Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p43710 Brassica napus HOM05D001670 ORTHO05D002980 1.6e-28 128.6 60 100.0
C05p00130 Brassica napus HOM05D001670 ORTHO05D002980 3.4e-23 110.9 53 96.2
BcaB03g13629 Brassica carinata HOM05D001670 ORTHO05D002980 4.4e-23 110.5 52 98.1
BolC5t28803H Brassica oleracea HOM05D001670 ORTHO05D002980 2.9e-22 107.8 54 96.3
A07p21180 Brassica napus HOM05D001670 ORTHO05D002980 1.1e-21 105.9 52 92.3
A10p00140 Brassica napus HOM05D001670 ORTHO05D002980 1.1e-21 105.9 51 96.1
Sp1g00220 Schrenkiella parvula HOM05D001670 ORTHO05D002980 2.4e-21 104.8 52 90.4
Thhalv10006521m.g Eutrema salsugineum HOM05D001670 ORTHO05D002980 3.2e-21 104.4 52 90.4
BcaB02g07859 Brassica carinata HOM05D001670 ORTHO05D002980 9.2e-21 102.8 53 86.8
BcaC08g44594 Brassica carinata HOM05D001670 ORTHO05D002980 9.2e-21 102.8 52 90.4
C06p20660 Brassica napus HOM05D001670 ORTHO05D002980 9.2e-21 102.8 52 90.4
AL1G10200 Arabidopsis lyrata HOM05D001670 ORTHO05D002980 2.0e-20 101.7 52 86.5
BraA07t29805Z Brassica rapa HOM05D001670 ORTHO05D002980 2.7e-20 101.3 53 90.6
BraA09t42277Z Brassica rapa HOM05D001670 ORTHO05D002980 2.7e-20 101.3 52 88.5
BraA10t42293Z Brassica rapa HOM05D001670 ORTHO05D002980 2.7e-20 101.3 52 94.2
BcaC07g42342 Brassica carinata HOM05D001670 ORTHO05D002980 1.3e-19 99.0 52 84.6
BcaNung05012 Brassica carinata HOM05D001670 ORTHO05D002980 1.3e-19 99.0 52 86.5
A09p69240 Brassica napus HOM05D001670 ORTHO05D002980 1.3e-19 99.0 52 86.5
C08p54060 Brassica napus HOM05D001670 ORTHO05D002980 1.3e-19 99.0 52 86.5
BolC8t52916H Brassica oleracea HOM05D001670 ORTHO05D002980 1.3e-19 99.0 52 86.5
BolC6t37249H Brassica oleracea HOM05D001670 ORTHO05D002980 2.3e-19 98.2 53 88.7
CARHR000250 Cardamine hirsuta HOM05D001670 ORTHO05D002980 5.0e-19 97.1 52 86.5
Carub.0001s0015 Capsella rubella HOM05D001670 ORTHO05D002980 1.5e-18 95.5 52 80.8
AT1G02080 Arabidopsis thaliana HOM05D001670 ORTHO05D002980 4.3e-18 94.0 53 81.1
Aa31LG1G11410 Aethionema arabicum HOM05D001670 ORTHO05D002980 7.3e-18 93.2 52 78.8
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 4.4e-15 84.0 52 65.4
Haze_02723 Corylus avellana HOM05D001670 ORTHO05D002980 5.8e-15 83.6 52 63.5
Potri.014G058800 Populus trichocarpa HOM05D001670 ORTHO05D002980 5.8e-15 83.6 52 69.2
Cpa.g.sc914.1 Carica papaya HOM05D001670 ORTHO05D002980 7.5e-15 83.2 52 65.4
Cfa011137 Carpinus fangiana HOM05D001670 ORTHO05D002980 7.5e-15 83.2 52 61.5
Duzib268G0141 Durio zibethinus HOM05D001670 ORTHO05D002980 7.5e-15 83.2 52 65.4
CiPaw.13G031300 Carya illinoinensis HOM05D001670 ORTHO05D002980 9.8e-15 82.8 52 61.5
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 9.8e-15 82.8 52 63.5
CiPaw.14G024400 Carya illinoinensis HOM05D001670 ORTHO05D002980 1.3e-14 82.4 52 63.5
Prupe.2G135900 Prunus persica HOM05D001670 ORTHO05D002980 1.3e-14 82.4 52 61.5
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 1.3e-14 82.4 52 63.5
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 1.7e-14 82.0 52 63.5
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 1.7e-14 82.0 52 63.5
Potri.002G143000 Populus trichocarpa HOM05D001670 ORTHO05D002980 1.7e-14 82.0 52 63.5
THA.LOC104801485 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 1.7e-14 82.0 52 69.2
Aqoxy6G02523 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 2.2e-14 81.6 52 63.5
