Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p18690 Brassica napus HOM05D005626 ORTHO05D007372 3.2e-200 702.2 560 100.0
BolC2t08014H Brassica oleracea HOM05D005626 ORTHO05D007372 1.2e-191 673.7 560 98.2
BcaC03g14458 Brassica carinata HOM05D005626 ORTHO05D007372 2.1e-175 619.8 552 94.9
A02p11310 Brassica napus HOM05D005626 ORTHO05D007372 3.3e-165 585.9 556 91.0
Sp6g15250 Schrenkiella parvula HOM05D005626 ORTHO05D007372 2.2e-164 583.2 561 89.3
BraA02t06193Z Brassica rapa HOM05D005626 ORTHO05D007372 4.8e-164 582.0 556 90.8
Thhalv10013148m.g Eutrema salsugineum HOM05D005626 ORTHO05D007372 3.1e-155 552.7 556 86.3
AT5G53080 Arabidopsis thaliana HOM05D005626 ORTHO05D007372 1.9e-152 543.5 559 82.8
CARHR266100 Cardamine hirsuta HOM05D005626 ORTHO05D007372 1.9e-152 543.5 562 85.4
Carub.0008s1328 Capsella rubella HOM05D005626 ORTHO05D007372 4.2e-152 542.3 562 83.6
AL8G27710 Arabidopsis lyrata HOM05D005626 ORTHO05D007372 8.3e-148 528.1 559 83.7
BcaB05g22007 Brassica carinata HOM05D005626 ORTHO05D007372 4.2e-144 515.8 559 79.1
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 5.9e-138 495.4 542 63.3
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 4.6e-130 469.2 518 83.0
THA.LOC104799967 Tarenaya hassleriana HOM05D005626 ORTHO05D007372 5.2e-126 455.7 564 66.0
Cfa016215 Carpinus fangiana HOM05D005626 ORTHO05D007372 8.7e-89 332.0 568 55.6
GSVIVG01038569001 Vitis vinifera HOM05D005626 ORTHO05D007372 7.4e-88 328.9 464 65.1
Ciclev10020013m.g Citrus clementina HOM05D005626 ORTHO05D007372 6.2e-87 325.9 466 68.7
Gohir.D09G179900 Gossypium hirsutum HOM05D005626 ORTHO05D007372 6.2e-87 325.9 523 59.8
CiPaw.06G045100 Carya illinoinensis HOM05D005626 ORTHO05D007372 6.9e-86 322.4 572 62.1
MD01G1222800 Malus domestica HOM05D005626 ORTHO05D007372 2.2e-84 317.4 534 61.4
Thecc.03G201200 Theobroma cacao HOM05D005626 ORTHO05D007372 1.9e-83 314.3 577 58.6
Actinidia18659 Actinidia chinensis HOM05D005626 ORTHO05D007372 2.4e-83 313.9 470 60.6
Nn1g00302 Nelumbo nucifera HOM05D005626 ORTHO05D007372 2.4e-83 313.9 469 71.4
Cpa.g.sc3.101 Carica papaya HOM05D005626 ORTHO05D007372 5.5e-83 312.8 533 65.9
Migut.F00199 Erythranthe guttata HOM05D005626 ORTHO05D007372 5.5e-83 312.8 519 49.5
Lj1g0019302 Lotus japonicus HOM05D005626 ORTHO05D007372 1.2e-82 311.6 522 62.3
Atru.chr12.2245_Atru.chr12.2244 Acer truncatum HOM05D005626 ORTHO05D007372 1.6e-82 311.2 469 52.0
Prupe.2G313200 Prunus persica HOM05D005626 ORTHO05D007372 2.7e-82 310.5 530 57.2
MBI07_g24765_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 6.0e-82 309.3 542 44.5
Gorai.006G201900 Gossypium raimondii HOM05D005626 ORTHO05D007372 1.0e-81 308.5 555 53.2
COL.COLO4_16792 Corchorus olitorius HOM05D005626 ORTHO05D007032 1.8e-81 307.8 532 64.3
Manes.06G012351 Manihot esculenta HOM05D005626 ORTHO05D007372 1.8e-81 307.8 526 47.7
