Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1722.6 859 100.0
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1722.6 859 100.0
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1722.6 859 100.0
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1702.6 859 99.0
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1702.6 859 99.0
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1687.5 859 97.6
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1679.1 859 97.2
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1642.1 859 94.5
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1622.4 859 93.6
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1620.5 859 93.8
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1612.8 859 93.2
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1550.8 862 88.9
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1528.1 863 87.3
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1371.7 864 78.8
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1368.6 866 78.9
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1367.4 866 78.9
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1360.1 866 78.6
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1347.8 883 76.4
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1343.9 865 76.6
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1341.3 865 77.7
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1337.8 855 78.0
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1336.2 864 77.0
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1333.2 865 77.1
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1328.9 865 77.7
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1327.0 856 77.2
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1325.8 866 76.8
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1324.3 866 75.9
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1324.3 865 76.5
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1324.3 859 76.4
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1322.0 866 75.9
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1321.6 866 75.9
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1320.1 799 85.1
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1314.7 913 73.2
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1313.9 865 77.0
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1313.9 866 75.3
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1307.4 867 75.5
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1305.8 867 75.1
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1304.7 865 75.8
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1303.9 855 75.9
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1303.9 865 75.3
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1302.7 867 75.3
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1302.3 865 75.1
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1302.3 865 75.1
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1302.0 869 76.1
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1300.0 866 74.6
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1298.9 863 74.5
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1298.1 865 75.0
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1298.1 863 75.2
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1297.7 857 75.8
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1296.6 863 74.9
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1293.9 863 75.1
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1291.6 863 74.6
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1291.6 867 74.9
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1290.4 865 74.7
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1290.0 693 95.2
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1290.0 868 75.1
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1288.9 867 74.7
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1285.4 872 73.1
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1280.0 872 72.9
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1276.5 931 69.8
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1275.4 865 72.8
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1275.4 925 70.6
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1274.2 872 72.7
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1273.5 865 73.5
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1270.4 859 73.2
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1269.2 872 72.6
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1267.7 859 73.1
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1266.5 867 74.0
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1266.5 865 72.6
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1260.4 888 71.2
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1260.0 944 69.4
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1258.0 855 73.5
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1256.9 863 73.0
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1253.0 865 72.7
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1251.1 868 71.8
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1251.1 854 71.5
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1249.2 931 68.1
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1248.4 931 68.1
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1245.3 880 72.3
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1245.0 865 72.0
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1241.1 858 71.7
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1237.6 858 71.7
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1225.3 895 70.3
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1223.4 863 70.1
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1223.0 960 65.5
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1221.8 783 78.0
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1221.5 807 73.6
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1182.2 878 66.7
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1181.4 852 68.5
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1174.8 744 77.7
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1159.1 862 67.2
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1092.4 682 84.0
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 5.6e-305 1050.8 856 63.2
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 1.7e-301 1039.3 854 63.8
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 1.2e-299 1033.1 864 59.3
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 2.3e-298 1028.9 852 60.2
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 3.1e-295 1018.5 867 63.2
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 1.1e-289 1000.0 898 58.9
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 1.4e-284 983.0 1157 50.1
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 3.0e-282 975.3 853 56.5
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 3.3e-265 918.7 644 71.3
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.1e-259 899.4 874 59.3
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 1.2e-249 867.1 620 70.0
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 5.5e-244 848.2 748 61.9
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.4e-201 706.1 494 71.7
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 6.0e-190 668.7 434 77.4
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 2.4e-186 656.8 470 72.3
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 8.7e-181 638.3 623 57.8
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 1.9e-175 620.5 427 71.4
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 6.9e-162 575.5 866 38.8
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 1.0e-157 561.6 873 38.7
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.5e-153 547.7 370 76.2
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 4.2e-151 539.7 342 79.2
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 1.8e-146 524.2 378 67.5
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 1.3e-144 518.1 371 75.2
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 2.5e-143 513.8 615 51.4
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 1.6e-137 494.6 848 35.7
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 1.6e-121 441.4 453 52.5
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 4.0e-117 426.8 990 30.9
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 2.0e-108 397.9 349 54.2
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 5.8e-92 343.2 331 52.3
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 9.2e-90 335.9 282 62.4
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 7.8e-89 332.8 158 100.0
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 2.1e-78 298.1 218 69.3
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 6.2e-78 296.6 260 58.5
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 2.7e-73 281.2 165 81.8
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 2.0e-68 265.0 319 45.8
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 1.6e-41 175.6 97 83.5
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 5.0e-35 154.1 101 70.3
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 6.5e-35 153.7 97 73.2
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 2.7e-33 148.3 94 76.6
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 2.3e-32 145.2 103 69.9
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 3.3e-31 141.4 94 72.3
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 4.8e-30 137.5 85 76.5
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 6.3e-30 137.1 167 49.7
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 9.1e-29 133.3 111 64.0
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 9.1e-29 133.3 91 70.3
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 3.5e-28 131.3 87 71.3
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 5.9e-28 130.6 185 48.1
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 1.4e-24 119.4 113 55.8
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.4e-24 119.4 125 56.0
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 1.4e-24 119.4 67 80.6
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 3.0e-24 118.2 96 64.6
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 4.0e-24 117.9 102 61.8
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 1.5e-23 115.9 103 61.2
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 3.1e-21 108.2 96 59.4
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 4.1e-21 107.8 68 69.1
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 1.2e-20 106.3 64 71.9
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 5.0e-19 100.9 61 68.9
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.5e-18 99.4 138 42.8
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 6.1e-17 94.0 113 46.0
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 8.0e-17 93.6 87 60.9
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 8.0e-17 93.6 87 60.9
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 1.4e-16 92.8 81 61.7
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 1.7e-14 85.9 52 73.1
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 1.7e-14 85.9 52 73.1
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 1.1e-10 73.2 37 91.9
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 8.8e-08 63.5 85 48.2
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 1.5e-07 62.8 41 73.2
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 2.0e-07 62.4 78 46.2
MBI10_g02226_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 9.8e-07 60.1 34 82.4


User provided reference genes

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