C09p00060 Brassica napus HOM05D001670 ORTHO05D002980 2.2e-14 81.6 52 69.2
BraA09t35680Z Brassica rapa HOM05D001670 ORTHO05D002980 2.2e-14 81.6 52 69.2
MD07G1112500 Malus domestica HOM05D001670 ORTHO05D002980 2.2e-14 81.6 52 61.5
BcaC04g24208 Brassica carinata HOM05D001670 ORTHO05D002980 2.9e-14 81.3 52 67.3
BolC9t52941H Brassica oleracea HOM05D001670 ORTHO05D002980 2.9e-14 81.3 52 67.3
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 3.7e-14 80.9 52 59.6
MD02G1214300 Malus domestica HOM05D001670 ORTHO05D002980 3.7e-14 80.9 52 61.5
Aqoxy7G00778 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 4.9e-14 80.5 52 61.5
ClCG05G000260 Citrullus lanatus HOM05D001670 ORTHO05D002980 4.9e-14 80.5 52 61.5
Dinv44111 Davidia involucrata HOM05D001670 ORTHO05D002980 4.9e-14 80.5 52 61.5
Lalb_Chr13g0290371 Lupinus albus HOM05D001670 ORTHO05D002980 4.9e-14 80.5 52 63.5
Oeu000038.3 Olea europaea HOM05D001670 ORTHO05D002980 4.9e-14 80.5 52 65.4
unitig_0.g1315 Utricularia gibba HOM05D001670 ORTHO05D002980 6.4e-14 80.1 52 59.6
MELO3C005963.2 Cucumis melo HOM05D001670 ORTHO05D002980 8.3e-14 79.7 52 61.5
CsaV3_3G007410 Cucumis sativus L. HOM05D001670 ORTHO05D002980 8.3e-14 79.7 52 61.5
FvH4_7g10770 Fragaria vesca HOM05D001670 ORTHO05D002980 8.3e-14 79.7 52 61.5
FAN06G0311 Fragaria x ananassa HOM05D001670 ORTHO05D002980 8.3e-14 79.7 52 61.5
FAN06G1683 Fragaria x ananassa HOM05D001670 ORTHO05D002980 8.3e-14 79.7 52 61.5
Psat4g209400 Pisum sativum HOM05D001670 ORTHO05D002980 8.3e-14 79.7 52 61.5
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 8.3e-14 79.7 50 66.0
CARHR248060 Cardamine hirsuta HOM05D001670 ORTHO05D002980 1.4e-13 79.0 51 66.7
Gohir.D11G082433 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.4e-13 79.0 52 59.6
Gorai.007G088100 Gossypium raimondii HOM05D001670 ORTHO05D002980 1.4e-13 79.0 52 59.6
CSS0023490 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 1.9e-13 78.6 52 57.7
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 1.9e-13 78.6 52 57.7
Ciclev10018430m.g Citrus clementina HOM05D001670 ORTHO05D002980 1.9e-13 78.6 52 61.5
FAN03G2300 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.9e-13 78.6 52 61.5
Medtr8g005820 Medicago truncatula HOM05D001670 ORTHO05D002980 1.9e-13 78.6 52 59.6
Sc13g0006690 Simmondsia chinensis HOM05D001670 ORTHO05D002980 1.9e-13 78.6 51 60.8
CSS0024398 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 2.4e-13 78.2 52 59.6
FAN10G0390 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.4e-13 78.2 52 59.6
FAN10G2564 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.4e-13 78.2 52 59.6
Nn6g33938 Nelumbo nucifera HOM05D001670 ORTHO05D002980 2.4e-13 78.2 52 57.7
Phvul.010G056800 Phaseolus vulgaris HOM05D001670 ORTHO05D002980 2.4e-13 78.2 52 59.6
Migut.B01578 Erythranthe guttata HOM05D001670 ORTHO05D002980 3.2e-13 77.8 51 62.7
Glyma.03G118400 Glycine max HOM05D001670 ORTHO05D002980 3.2e-13 77.8 52 59.6
TPR.G28734 Trifolium pratense HOM05D001670 ORTHO05D002980 3.2e-13 77.8 52 57.7
VMungo0331G0876 Vigna mungo HOM05D001670 ORTHO05D002980 3.2e-13 77.8 52 59.6
arahy.Tifrunner.gnm1.ann1.1V1Y36 Arachis hypogaea HOM05D001670 ORTHO05D002980 4.1e-13 77.4 52 59.6
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 4.1e-13 77.4 52 59.6