TAR375G0360 Trochodendron aralioides HOM05D005626 ORTHO05D007372 8.7e-81 305.4 467 67.2
Duzib084G0104 Durio zibethinus HOM05D005626 ORTHO05D007372 1.1e-80 305.1 470 71.5
QL09p007984 Quercus lobata HOM05D005626 ORTHO05D007372 1.1e-80 305.1 553 58.6
EL10Ac3g05260 Beta vulgaris HOM05D005626 ORTHO05D007372 1.9e-80 304.3 468 60.3
Hund11648 Selenicereus undatus HOM05D005626 ORTHO05D007372 1.9e-80 304.3 544 55.9
Eucgr.A01448 Eucalyptus grandis HOM05D005626 ORTHO05D007372 3.3e-80 303.5 474 58.6
arahy.Tifrunner.gnm1.ann1.ULB6CG Arachis hypogaea HOM05D005626 ORTHO05D007372 1.6e-79 301.2 519 55.7
Lsat_1_v5_gn_9_49841 Lactuca sativa HOM05D005626 ORTHO05D007372 4.8e-79 299.7 513 62.0
Potri.015G010800 Populus trichocarpa HOM05D005626 ORTHO05D007372 4.0e-78 296.6 555 53.7
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 6.9e-78 295.8 510 62.7
CANSAT21G0821 Cannabis sativa HOM05D005626 ORTHO05D007372 6.5e-76 289.3 508 48.4
Dinv29256 Davidia involucrata HOM05D005626 ORTHO05D007372 7.1e-75 285.8 468 57.1
Hma1.2p1_2307F.1_g319430 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 7.1e-75 285.8 562 60.0
TPR.G33639 Trifolium pratense HOM05D005626 ORTHO05D007372 7.1e-75 285.8 527 56.2
AUR62006074 Chenopodium quinoa HOM05D005626 ORTHO05D007372 2.1e-74 284.3 520 52.5
Hma1.2p1_0591F.1_g185250 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 2.7e-74 283.9 525 63.6
VMungo1309G2515 Vigna mungo HOM05D005626 ORTHO05D007372 2.7e-74 283.9 494 64.0
Sed0007830 Sechium edule HOM05D005626 ORTHO05D007372 2.5e-72 277.3 562 58.7
CSS0044766 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.3e-71 275.0 528 53.2
Lalb_Chr08g0240121 Lupinus albus HOM05D005626 ORTHO05D007372 1.3e-71 275.0 508 58.9
arahy.Tifrunner.gnm1.ann1.DCMH6Q Arachis hypogaea HOM05D005626 ORTHO05D007372 2.8e-71 273.9 449 60.4
MSTRG.27018 Avicennia marina HOM05D005626 ORTHO05D007372 3.7e-71 273.5 449 61.7
AUR62035551 Chenopodium quinoa HOM05D005626 ORTHO05D007372 1.4e-70 271.6 484 50.4
Cc02_g01370 Coffea canephora HOM05D005626 ORTHO05D007372 1.8e-70 271.2 469 40.1
arahy.Tifrunner.gnm1.ann1.CHU3M4 Arachis hypogaea HOM05D005626 ORTHO05D007372 3.1e-70 270.4 517 54.9
ClCG01G000360 Citrullus lanatus HOM05D005626 ORTHO05D007372 4.1e-70 270.0 565 52.4
FAN06G4319 Fragaria x ananassa HOM05D005626 ORTHO05D007372 9.0e-70 268.9 466 61.8
Sabra15G0008900 Salix brachista HOM05D005626 ORTHO05D007372 9.0e-70 268.9 468 57.9
Solyc03g082990.3 Solanum lycopersicum HOM05D005626 ORTHO05D007372 1.5e-69 268.1 509 43.4
Sopen03g022800 Solanum pennellii HOM05D005626 ORTHO05D007372 1.5e-69 268.1 509 43.6
CsaV3_5G000430 Cucumis sativus L. HOM05D005626 ORTHO05D007372 2.6e-69 267.3 550 52.7
FvH4_7g31990 Fragaria vesca HOM05D005626 ORTHO05D007372 5.9e-69 266.2 466 61.6
Glyma.04G234300 Glycine max HOM05D005626 ORTHO05D007372 5.9e-69 266.2 523 61.6
