Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 0.0e+00 1479.2 826 100.0
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 0.0e+00 1384.0 834 93.6
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 0.0e+00 1297.0 805 91.7
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 0.0e+00 1251.5 849 86.0
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 0.0e+00 1242.6 852 85.6
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 2.6e-251 872.5 893 60.5
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 3.8e-250 868.6 852 60.4
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 4.7e-240 835.1 833 59.7
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 3.0e-223 779.2 830 57.1
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 1.2e-222 777.3 852 57.4
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 1.1e-212 744.2 848 55.2
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 4.0e-199 699.1 820 53.9
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 2.4e-172 610.1 833 47.7
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 1.1e-153 548.1 855 45.8
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 4.9e-149 532.7 861 44.3
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 3.3e-145 520.0 835 44.1
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 2.5e-132 477.2 831 39.6
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 2.5e-132 477.2 831 40.6
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 3.0e-130 470.3 827 39.2
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 3.9e-130 469.9 836 39.7
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 3.3e-129 466.8 823 39.0
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 7.4e-129 465.7 851 38.8
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 2.2e-128 464.2 834 39.2
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 2.8e-128 463.8 830 39.2
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 4.8e-128 463.0 836 38.3
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 6.3e-128 462.6 821 38.4
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 1.8e-127 461.1 830 39.3
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 7.0e-127 459.1 830 38.8
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 7.0e-127 459.1 818 38.4
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 3.5e-126 456.8 844 37.1
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 4.5e-126 456.4 823 37.8
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 1.0e-125 455.3 827 38.3
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 2.2e-125 454.1 826 39.1
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 2.5e-124 450.7 821 38.5
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 3.2e-124 450.3 820 38.0
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 2.7e-123 447.2 826 38.1
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 3.6e-123 446.8 826 38.4
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 3.6e-123 446.8 822 37.6
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 2.3e-122 444.1 828 36.5
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 6.7e-122 442.6 821 38.1
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 3.3e-121 440.3 802 38.0
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 7.4e-121 439.1 847 37.8
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.8e-120 437.2 834 36.6
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 1.8e-119 434.5 835 36.6
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 4.1e-119 433.3 826 38.7
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 9.1e-119 432.2 828 37.1
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 9.1e-119 432.2 821 36.5
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 5.9e-118 429.5 831 37.9
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 3.8e-117 426.8 822 37.5
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 5.0e-117 426.4 819 35.2
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 6.5e-117 426.0 821 37.6
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 1.9e-116 424.5 864 35.5
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 1.9e-116 424.5 832 36.9
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 2.5e-116 424.1 830 35.1
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 3.2e-116 423.7 837 37.4
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 4.2e-116 423.3 828 36.6
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 5.5e-116 422.9 824 36.3
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 5.5e-116 422.9 823 36.1
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 1.2e-115 421.8 810 36.4
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 4.7e-115 419.9 821 36.9
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 8.0e-115 419.1 823 35.7
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 8.0e-115 419.1 819 35.7
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 1.5e-113 414.8 824 38.8
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 2.6e-113 414.1 829 36.3
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 1.7e-112 411.4 812 38.3
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 4.8e-112 409.8 836 35.4
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 5.3e-111 406.4 820 36.1
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 9.1e-111 405.6 822 36.1
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 5.0e-109 399.8 830 34.9
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 1.5e-108 398.3 821 35.2
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 4.2e-108 396.7 781 37.1
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 9.4e-108 395.6 827 34.2
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 1.4e-106 391.7 806 34.4
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 1.8e-106 391.3 821 35.0
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 3.0e-106 390.6 887 33.7
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 6.8e-106 389.4 875 34.9
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 1.5e-105 388.3 822 34.7
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 1.5e-105 388.3 820 34.5
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 4.1e-103 380.2 826 35.2
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 2.9e-101 374.0 825 34.4
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 8.0e-99 365.9 819 33.2
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 1.4e-98 365.2 824 34.6
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 1.8e-98 364.8 828 32.6
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 3.4e-97 360.5 824 32.6
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.7e-96 358.2 824 32.6
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 2.2e-96 357.8 816 34.9
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 3.7e-96 357.1 825 33.8
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 2.0e-94 351.3 826 31.5
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 3.9e-93 347.1 832 33.8
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 5.0e-93 346.7 890 32.4
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 6.6e-93 346.3 822 32.1
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 8.6e-93 345.9 832 33.7
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 1.9e-92 344.7 840 32.6
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 5.6e-92 343.2 783 33.6
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 4.9e-88 330.1 738 34.4
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 1.4e-87 328.6 799 32.8
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 1.6e-86 325.1 328 53.7
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 1.7e-85 321.6 810 32.6
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 4.3e-84 317.0 793 32.3
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 1.2e-83 315.5 764 33.1
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 4.7e-83 313.5 788 31.6
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 1.1e-82 312.4 807 31.6
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 3.4e-81 307.4 810 31.5
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 3.0e-69 267.7 815 30.4
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 8.9e-66 256.1 832 27.9
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 2.9e-64 251.1 726 30.6
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 1.1e-63 249.2 669 31.5
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 1.7e-61 241.9 172 73.3
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 1.7e-61 241.9 172 73.3
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 8.7e-61 239.6 353 42.5
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 5.1e-53 213.8 836 25.8
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 9.0e-50 203.0 231 49.4
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 2.1e-46 191.8 920 24.9
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.7e-46 191.4 268 39.6
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 2.3e-45 188.3 309 38.5
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 5.6e-44 183.7 303 38.0
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 3.1e-42 177.9 200 47.0
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 2.1e-38 165.2 764 24.6
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 4.8e-35 154.1 330 33.3
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 1.9e-31 142.1 204 39.2
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 3.5e-30 137.9 419 27.2
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 8.2e-27 126.7 174 43.1
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 2.3e-21 108.6 126 46.8
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 2.8e-19 101.7 326 31.9
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 2.0e-17 95.5 109 44.0
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.3e-16 92.8 82 52.4
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 1.3e-16 92.8 100 47.0
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 3.2e-15 88.2 230 34.8
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 3.2e-15 88.2 89 49.4
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 2.7e-14 85.1 112 43.8
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.4e-10 72.0 103 42.7
BolC2t11589H Brassica oleracea HOM05D001350 ORTHO05D001091 3.1e-10 71.6 101 49.5


User provided reference genes

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