A09p00800 Brassica napus HOM05D001670 ORTHO05D002980 4.1e-13 77.4 53 67.9
PSO170G5961 Papaver somniferum HOM05D001670 ORTHO05D002980 4.1e-13 77.4 52 61.5
DCAR_015867 Daucus carota HOM05D001670 ORTHO05D002980 5.4e-13 77.0 52 61.5
PGR042G0136 Punica granatum HOM05D001670 ORTHO05D002980 5.4e-13 77.0 52 59.6
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 5.4e-13 77.0 52 59.6
EL10Ac1g00822 Beta vulgaris HOM05D001670 ORTHO05D002980 7.1e-13 76.6 52 61.5
FAN01G0667 Fragaria x ananassa HOM05D001670 ORTHO05D002980 7.1e-13 76.6 52 59.6
Gohir.D12G098300 Gossypium hirsutum HOM05D001670 ORTHO05D002980 7.1e-13 76.6 52 59.6
Gorai.008G107100 Gossypium raimondii HOM05D001670 ORTHO05D002980 7.1e-13 76.6 52 59.6
Sabra02G0111500 Salix brachista HOM05D001670 ORTHO05D002980 7.1e-13 76.6 52 59.6
RcHm_v2.0_Chr1g0348711 Rosa chinensis HOM05D001670 ORTHO05D002980 1.2e-12 75.9 52 57.7
Atru.chr1.760 Acer truncatum HOM05D001670 ORTHO05D002980 1.6e-12 75.5 52 59.6
SGA_v2.0_scaffold399G50813 Striga asiatica HOM05D001670 ORTHO05D002980 1.6e-12 75.5 52 57.7
THA.LOC104814077 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 1.6e-12 75.5 52 63.5
TAR375G0686 Trochodendron aralioides HOM05D001670 ORTHO05D002980 1.6e-12 75.5 52 59.6
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 2.1e-12 75.1 52 55.8
TAR629G1646 Trochodendron aralioides HOM05D001670 ORTHO05D002980 2.1e-12 75.1 50 62.0
GSVIVG01018721001 Vitis vinifera HOM05D001670 ORTHO05D002980 2.1e-12 75.1 51 58.8
MSTRG.20721 Avicennia marina HOM05D001670 ORTHO05D002980 3.5e-12 74.3 52 57.7
Duzib068G1107 Durio zibethinus HOM05D001670 ORTHO05D002980 3.5e-12 74.3 52 57.7
MBI03_g02274_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 3.5e-12 74.3 52 53.8
MBI14_g46621_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 3.5e-12 74.3 52 53.8
MBI15_g00866_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 3.5e-12 74.3 52 53.8
PSO017G3667 Papaver somniferum HOM05D001670 ORTHO05D002980 3.5e-12 74.3 52 59.6
ATR0317G075 Amborella trichopoda HOM05D001670 ORTHO05D002980 4.6e-12 73.9 52 55.8
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 4.6e-12 73.9 52 53.8
Dinv06565 Davidia involucrata HOM05D001670 ORTHO05D002980 4.6e-12 73.9 52 57.7
Peaxi162Scf00377g00038 Petunia axillaris HOM05D001670 ORTHO05D002980 4.6e-12 73.9 52 59.6
TAR374G0935 Trochodendron aralioides HOM05D001670 ORTHO05D002980 4.6e-12 73.9 52 57.7
CDE09G0971 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 6.0e-12 73.6 52 57.7
COL.COLO4_12469 Corchorus olitorius HOM05D001670 ORTHO05D002980 6.0e-12 73.6 51 56.9
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 6.0e-12 73.6 52 55.8
CANSAT21G0618 Cannabis sativa HOM05D001670 ORTHO05D002980 7.8e-12 73.2 48 64.6
Lj3g0005567 Lotus japonicus HOM05D001670 ORTHO05D002980 7.8e-12 73.2 52 57.7
SalBow5G2000 Salvia bowleyana HOM05D001670 ORTHO05D002980 7.8e-12 73.2 52 57.7
vmacro21039 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 7.8e-12 73.2 52 55.8
GSVIVG01018178001 Vitis vinifera HOM05D001670 ORTHO05D002980 7.8e-12 73.2 51 56.9
CDE11G0683 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 1.0e-11 72.8 52 57.7
SGA_v2.0_scaffold153G36957 Striga asiatica HOM05D001670 ORTHO05D002980 1.0e-11 72.8 52 55.8
MBI04_g09509_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 1.3e-11 72.4 52 51.9