PGR042G1168 Punica granatum HOM05D005626 ORTHO05D007372 1.0e-68 265.4 476 59.2
ECA232G0910 Erigeron canadensis HOM05D005626 ORTHO05D007372 5.0e-68 263.1 466 66.7
Nitab4.5_0005491g0050 Nicotiana tabacum HOM05D005626 ORTHO05D007372 5.0e-68 263.1 476 45.4
HanXRQChr15g0485681 Helianthus annuus HOM05D005626 ORTHO05D007372 6.5e-68 262.7 526 61.8
Peaxi162Scf00740g00226 Petunia axillaris HOM05D005626 ORTHO05D007372 1.4e-67 261.5 497 45.7
Aqoxy5G04311 Aquilegia oxysepala HOM05D005626 ORTHO05D007372 7.2e-67 259.2 476 63.0
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 1.2e-66 258.5 481 38.3
CDE02G3804 Ceratophyllum demersum HOM05D005626 ORTHO05D007372 2.1e-66 257.7 466 45.5
Phvul.009G051300 Phaseolus vulgaris HOM05D005626 ORTHO05D007372 7.9e-66 255.8 531 57.3
Haze_00226 Corylus avellana HOM05D005626 ORTHO05D007372 1.0e-65 255.4 529 53.5
RcHm_v2.0_Chr1g0381501 Rosa chinensis HOM05D005626 ORTHO05D007372 1.8e-65 254.6 509 57.6
Oeu010695.1 Olea europaea HOM05D005626 ORTHO05D007372 3.9e-65 253.4 502 44.4
Ca_16720_v3 Cicer arietinum L. HOM05D005626 ORTHO05D007372 6.7e-65 252.7 527 55.6
PSO063G0511 Papaver somniferum HOM05D005626 ORTHO05D007372 6.7e-65 252.7 488 54.5
CAN.G481.28 Capsicum annuum HOM05D005626 ORTHO05D007372 2.5e-64 250.8 482 42.3
Psat5g076080 Pisum sativum HOM05D005626 ORTHO05D007372 9.7e-64 248.8 474 58.6
TWI39G0896 Tripterygium wilfordii HOM05D005626 ORTHO05D007372 2.2e-63 247.7 468 59.0
MELO3C005892.2 Cucumis melo HOM05D005626 ORTHO05D007372 1.1e-62 245.4 471 56.3
CSS0003989 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 4.1e-62 243.4 594 39.1
Medtr3g091780 Medicago truncatula HOM05D005626 ORTHO05D007372 6.9e-62 242.7 523 58.3
PSO170G4344 Papaver somniferum HOM05D005626 ORTHO05D007372 1.2e-61 241.9 518 52.5
QL09p008055 Quercus lobata HOM05D005626 ORTHO05D007372 3.4e-61 240.4 502 45.6
Sc25g0000940 Simmondsia chinensis HOM05D005626 ORTHO05D007372 2.2e-60 237.7 419 58.0
Lj8A623T21 Lonicera japonica HOM05D005626 ORTHO05D007372 2.7e-58 230.7 461 54.2
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.1e-56 225.3 433 62.4
FAN10G2571 Fragaria x ananassa HOM05D005626 ORTHO05D007372 3.3e-56 223.8 509 50.1
unitig_92.g28249 Utricularia gibba HOM05D005626 ORTHO05D007372 1.7e-55 221.5 466 43.3
Manes.06G011400 Manihot esculenta HOM05D005626 ORTHO05D007372 3.0e-49 200.7 386 48.4
arahy.Tifrunner.gnm1.ann1.1DU7LF Arachis hypogaea HOM05D005626 ORTHO05D007372 3.9e-49 200.3 524 35.7
BcaB01g04215 Brassica carinata HOM05D005626 ORTHO05D007372 7.4e-48 196.1 154 71.4
Gohir.A09G185000 Gossypium hirsutum HOM05D005626 ORTHO05D007372 1.3e-47 195.3 285 61.1
ATR0730G125 Amborella trichopoda HOM05D005626 ORTHO05D007372 1.4e-46 191.8 333 55.9
HPP92_005288 Vanilla planifolia HOM05D005626 ORTHO05D007372 5.9e-45 186.4 331 45.0
