Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p35240 Brassica napus HOM05D005073 ORTHO05D006166 6.3e-45 183.7 92 100.0
BolC2t09540H Brassica oleracea HOM05D005073 ORTHO05D006166 5.7e-22 107.5 57 96.5
Sp5g33150 Schrenkiella parvula HOM05D005073 ORTHO05D006166 7.3e-09 63.9 40 87.5
Thhalv10018349m.g Eutrema salsugineum HOM05D005073 ORTHO05D006166 9.5e-09 63.5 40 87.5
Aa31LG4G8070 Aethionema arabicum HOM05D005073 ORTHO05D006166 1.2e-08 63.2 40 85.0
AT1G78010 Arabidopsis thaliana HOM05D005073 ORTHO05D006166 1.6e-08 62.8 40 82.5
A07p43250 Brassica napus HOM05D005073 ORTHO05D006166 2.1e-08 62.4 40 85.0
BraA07t31846Z Brassica rapa HOM05D005073 ORTHO05D006166 2.1e-08 62.4 40 85.0
BcaC08g47633 Brassica carinata HOM05D005073 ORTHO05D006166 2.8e-08 62.0 40 85.0
C06p51930 Brassica napus HOM05D005073 ORTHO05D006166 2.8e-08 62.0 40 85.0
BolC6t40215H Brassica oleracea HOM05D005073 ORTHO05D006166 2.8e-08 62.0 40 85.0
AL2G38280 Arabidopsis lyrata HOM05D005073 ORTHO05D006166 3.6e-08 61.6 40 80.0
Cpa.g.sc66.92 Carica papaya HOM05D005073 ORTHO05D006166 1.0e-07 60.1 40 75.0
QL12p035942 Quercus lobata HOM05D005073 ORTHO05D006166 1.0e-07 60.1 40 77.5
THA.LOC104810083 Tarenaya hassleriana HOM05D005073 ORTHO05D006166 1.0e-07 60.1 40 77.5
CiPaw.05G232900 Carya illinoinensis HOM05D005073 ORTHO05D006166 1.4e-07 59.7 40 77.5
ClCG03G008990 Citrullus lanatus HOM05D005073 ORTHO05D006166 1.8e-07 59.3 40 75.0
MELO3C022795.2 Cucumis melo HOM05D005073 ORTHO05D006166 1.8e-07 59.3 40 75.0
MELO3C033259.2 Cucumis melo HOM05D005073 ORTHO05D006166 1.8e-07 59.3 40 75.0
CsaV3_5G023620 Cucumis sativus L. HOM05D005073 ORTHO05D006166 1.8e-07 59.3 40 75.0
HanXRQChr10g0278501 Helianthus annuus HOM05D005073 ORTHO05D006166 1.8e-07 59.3 40 75.0
Nitab4.5_0009824g0010 Nicotiana tabacum HOM05D005073 ORTHO05D006166 1.8e-07 59.3 33 84.8
HPP92_016434 Vanilla planifolia HOM05D005073 ORTHO05D006166 1.8e-07 59.3 34 79.4
HPP92_016476 Vanilla planifolia HOM05D005073 ORTHO05D006166 1.8e-07 59.3 34 79.4
Zm00001eb178820 Zea mays HOM05D005073 ORTHO05D006166 1.8e-07 59.3 40 77.5
Lsat_1_v5_gn_6_102120 Lactuca sativa HOM05D005073 ORTHO05D006166 2.3e-07 58.9 40 75.0
Peaxi162Scf00310g00019 Petunia axillaris HOM05D005073 ORTHO05D006166 2.3e-07 58.9 33 84.8
unitig_0.g2069 Utricularia gibba HOM05D005073 ORTHO05D006166 2.3e-07 58.9 41 70.7
ECA246G0226 Erigeron canadensis HOM05D005073 ORTHO05D006166 3.0e-07 58.5 40 72.5
Lj4C715T1 Lonicera japonica HOM05D005073 ORTHO05D006166 3.0e-07 58.5 40 70.0
Oeu024557.1 Olea europaea HOM05D005073 ORTHO05D006166 3.0e-07 58.5 40 70.0
