Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 0.0e+00 1410.2 736 100.0
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 0.0e+00 1398.6 736 99.2
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 0.0e+00 1394.0 736 97.0
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 0.0e+00 1377.5 739 93.5
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 0.0e+00 1365.9 741 92.7
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 0.0e+00 1323.5 743 90.7
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 0.0e+00 1238.8 760 84.3
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 0.0e+00 1226.8 766 82.2
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 0.0e+00 1226.8 766 82.2
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 0.0e+00 1221.1 774 81.4
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 0.0e+00 1208.7 709 86.5
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 0.0e+00 1188.3 617 91.7
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 0.0e+00 1177.5 763 81.8
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 0.0e+00 1172.9 760 79.1
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 0.0e+00 1164.8 755 81.3
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 0.0e+00 1152.1 758 78.1
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 0.0e+00 1120.9 760 75.5
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 0.0e+00 1109.7 735 77.3
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 0.0e+00 1078.2 627 80.9
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 1.1e-306 1056.2 634 79.8
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 2.6e-290 1001.9 632 74.4
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 3.4e-290 1001.5 632 74.2
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 9.8e-290 1000.0 632 74.1
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 4.1e-288 994.6 632 73.4
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 3.5e-287 991.5 626 73.6
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 5.9e-287 990.7 629 73.8
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 1.0e-286 989.9 741 65.3
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 1.3e-286 989.6 632 72.9
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 3.8e-286 988.0 626 73.8
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 1.8e-283 979.2 619 73.2
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 2.3e-283 978.8 627 72.7
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 3.0e-283 978.4 624 73.1
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 1.2e-282 976.5 623 73.0
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 1.7e-281 972.6 639 71.4
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 2.2e-281 972.2 628 72.8
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 4.9e-281 971.1 633 71.9
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 6.3e-281 970.7 625 72.8
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 1.1e-280 969.9 632 72.0
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 1.1e-280 969.9 632 72.0
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 1.4e-280 969.5 628 72.1
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 2.4e-280 968.8 625 73.3
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 9.1e-280 966.8 630 73.3
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 1.3e-278 963.0 621 71.8
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 1.7e-278 962.6 628 71.5
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 2.3e-278 962.2 625 72.0
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 2.3e-278 962.2 625 72.3
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 2.3e-278 962.2 619 72.7
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 1.1e-277 959.9 637 70.5
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 3.3e-277 958.4 652 69.2
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.2e-276 956.4 619 76.4
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 8.0e-276 953.7 625 71.4
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 1.0e-275 953.4 626 71.7
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 8.9e-275 950.3 637 70.5
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 1.5e-274 949.5 625 70.6
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 2.0e-274 949.1 625 71.0
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 2.6e-274 948.7 626 71.2
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 5.7e-274 947.6 629 70.9
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 1.3e-273 946.4 744 62.4
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 2.2e-273 945.7 617 71.8
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 3.2e-272 941.8 621 71.3
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 7.8e-271 937.2 624 70.0
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 2.3e-270 935.6 617 71.3
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 1.9e-269 932.6 645 69.5
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 4.3e-269 931.4 643 69.8
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 6.2e-268 927.5 658 67.0
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 8.0e-268 927.2 631 67.8
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 1.8e-267 926.0 626 71.2
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 3.1e-267 925.2 625 69.4
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 4.0e-267 924.9 607 72.3
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 5.2e-267 924.5 626 71.2
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 1.2e-266 923.3 620 70.0
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 1.5e-266 922.9 631 70.7
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 1.5e-266 922.9 635 69.6
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 4.4e-266 921.4 674 65.6
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 6.4e-265 917.5 665 65.3
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 1.3e-262 909.8 626 69.2
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.9e-261 906.0 552 79.9
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 1.5e-258 896.3 617 69.0
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 1.3e-257 893.3 662 65.3
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 1.4e-256 889.8 626 68.2
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 3.2e-256 888.6 628 65.4
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 4.1e-256 888.3 629 67.7
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 4.1e-256 888.3 629 67.7
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 1.2e-255 886.7 657 65.0
