.4 431 70.3
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 1.2e-157 560.5 460 65.4
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 5.2e-156 555.1 324 87.0
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 1.6e-141 506.9 475 62.1
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 4.7e-141 505.4 470 58.7
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 1.0e-79 301.6 450 41.6
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 8.8e-79 298.5 411 47.4
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 1.3e-77 294.7 444 41.4
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 3.7e-77 293.1 423 40.9
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 3.1e-76 290.0 435 39.5
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 4.1e-76 289.7 457 40.5
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 7.0e-76 288.9 455 40.9
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 7.0e-76 288.9 433 41.1
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 5.9e-75 285.8 305 50.8
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 1.3e-74 284.6 423 41.6
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 1.7e-74 284.3 449 39.4
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 3.8e-74 283.1 438 40.2
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 5.0e-74 282.7 426 41.8
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 8.5e-74 282.0 366 45.9
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 4.2e-73 279.6 478 36.4
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 7.2e-73 278.9 436 39.4
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 7.2e-73 278.9 438 37.9
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 7.2e-73 278.9 441 39.7
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 1.2e-72 278.1 431 38.3
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 1.2e-72 278.1 448 38.8
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 2.1e-72 277.3 427 39.3
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 2.7e-72 276.9 424 41.0
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 3.6e-72 276.6 483 37.7
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 4.7e-72 276.2 369 43.4
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 6.1e-72 275.8 477 37.9
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 8.0e-72 275.4 474 37.8
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 1.0e-71 275.0 464 37.9
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.4e-71 274.6 449 39.4
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 2.3e-71 273.9 419 40.6
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 4.0e-71 273.1 427 38.2
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 5.2e-71 272.7 389 41.4
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 6.7e-71 272.3 427 38.9
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 8.8e-71 271.9 373 44.0
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 1.2e-70 271.6 375 42.7
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 2.6e-70 270.4 442 37.6
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 3.3e-70 270.0 465 37.2
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 3.3e-70 270.0 469 37.7
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 3.3e-70 270.0 362 43.6
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 4.4e-70 269.6 450 38.9
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 5.7e-70 269.2 401 42.4
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 7.5e-70 268.9 433 35.8
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 2.2e-69 267.3 471 40.1
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 2.2e-69 267.3 450 38.2
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 2.8e-69 266.9 480 37.3
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 2.8e-69 266.9 444 37.6
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 2.8e-69 266.9 460 38.7
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 3.7e-69 266.5 388 40.5
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 2.4e-68 263.8 425 36.7
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 5.3e-68 262.7 374 39.3
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.2e-67 261.5 478 37.2
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 2.0e-67 260.8 400 41.0
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 5.9e-67 259.2 374 42.2
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 5.9e-67 259.2 440 38.2
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.0e-66 258.5 409 39.4
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 1.0e-66 258.5 388 40.5
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 1.7e-66 257.7 380 40.3
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 2.9e-66 256.9 374 39.3
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 3.8e-66 256.5 482 38.2
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 5.0e-66 256.1 455 37.4
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 1.5e-65 254.6 360 42.5
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 1.9e-65 254.2 461 36.0
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 2.5e-65 253.8 396 39.9
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 5.5e-65 252.7 381 40.4
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.6e-64 251.1 475 34.7
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 8.0e-64 248.8 382 40.8
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 2.3e-63 247.3 446 36.8
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 4.0e-63 246.5 439 37.4
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 5.2e-63 246.1 425 37.6
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 1.5e-62 244.6 461 37.3
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 1.5e-62 244.6 408 38.5
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.5e-62 244.6 422 38.2
