Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 9.3e-78 293.5 152 100.0
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 4.0e-73 278.1 145 99.3
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 3.7e-50 201.8 142 81.0
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 3.7e-34 148.7 124 67.7
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 8.5e-31 137.5 124 62.9
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 1.9e-30 136.3 126 62.7
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 1.9e-30 136.3 126 62.7
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 1.9e-30 136.3 126 62.7
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 2.5e-30 136.0 121 63.6
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 1.6e-29 133.3 126 59.5
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 1.6e-29 133.3 126 59.5
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 8.0e-29 131.0 127 60.6
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 1.0e-28 130.6 124 59.7
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 3.0e-28 129.0 121 60.3
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 1.2e-27 127.1 119 62.2
BraA08t32263Z Brassica rapa HOM05D003909 ORTHO05D004478 3.4e-27 125.6 94 79.8
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 5.7e-27 124.8 119 61.3
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 4.8e-26 121.7 119 58.8
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 6.3e-26 121.3 119 60.5
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 6.3e-26 121.3 119 60.5
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 1.4e-25 120.2 124 58.1
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 1.8e-25 119.8 124 58.1
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 7.0e-25 117.9 127 54.3
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 4.5e-24 115.2 124 56.5
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 7.7e-24 114.4 126 54.8
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 7.7e-24 114.4 126 54.8
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.0e-23 114.0 126 52.4
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 2.2e-23 112.8 133 51.1
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 2.9e-23 112.5 121 52.9
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 5.0e-23 111.7 127 52.0
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 8.5e-23 110.9 112 55.4
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 8.5e-23 110.9 126 51.6
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 1.1e-22 110.5 124 53.2
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 1.1e-22 110.5 112 57.1
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 1.1e-22 110.5 112 55.4
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 1.5e-22 110.2 125 53.6
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 2.5e-22 109.4 129 53.5
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 4.2e-22 108.6 112 54.5
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 4.2e-22 108.6 117 57.3
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 4.2e-22 108.6 127 53.5
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 5.5e-22 108.2 128 50.0
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 9.5e-22 107.5 124 54.8
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 9.5e-22 107.5 119 53.8
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.2e-21 107.1 131 52.7
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 1.6e-21 106.7 123 51.2
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.6e-21 106.7 131 51.1
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 1.6e-21 106.7 127 52.0
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 2.1e-21 106.3 111 54.1
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 2.8e-21 105.9 126 49.2
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 4.7e-21 105.1 132 47.7
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 4.7e-21 105.1 127 51.2
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 8.0e-21 104.4 133 47.4
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 1.0e-20 104.0 142 45.1
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 1.0e-20 104.0 109 56.9
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 1.0e-20 104.0 118 47.5
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 1.4e-20 103.6 101 59.4
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.4e-20 103.6 125 52.0
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 1.4e-20 103.6 131 51.1
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 1.8e-20 103.2 112 58.9
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 1.8e-20 103.2 126 49.2
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 2.3e-20 102.8 108 57.4
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 2.3e-20 102.8 131 49.6
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 2.3e-20 102.8 106 53.8
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 3.0e-20 102.4 127 48.0
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 3.0e-20 102.4 130 46.2
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 3.0e-20 102.4 98 59.2
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 4.0e-20 102.1 112 58.0
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 4.0e-20 102.1 118 51.7
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 5.2e-20 101.7 118 55.9
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 5.2e-20 101.7 118 51.7
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 8.8e-20 100.9 108 56.5
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 8.8e-20 100.9 122 50.0
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 8.8e-20 100.9 125 52.0
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 8.8e-20 100.9 127 49.6
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 8.8e-20 100.9 131 45.0
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 1.2e-19 100.5 114 51.8
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.5e-19 100.1 121 50.4
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 1.5e-19 100.1 127 51.2
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 1.5e-19 100.1 142 47.9
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 1.5e-19 100.1 127 48.8