Os08g0407000 Oryza sativa ssp. japonica HOM05D005073 ORTHO05D006166 3.0e-07 58.5 40 72.5
RcHm_v2.0_Chr7g0239951 Rosa chinensis HOM05D005073 ORTHO05D006166 3.0e-07 58.5 40 75.0
Sed0012840 Sechium edule HOM05D005073 ORTHO05D006166 3.0e-07 58.5 40 75.0
Hund26651 Selenicereus undatus HOM05D005073 ORTHO05D006166 3.0e-07 58.5 40 72.5
AUR62022347 Chenopodium quinoa HOM05D005073 ORTHO05D006166 4.0e-07 58.2 40 72.5
AUR62034358 Chenopodium quinoa HOM05D005073 ORTHO05D006166 4.0e-07 58.2 40 72.5
COL.COLO4_16466 Corchorus olitorius HOM05D005073 ORTHO05D006166 4.0e-07 58.2 40 77.5
Haze_00571 Corylus avellana HOM05D005073 ORTHO05D006166 4.0e-07 58.2 40 75.0
MD08G1177300 Malus domestica HOM05D005073 ORTHO05D006166 4.0e-07 58.2 40 72.5
MD15G1355000 Malus domestica HOM05D005073 ORTHO05D006166 4.0e-07 58.2 40 72.5
Prupe.1G511900 Prunus persica HOM05D005073 ORTHO05D006166 4.0e-07 58.2 40 72.5
TAR381G0980 Trochodendron aralioides HOM05D005073 ORTHO05D006166 4.0e-07 58.2 40 75.0
Actinidia30750 Actinidia chinensis HOM05D005073 ORTHO05D006166 5.2e-07 57.8 40 70.0
FAN08G1532 Fragaria x ananassa HOM05D005073 ORTHO05D006166 5.2e-07 57.8 40 72.5
PGSC0003DMG400009470 Solanum tuberosum HOM05D005073 ORTHO05D006166 5.2e-07 57.8 33 81.8
ATR0564G350 Amborella trichopoda HOM05D005073 ORTHO05D006166 6.8e-07 57.4 40 72.5
Ciclev10003846m.g Citrus clementina HOM05D005073 ORTHO05D006166 6.8e-07 57.4 40 77.5
MELO3C029590.2 Cucumis melo HOM05D005073 ORTHO05D034916 6.8e-07 57.4 48 62.5
Duzib041G0650 Durio zibethinus HOM05D005073 ORTHO05D006166 6.8e-07 57.4 34 76.5
EL10Ac1g01681 Beta vulgaris HOM05D005073 ORTHO05D006166 8.9e-07 57.0 40 70.0
FvH4_5g38010 Fragaria vesca HOM05D005073 ORTHO05D006166 8.9e-07 57.0 40 70.0
FAN04G2698 Fragaria x ananassa HOM05D005073 ORTHO05D006166 8.9e-07 57.0 40 70.0
FAN13G1954 Fragaria x ananassa HOM05D005073 ORTHO05D006166 8.9e-07 57.0 40 70.0
FAN18G0258 Fragaria x ananassa HOM05D005073 ORTHO05D006166 8.9e-07 57.0 40 70.0
MBI02_g30882_MAGBIO Magnolia biondii HOM05D005073 ORTHO05D006166 8.9e-07 57.0 34 76.5
Nn1g05274 Nelumbo nucifera HOM05D005073 ORTHO05D006166 8.9e-07 57.0 33 78.8
SEGI_22824 Sequoiadendron giganteum HOM05D005073 ORTHO05D006166 8.9e-07 57.0 44 68.2
Sopen04g028940 Solanum pennellii HOM05D005073 ORTHO05D006166 8.9e-07 57.0 33 81.8
Thecc.08G112000 Theobroma cacao HOM05D005073 ORTHO05D006166 8.9e-07 57.0 40 75.0
GSVIVG01008990001 Vitis vinifera HOM05D005073 ORTHO05D006166 8.9e-07 57.0 40 72.5
PSO210G7769 Papaver somniferum HOM05D005073 ORTHO05D006166 1.2e-06 56.6 40 72.5
