Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 1.6e-135 486.1 246 100.0
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 1.9e-133 479.2 246 98.8
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 5.3e-131 471.1 247 98.0
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 3.8e-129 464.9 245 97.1
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 6.5e-121 437.6 250 90.0
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 6.5e-121 437.6 249 89.6
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.2e-119 433.3 249 88.8
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 7.9e-119 430.6 250 88.8
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 2.3e-118 429.1 250 88.4
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.3e-118 429.1 250 88.4
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 1.9e-117 426.0 249 86.3
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 1.1e-115 420.2 256 84.8
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 1.1e-115 420.2 256 84.8
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 4.2e-112 408.3 255 83.9
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 6.7e-110 401.0 246 86.6
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 3.0e-102 375.6 238 81.9
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 5.3e-99 364.8 213 85.9
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 6.9e-99 364.4 254 76.4
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.2e-98 363.6 252 75.8
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 4.2e-96 355.1 250 73.2
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 3.3e-93 345.5 256 71.1
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 2.8e-92 342.4 254 70.5
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 5.3e-91 338.2 255 69.4
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 7.7e-90 334.3 252 69.0
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 8.5e-89 330.9 232 73.3
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 1.1e-88 330.5 226 73.0
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 2.5e-88 329.3 254 69.7
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 4.2e-88 328.6 260 66.5
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.6e-87 326.6 250 68.4
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.1e-87 326.2 223 74.0
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.1e-87 326.2 223 74.0
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 2.7e-87 325.9 244 70.5
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 3.6e-87 325.5 267 64.8
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 4.7e-87 325.1 252 68.3
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 8.0e-87 324.3 260 68.1
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 8.0e-87 324.3 261 65.5
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 3.0e-86 322.4 256 67.6
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 5.2e-86 321.6 231 71.0
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 8.8e-86 320.9 258 66.7
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 8.8e-86 320.9 223 73.5
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.1e-85 320.5 262 65.6
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 1.1e-85 320.5 260 66.2
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 1.1e-85 320.5 183 84.7
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 1.1e-85 320.5 233 70.8
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 1.1e-85 320.5 257 66.5
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 1.5e-85 320.1 191 80.6
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 1.5e-85 320.1 204 77.0
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 2.6e-85 319.3 252 68.7
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 4.4e-85 318.5 257 68.1
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 5.7e-85 318.2 263 66.2
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 7.5e-85 317.8 260 66.2
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 9.7e-85 317.4 249 66.7
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 1.7e-84 316.6 251 68.9
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 1.7e-84 316.6 249 68.3
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 2.2e-84 316.2 183 82.5
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.2e-84 316.2 252 68.3
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 2.2e-84 316.2 257 66.1
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 2.2e-84 316.2 250 66.8
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 2.2e-84 316.2 240 70.0
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 2.2e-84 316.2 256 64.8
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 2.2e-84 316.2 268 65.3
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 3.7e-84 315.5 256 66.0
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.8e-84 315.1 258 66.7
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 6.3e-84 314.7 255 66.7
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 6.3e-84 314.7 241 70.1
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 6.3e-84 314.7 246 69.5
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 6.3e-84 314.7 255 65.1
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 8.2e-84 314.3 239 68.6
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 8.2e-84 314.3 180 82.8
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 1.1e-83 313.9 260 66.9
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 1.8e-83 313.2 241 68.5
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 3.1e-83 312.4 183 83.1
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 4.1e-83 312.0 258 63.2
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 5.3e-83 311.6 229 70.3
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 7.0e-83 311.2 260 65.8
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 9.1e-83 310.8 228 71.9
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 9.1e-83 310.8 255 64.7
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 9.1e-83 310.8 255 65.9
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 9.1e-83 310.8 253 66.4
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 9.1e-83 310.8 253 66.0
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 1.2e-82 310.5 217 70.5
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 1.6e-82 310.1 249 65.5
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 1.6e-82 310.1 213 72.8
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.0e-82 309.7 250 67.2
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 2.7e-82 309.3 252 65.9
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 2.7e-82 309.3 257 65.8
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.5e-82 308.9 256 66.0
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 4.5e-82 308.5 246 68.3