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.5e-19 100.1 133 46.6
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 2.0e-19 99.8 131 44.3
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 2.0e-19 99.8 131 45.0
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 2.6e-19 99.4 130 49.2
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 4.4e-19 98.6 108 53.7
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 4.4e-19 98.6 130 46.9
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 4.4e-19 98.6 121 48.8
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 4.4e-19 98.6 131 47.3
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 5.7e-19 98.2 134 46.3
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 7.5e-19 97.8 133 45.9
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 7.5e-19 97.8 99 56.6
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 9.8e-19 97.4 114 50.0
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 9.8e-19 97.4 123 48.0
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 1.3e-18 97.1 123 48.0
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 2.2e-18 96.3 120 49.2
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 2.2e-18 96.3 108 56.5
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 3.7e-18 95.5 117 53.0
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 3.7e-18 95.5 109 54.1
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 6.3e-18 94.7 115 50.4
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 8.3e-18 94.4 97 58.8
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 1.1e-17 94.0 127 47.2
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 1.1e-17 94.0 107 52.3
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 1.1e-17 94.0 166 41.0
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 1.4e-17 93.6 127 48.8
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 1.8e-17 93.2 112 50.0
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 1.8e-17 93.2 112 50.0
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 1.8e-17 93.2 138 44.2
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 2.4e-17 92.8 112 50.0
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 3.1e-17 92.4 128 46.1
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 4.1e-17 92.0 100 56.0
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 4.1e-17 92.0 131 45.8
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 7.0e-17 91.3 126 46.8
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 1.2e-16 90.5 109 56.9
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 1.6e-16 90.1 145 42.8
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 1.6e-16 90.1 122 46.7
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 1.6e-16 90.1 125 44.8
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 2.7e-16 89.4 126 46.0
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 3.5e-16 89.0 77 63.6
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 3.5e-16 89.0 126 46.0
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 3.5e-16 89.0 107 55.1
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 5.9e-16 88.2 107 50.5
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 5.9e-16 88.2 100 52.0
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 5.9e-16 88.2 108 53.7
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 7.8e-16 87.8 130 45.4
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 1.0e-15 87.4 107 49.5
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 1.3e-15 87.0 123 48.8
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 1.7e-15 86.7 109 55.0
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 2.3e-15 86.3 102 52.9
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 5.0e-15 85.1 125 44.0
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 6.6e-15 84.7 134 45.5
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 6.6e-15 84.7 123 48.0
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 1.1e-14 84.0 112 50.0
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 2.5e-14 82.8 114 45.6
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 3.3e-14 82.4 102 52.9
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 3.3e-14 82.4 114 48.2
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 4.3e-14 82.0 130 43.8
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 5.6e-14 81.6 132 45.5
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 9.5e-14 80.9 129 44.2
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 1.2e-13 80.5 107 48.6
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 1.2e-13 80.5 107 48.6
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 1.2e-13 80.5 107 48.6
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 2.1e-13 79.7 127 41.7
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 3.6e-13 79.0 119 47.9
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 6.1e-13 78.2 120 45.0
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 6.1e-13 78.2 114 44.7
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 3.0e-12 75.9 67 55.2
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 4.0e-12 75.5 121 43.8
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 4.0e-12 75.5 105 45.7
A08p02160 Brassica napus HOM05D003909 ORTHO05D004478 1.2e-11 73.9 57 68.4
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 1.2e-11 73.9 110 46.4
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.5e-11 73.6 124 41.9
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 3.7e-10 68.9 139 40.3
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 1.4e-09 67.0 108 44.4
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 2.4e-09 66.2 118 41.5
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 1.2e-08 63.9 62 51.6
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 2.0e-08 63.2 122 40.2
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 3.0e-07 59.3 102 39.2
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 3.3e-06 55.8 45 57.8
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 7.3e-06 54.7 105 40.0


User provided reference genes

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