SalBow7G0210 Salvia bowleyana HOM05D005073 ORTHO05D006166 1.2e-06 56.6 40 72.5
PSO447G0212 Papaver somniferum HOM05D005073 ORTHO05D006166 1.5e-06 56.2 40 70.0
Sc12g0004220 Simmondsia chinensis HOM05D005073 ORTHO05D006166 1.5e-06 56.2 40 67.5
Aqoxy1G01853 Aquilegia oxysepala HOM05D005073 ORTHO05D006166 2.0e-06 55.8 40 67.5
Eucgr.F02969 Eucalyptus grandis HOM05D005073 ORTHO05D006166 2.0e-06 55.8 40 72.5
Nitab4.5_0000469g0190 Nicotiana tabacum HOM05D005073 ORTHO05D006166 2.0e-06 55.8 33 81.8
CSS0000538 Camellia sinensis var. sinensis HOM05D005073 ORTHO05D006166 2.6e-06 55.5 40 65.0
CSS0031049 Camellia sinensis var. sinensis HOM05D005073 ORTHO05D006166 2.6e-06 55.5 40 65.0
Migut.C00179 Erythranthe guttata HOM05D005073 ORTHO05D006166 2.6e-06 55.5 40 67.5
CANSAT54G2794 Cannabis sativa HOM05D005073 ORTHO05D006166 3.4e-06 55.1 33 75.8
Lalb_Chr23g0270691 Lupinus albus HOM05D005073 ORTHO05D006166 3.4e-06 55.1 40 67.5
Atru.BG.242.p Acer truncatum HOM05D005073 ORTHO05D006166 4.4e-06 54.7 40 72.5
Ah.16g109530 Amaranthus hybridus HOM05D005073 ORTHO05D006166 4.4e-06 54.7 40 65.0
arahy.Tifrunner.gnm1.ann1.K8DV01 Arachis hypogaea HOM05D005073 ORTHO05D006166 4.4e-06 54.7 40 65.0
arahy.Tifrunner.gnm1.ann1.T10PLA Arachis hypogaea HOM05D005073 ORTHO05D006166 4.4e-06 54.7 40 65.0
Ca_15226_v3 Cicer arietinum L. HOM05D005073 ORTHO05D006166 4.4e-06 54.7 40 62.5
DCAR_008707 Daucus carota HOM05D005073 ORTHO05D006166 4.4e-06 54.7 40 67.5
Manes.18G070400 Manihot esculenta HOM05D005073 ORTHO05D006166 4.4e-06 54.7 40 70.0
vmacro21228 Vaccinium macrocarpon HOM05D005073 ORTHO05D006166 4.4e-06 54.7 40 67.5
CDE03G0055 Ceratophyllum demersum HOM05D005073 ORTHO05D006166 5.7e-06 54.3 34 70.6
Cc10_g05860 Coffea canephora HOM05D005073 ORTHO05D006166 5.7e-06 54.3 33 72.7
Lj1g0017290 Lotus japonicus HOM05D005073 ORTHO05D006166 5.7e-06 54.3 40 62.5
Medtr3g073790 Medicago truncatula HOM05D005073 ORTHO05D006166 5.7e-06 54.3 40 62.5
Psat5g137200 Pisum sativum HOM05D005073 ORTHO05D006166 5.7e-06 54.3 40 62.5
TPR.G34614 Trifolium pratense HOM05D005073 ORTHO05D006166 5.7e-06 54.3 40 62.5
Glyma.04G105000 Glycine max HOM05D005073 ORTHO05D006166 7.5e-06 53.9 40 62.5
Glyma.06G106000 Glycine max HOM05D005073 ORTHO05D006166 7.5e-06 53.9 40 62.5
Gorai.009G239900 Gossypium raimondii HOM05D005073 ORTHO05D006166 7.5e-06 53.9 40 72.5
VMungo1309G2662 Vigna mungo HOM05D005073 ORTHO05D006166 7.5e-06 53.9 40 62.5
Gohir.A05G229400 Gossypium hirsutum HOM05D005073 ORTHO05D006166 9.8e-06 53.5 40 72.5


User provided reference genes

Program Settings