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 5.9e-82 308.1 180 81.1
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 5.9e-82 308.1 248 66.5
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 5.9e-82 308.1 242 67.4
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.0e-81 307.4 261 62.5
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 1.0e-81 307.4 238 67.6
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 1.3e-81 307.0 220 71.8
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 1.7e-81 306.6 257 63.4
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 2.9e-81 305.8 259 63.7
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 3.8e-81 305.4 259 62.2
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 5.0e-81 305.1 251 66.9
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 5.0e-81 305.1 258 63.2
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 5.0e-81 305.1 230 70.0
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 6.5e-81 304.7 252 65.5
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 6.5e-81 304.7 232 70.7
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 8.5e-81 304.3 251 64.1
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 1.5e-80 303.5 262 62.2
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.9e-80 303.1 230 69.1
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 1.9e-80 303.1 206 71.4
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 2.5e-80 302.8 254 63.0
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 3.2e-80 302.4 234 67.1
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 4.2e-80 302.0 178 82.6
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 7.2e-80 301.2 204 73.5
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 7.2e-80 301.2 262 63.0
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 7.2e-80 301.2 258 63.6
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 1.2e-79 300.4 262 62.6
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 1.2e-79 300.4 262 62.6
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.8e-78 296.6 258 64.3
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 4.4e-77 292.0 253 61.7
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 7.5e-77 291.2 253 61.3
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 1.7e-76 290.0 244 63.1
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 2.7e-74 282.7 232 66.8
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 7.7e-74 281.2 219 65.8
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 1.0e-73 280.8 188 74.5
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 8.5e-73 277.7 174 78.7
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 1.1e-72 277.3 188 71.8
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 4.2e-72 275.4 203 67.0
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 4.2e-72 275.4 186 75.3
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 7.2e-72 274.6 256 60.2
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 2.7e-71 272.7 184 74.5
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 3.6e-71 272.3 201 68.2
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 3.0e-70 269.2 183 69.9
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 8.8e-70 267.7 205 65.9
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 4.4e-69 265.4 179 71.5
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 5.7e-69 265.0 183 68.3
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 5.4e-67 258.5 193 66.3
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.0e-62 242.7 207 61.4
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 8.9e-62 241.1 143 79.7
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.7e-60 236.9 246 56.5
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 7.0e-59 231.5 152 71.7
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 6.6e-57 224.9 226 56.6
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 2.3e-54 216.5 170 64.1
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 2.0e-53 213.4 134 76.1
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.3e-52 210.7 204 57.8
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 2.4e-51 206.5 175 62.3
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 9.2e-51 204.5 118 80.5
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.3e-48 196.1 123 82.1
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 2.1e-47 193.4 222 48.2
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 2.8e-47 193.0 176 61.4
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 8.9e-46 188.0 249 47.8
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 4.1e-43 179.1 208 48.6
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 2.1e-42 176.8 249 47.0
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 3.5e-42 176.0 259 45.2
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 3.5e-42 176.0 172 58.1
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 3.5e-42 176.0 127 71.7
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 4.6e-42 175.6 161 61.5
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 1.1e-40 171.0 98 86.7
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 1.7e-36 157.1 81 95.1
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 3.8e-36 156.0 79 96.2
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 4.0e-30 136.0 103 63.1
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 1.4e-27 127.5 78 76.9
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 7.3e-24 115.2 86 65.1
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 9.6e-24 114.8 114 56.1
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 2.6e-21 106.7 123 49.6
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 4.9e-20 102.4 88 59.1
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 5.8e-13 79.0 52 73.1
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 7.6e-13 78.6 207 31.4
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 1.4e-11 74.3 133 39.8
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 9.3e-11 71.6 71 47.9
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.6e-10 70.9 197 33.0
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 2.7e-10 70.1 123 35.8
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 1.0e-09 68.2 155 31.0
BcaC01g01539 Brassica carinata HOM05D004152 ORTHO05D004878 3.0e-09 66.6 62 58.1
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 5.1e-09 65.9 55 58.2
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 1.1e-08 64.7 49 65.3
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 4.3e-08 62.8 44 61.4
Cfa023744 Carpinus fangiana HOM05D003112 ORTHO05D003660 3.1e-06 56.6 102 34.3
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 4.0e-06 56.2 101 36.6


User provided reference genes

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