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 3.3e-253 878.6 622 67.7
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 3.3e-253 878.6 635 66.6
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 2.0e-250 869.4 625 66.6
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 4.1e-248 861.7 643 63.8
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 4.1e-248 861.7 619 65.8
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 3.5e-247 858.6 619 65.3
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 1.7e-246 856.3 566 70.5
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 3.9e-246 855.1 601 67.6
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 5.6e-245 851.3 572 70.1
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 1.4e-243 846.7 627 64.6
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 6.4e-241 837.8 541 71.5
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 3.0e-238 828.9 547 71.3
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 7.3e-237 824.3 630 64.1
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 3.6e-236 822.0 713 58.5
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 8.1e-236 820.8 629 64.9
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 8.1e-236 820.8 682 60.9
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 2.6e-234 815.8 596 66.4
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 2.6e-234 815.8 616 64.4
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 2.9e-233 812.4 627 60.0
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.3e-228 797.0 633 62.1
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 4.0e-227 792.0 650 59.1
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 1.2e-226 790.4 630 63.3
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 3.5e-223 778.9 628 59.9
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 1.3e-222 776.9 630 62.2
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.0e-218 763.1 633 60.0
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 5.5e-216 755.0 620 58.9
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 5.0e-209 731.9 651 55.1
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 7.9e-207 724.5 672 55.8
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 8.2e-204 714.5 633 57.3
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 3.1e-195 686.0 585 59.1
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 2.0e-194 683.3 541 61.0
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 2.2e-193 679.9 624 56.9
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 2.5e-192 676.4 429 73.9
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 1.8e-190 670.2 437 71.9
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 5.1e-190 668.7 432 72.2
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.9e-184 650.2 532 60.2
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 8.8e-182 641.3 633 52.8
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 1.7e-180 637.1 384 78.1
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.6e-178 630.6 631 52.6
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 2.9e-177 626.3 435 69.0
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.1e-171 607.8 430 67.0
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 4.1e-171 605.9 432 66.2
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 1.2e-170 604.4 430 65.6
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 1.7e-169 600.5 658 47.7
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 5.6e-160 568.9 422 62.6
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 5.6e-160 568.9 422 62.1
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 4.4e-157 559.3 722 43.1
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 2.8e-143 513.5 318 78.0
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 9.5e-136 488.4 636 41.8
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 2.8e-135 486.9 429 56.2
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.1e-131 474.9 442 54.8
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 1.9e-131 474.2 661 40.5
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 1.1e-126 458.4 616 39.4
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 7.6e-109 399.1 435 49.9
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 5.5e-91 339.7 196 80.6
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 2.3e-89 334.3 224 70.1
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 3.9e-81 307.0 194 74.2
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 8.2e-79 299.3 190 73.7
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 5.0e-76 290.0 185 72.4
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 2.6e-72 277.7 171 75.4
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 3.1e-70 270.8 188 69.1
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 5.3e-70 270.0 188 68.1
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 2.6e-69 267.7 157 77.7
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 7.5e-64 249.6 187 64.2
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 2.0e-61 241.5 151 76.2
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 8.5e-60 236.1 136 76.5
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.9e-59 235.0 166 65.7
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 1.2e-58 232.3 142 74.6
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 4.4e-56 223.8 113 93.8
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 2.8e-50 204.5 113 86.7
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.3e-44 185.7 103 80.6
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 1.6e-37 162.2 106 69.8
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 7.8e-37 159.8 79 92.4
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 2.5e-35 154.8 104 70.2
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 3.3e-35 154.5 83 83.1
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 4.0e-25 120.9 82 70.7
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 6.8e-25 120.2 70 77.1
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 9.9e-24 116.3 85 64.7
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 8.3e-23 113.2 149 42.3
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 1.2e-18 99.4 69 69.6
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 4.6e-13 80.9 50 70.0
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 9.0e-09 66.6 44 70.5
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 3.4e-08 64.7 50 62.0


User provided reference genes

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