SalBow4G1489 Salvia bowleyana HOM05D005626 ORTHO05D007372 3.2e-43 180.6 532 31.4
MBI07_g43862_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 2.7e-42 177.6 464 30.2
FAN10G0040 Fragaria x ananassa HOM05D005626 ORTHO05D009683 2.6e-40 171.0 398 30.7
CSS0000100 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 2.8e-39 167.5 538 28.1
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 1.7e-36 158.3 190 46.8
Manes.06G012101 Manihot esculenta HOM05D005626 ORTHO05D007372 1.9e-35 154.8 195 43.1
MBI19_g14786_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 3.6e-34 150.6 129 58.1
BcaB01g04214 Brassica carinata HOM05D005626 ORTHO05D007372 4.4e-32 143.7 83 88.0
PGSC0003DMG400018528 Solanum tuberosum HOM05D005626 ORTHO05D007372 1.1e-30 139.0 205 40.5
Mapoly0045s0029 Marchantia polymorpha HOM05D005626 ORTHO05D007372 5.0e-28 130.2 321 48.3
Glyma.06G130333 Glycine max HOM05D005626 ORTHO05D007372 6.1e-26 123.2 118 53.4
Lj1A1021T49 Lonicera japonica HOM05D005626 ORTHO05D007372 1.9e-19 101.7 138 43.5
MBI19_g14787_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.9e-19 101.7 74 59.5
Pp3c5_16230 Physcomitrium patens HOM05D005626 ORTHO05D007372 1.9e-19 101.7 326 28.8
C03p18390 Brassica napus HOM05D035051 ORTHO05D031918 8.0e-18 96.3 172 41.3
BolC3t14236H Brassica oleracea HOM05D035051 ORTHO05D031918 8.0e-18 96.3 172 41.3
CSS0006573 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.0e-17 95.9 85 56.5
Manes.06G011750 Manihot esculenta HOM05D005626 ORTHO05D007372 1.4e-17 95.5 65 64.6
AagrBONN_evm.TU.Sc2ySwM_369.443 Anthoceros agrestis HOM05D005626 ORTHO05D007372 6.8e-17 93.2 141 37.6
Pp3c5_16240 Physcomitrium patens HOM05D005626 ORTHO05D007372 1.7e-15 88.6 355 45.6
Pp3c23_14930 Physcomitrium patens HOM05D005626 ORTHO05D007372 5.4e-14 83.6 168 31.0
Pp3c16_9300 Physcomitrium patens HOM05D005626 ORTHO05D007372 2.0e-13 81.6 174 29.9
Mapoly0001s0084 Marchantia polymorpha HOM05D005626 ORTHO05D007372 2.7e-13 81.3 123 32.5
BcaC01g06180 Brassica carinata HOM05D035051 ORTHO05D031918 6.0e-13 80.1 168 38.1
Lj1C1019T10 Lonicera japonica HOM05D005626 ORTHO05D007372 6.0e-13 80.1 78 55.1
Pp3c8_12740 Physcomitrium patens HOM05D005626 ORTHO05D007372 1.0e-12 79.3 141 33.3
Actinidia06140 Actinidia chinensis HOM05D005626 ORTHO05D007372 8.6e-12 76.3 60 60.0
QL09p008114 Quercus lobata HOM05D005626 ORTHO05D007372 6.2e-10 70.1 52 63.5
MD07G1293500 Malus domestica HOM05D005626 ORTHO05D007372 5.2e-09 67.0 53 56.6
MD07G1293400 Malus domestica HOM05D005626 ORTHO05D007372 8.9e-09 66.2 69 53.6
Glyma.06G130267 Glycine max HOM05D005626 ORTHO05D007372 9.8e-08 62.8 115 34.8
Lj1A1021T50 Lonicera japonica HOM05D005626 ORTHO05D007372 3.7e-07 60.8 50 58.0
QL09p008133 Quercus lobata HOM05D005626 ORTHO05D007372 9.2e-06 56.2 33 78.8


User provided reference genes

Program Settings