Nitab4.5_0002304g0030 Nicotiana tabacum HOM05D001670 ORTHO05D002980 1.3e-11 72.4 52 57.7
PSO421G0693 Papaver somniferum HOM05D001670 ORTHO05D002980 1.3e-11 72.4 52 55.8
Pp3c21_18770 Physcomitrium patens HOM05D001670 ORTHO05D002980 1.3e-11 72.4 63 49.2
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 1.7e-11 72.0 52 55.8
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 1.7e-11 72.0 52 55.8
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 1.7e-11 72.0 52 55.8
PSO104G0201 Papaver somniferum HOM05D001670 ORTHO05D002980 2.3e-11 71.6 52 55.8
Cc02_g24610 Coffea canephora HOM05D001670 ORTHO05D002980 5.1e-11 70.5 52 53.8
DCAR_025093 Daucus carota HOM05D001670 ORTHO05D002980 5.1e-11 70.5 52 55.8
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 5.1e-11 70.5 57 52.6
Lj7C538G19 Lonicera japonica HOM05D001670 ORTHO05D002980 6.6e-11 70.1 52 55.8
CAN.G899.12 Capsicum annuum HOM05D001670 ORTHO05D002980 8.6e-11 69.7 52 53.8
Hund27384 Selenicereus undatus HOM05D001670 ORTHO05D002980 8.6e-11 69.7 52 53.8
HanXRQChr04g0123421 Helianthus annuus HOM05D001670 ORTHO05D002980 1.1e-10 69.3 50 58.0
Solyc01g090780.3 Solanum lycopersicum HOM05D001670 ORTHO05D002980 1.9e-10 68.6 52 53.8
vmacro06810 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 1.9e-10 68.6 50 54.0
MBI02_g32971_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 2.5e-10 68.2 52 50.0
Oeu064574.1 Olea europaea HOM05D001670 ORTHO05D002980 4.3e-10 67.4 52 55.8
Rhsim03G0166300 Rhododendron simsii HOM05D001670 ORTHO05D002980 4.3e-10 67.4 53 49.1
Sopen01g036510 Solanum pennellii HOM05D001670 ORTHO05D002980 4.3e-10 67.4 52 53.8
Zm00001eb404410 Zea mays HOM05D001670 ORTHO05D002980 7.3e-10 66.6 51 51.0
Atru.chr5.219 Acer truncatum HOM05D001670 ORTHO05D002980 9.5e-10 66.2 80 42.5
HanXRQChr06g0168951 Helianthus annuus HOM05D001670 ORTHO05D002980 9.5e-10 66.2 50 56.0
Lsat_1_v5_gn_7_10221 Lactuca sativa HOM05D001670 ORTHO05D002980 1.2e-09 65.9 50 54.0
Os10g0556700 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 1.6e-09 65.5 52 46.2
HPP92_007431 Vanilla planifolia HOM05D001670 ORTHO05D002980 2.1e-09 65.1 52 51.9
ECA236G0609 Erigeron canadensis HOM05D001670 ORTHO05D002980 2.8e-09 64.7 50 54.0
Lsat_1_v5_gn_8_148781 Lactuca sativa HOM05D001670 ORTHO05D002980 6.2e-09 63.5 50 50.0
Zm00001eb000340 Zea mays HOM05D001670 ORTHO05D002980 8.1e-09 63.2 51 47.1
SHI13579 Sapria himalayana HOM05D001670 ORTHO05D002980 1.1e-08 62.8 52 44.2
CSS0019437 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D011598 1.4e-08 62.4 52 48.1
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 3.1e-08 61.2 50 48.0
CAN.G78.29 Capsicum annuum HOM05D001670 ORTHO05D002980 5.2e-08 60.5 49 53.1
PGSC0003DMG400000049 Solanum tuberosum HOM05D001670 ORTHO05D002980 1.2e-07 59.3 49 51.0
PGSC0003DMG401000201 Solanum tuberosum HOM05D001670 ORTHO05D002980 1.2e-07 59.3 49 51.0
SMO340G0305 Selaginella moellendorffii HOM05D001670 ORTHO05D002980 1.5e-07 58.9 47 46.8
Ah.05g173600 Amaranthus hybridus HOM05D001670 ORTHO05D002980 5.8e-07 57.0 38 60.5
Hund17061 Selenicereus undatus HOM05D001670 ORTHO05D002980 2.9e-06 54.7 46 47.8
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 4.9e-06 53.9 50 46.0


User provided reference genes

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