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.5e-62 244.6 426 37.6
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.6e-62 243.8 414 38.4
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 3.4e-62 243.4 460 35.0
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 5.7e-62 242.7 432 36.8
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 9.8e-62 241.9 372 39.0
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 2.2e-61 240.7 435 36.8
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 2.8e-61 240.4 401 39.9
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 1.1e-60 238.4 371 40.4
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 3.1e-60 236.9 433 37.2
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 4.1e-60 236.5 431 37.4
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 5.4e-60 236.1 465 34.2
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 5.4e-60 236.1 412 37.6
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 1.7e-58 231.1 424 35.6
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 7.2e-57 225.7 420 36.0
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 1.6e-56 224.6 427 37.2
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 3.0e-55 220.3 396 40.2
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 3.4e-54 216.9 303 41.9
BraA05t19155Z Brassica rapa HOM05D004448 ORTHO05D005919 1.3e-53 214.9 122 83.6
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 3.1e-52 210.3 412 35.7
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 3.5e-51 206.8 479 33.8
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 2.9e-50 203.8 471 34.0
Carub.0007s1478 Capsella rubella HOM05D004448 ORTHO05D015948 8.6e-50 202.2 479 35.1
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.1e-49 201.8 244 48.4
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 2.5e-49 200.7 332 39.8
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 5.6e-49 199.5 401 34.7
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 4.7e-48 196.4 307 40.1
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 3.0e-47 193.7 253 45.5
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 1.3e-45 188.3 419 32.5
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 1.8e-44 184.5 300 38.7
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.0e-43 181.0 341 36.1
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 1.5e-41 174.9 356 33.7
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.9e-41 174.5 283 40.3
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.6e-40 171.4 343 34.4
BcaNung02444 Brassica carinata HOM05D004448 ORTHO05D015948 8.0e-40 169.1 496 34.5
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 1.8e-39 167.9 175 49.7
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 2.3e-39 167.5 309 34.0
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.2e-37 161.0 301 34.9
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 3.7e-37 160.2 480 30.0
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.7e-37 160.2 331 33.2
BcaC09g50676 Brassica carinata HOM05D004448 ORTHO05D015948 4.6e-35 153.3 468 29.5
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 2.3e-34 151.0 185 45.4
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 2.3e-34 151.0 376 31.9
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 4.3e-33 146.7 145 51.7
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 9.5e-33 145.6 278 36.0
A01p17460 Brassica napus HOM05D004448 ORTHO05D015948 1.2e-32 145.2 449 30.3
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 2.8e-32 144.1 230 42.6
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 8.1e-32 142.5 301 34.2
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 6.8e-31 139.4 143 49.0
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 2.2e-29 134.4 194 42.8
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.7e-27 127.5 367 31.1
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 2.7e-27 127.5 155 45.8
BraA01t01701Z Brassica rapa HOM05D004448 ORTHO05D015948 7.8e-27 125.9 491 27.7
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.3e-26 125.2 438 25.8
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 1.9e-25 121.3 149 43.6
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 3.3e-25 120.6 234 35.0
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 1.6e-24 118.2 323 31.6
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 8.1e-24 115.9 100 57.0
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 3.4e-22 110.5 104 54.8
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 8.4e-21 105.9 135 40.7
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.4e-20 105.1 240 32.9
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 1.5e-17 95.1 209 30.6
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 4.3e-17 93.6 185 34.6
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 9.6e-17 92.4 113 44.2
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 1.8e-15 88.2 246 28.9
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 4.0e-15 87.0 191 33.5
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 2.0e-14 84.7 125 40.8
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.9e-13 80.9 214 29.9
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.9e-13 80.9 214 29.9
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 3.9e-10 70.5 94 40.4
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 1.9e-09 68.2 145 31.7
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.3e-09 67.4 200 29.0
FvH4_1g07231 Fragaria vesca HOM05D004448 ORTHO05D005919 5.3e-07 60.1 133 32.3
Medtr6g092480 Medicago truncatula HOM05D012533 ORTHO05D264910 5.3e-07 60.1 57 47.4
Glyma.01G003300 Glycine max HOM05D004448 ORTHO05D005919 4.5e-06 57.0 127 34.6
Pp3c9_23170 Physcomitrium patens HOM05D004448 ORTHO05D005919 5.8e-06 56.6 175 25.1


User provided reference genes

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