Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p13590 Brassica napus HOM05D006136 ORTHO05D007244 3.9e-102 374.8 188 100.0
BolC2t07471H Brassica oleracea HOM05D006136 ORTHO05D007244 3.9e-102 374.8 188 100.0
BcaC03g14120 Brassica carinata HOM05D009052 ORTHO05D011796 4.5e-82 308.1 167 94.0
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 4.0e-30 135.6 90 76.7
A02p07950 Brassica napus HOM05D006136 ORTHO05D007244 6.4e-28 128.3 183 47.0
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 2.4e-27 126.3 91 71.4
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 1.5e-21 107.1 80 75.0
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 2.9e-20 102.8 78 74.4
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 2.9e-20 102.8 78 74.4
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 6.4e-20 101.7 83 72.3
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 6.4e-20 101.7 83 72.3
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 8.4e-20 101.3 87 60.9
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 1.1e-19 100.9 85 70.6
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 4.2e-19 99.0 77 72.7
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 5.4e-19 98.6 87 62.1
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 9.3e-19 97.8 78 70.5
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 1.3e-17 94.0 66 77.3
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 3.0e-17 92.8 80 66.2
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 7.6e-13 78.2 68 57.4
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 8.4e-12 74.7 74 56.8
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 3.2e-11 72.8 73 56.2
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 3.2e-11 72.8 83 53.0
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 5.4e-11 72.0 73 56.2
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 7.1e-11 71.6 75 56.0
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 7.1e-11 71.6 73 56.2
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 9.3e-11 71.2 73 54.8
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 9.3e-11 71.2 125 40.8
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 1.2e-10 70.9 76 52.6
arahy.Tifrunner.gnm1.ann1.QC7K1D Arachis hypogaea HOM05D006136 ORTHO05D007244 1.2e-10 70.9 76 52.6
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 1.2e-10 70.9 73 52.1
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 1.2e-10 70.9 73 54.8
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 1.6e-10 70.5 125 40.8
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 1.6e-10 70.5 125 40.8
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 2.1e-10 70.1 79 50.6
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 2.1e-10 70.1 73 53.4
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 2.7e-10 69.7 73 50.7
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 2.7e-10 69.7 78 50.0
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 4.6e-10 68.9 73 53.4
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 4.6e-10 68.9 73 53.4
arahy.Tifrunner.gnm1.ann1.Q88MA9 Arachis hypogaea HOM05D006136 ORTHO05D007244 7.9e-10 68.2 76 50.0
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 7.9e-10 68.2 64 54.7
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 7.9e-10 68.2 74 52.7
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 1.0e-09 67.8 75 53.3
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 1.0e-09 67.8 77 50.6
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 1.3e-09 67.4 75 52.0
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 1.8e-09 67.0 73 49.3
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 2.3e-09 66.6 75 53.3
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 2.3e-09 66.6 73 50.7
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 2.3e-09 66.6 74 52.7
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 3.0e-09 66.2 82 51.2
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 3.0e-09 66.2 82 51.2
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 3.0e-09 66.2 64 53.1
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 3.0e-09 66.2 111 42.3
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 3.9e-09 65.9 74 47.3
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 3.9e-09 65.9 73 50.7
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 3.9e-09 65.9 64 54.7
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 6.7e-09 65.1 73 46.6
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 6.7e-09 65.1 75 50.7
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 6.7e-09 65.1 75 50.7
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 6.7e-09 65.1 74 48.6
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 6.7e-09 65.1 79 48.1
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 6.7e-09 65.1 79 44.3
arahy.Tifrunner.gnm1.ann1.27MYTD Arachis hypogaea HOM05D006136 ORTHO05D007244 8.7e-09 64.7 76 50.0
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 1.1e-08 64.3 73 49.3
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 1.1e-08 64.3 76 46.1
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.1e-08 64.3 64 53.1
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 1.5e-08 63.9 86 46.5
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 1.5e-08 63.9 75 50.7
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 1.5e-08 63.9 167 32.9
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 1.5e-08 63.9 79 49.4
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 1.9e-08 63.5 76 50.0
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 2.5e-08 63.2 75 49.3
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 2.5e-08 63.2 63 55.6
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 3.3e-08 62.8 74 50.0
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 4.3e-08 62.4 70 51.4
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 5.6e-08 62.0 111 41.4
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 5.6e-08 62.0 78 50.0
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 9.6e-08 61.2 61 52.5
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 9.6e-08 61.2 68 50.0
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 9.6e-08 61.2 68 50.0
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 9.6e-08 61.2 76 48.7
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 9.6e-08 61.2 76 48.7
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.3e-07 60.8 68 48.5
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 1.6e-07 60.5 80 46.2
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 1.6e-07 60.5 78 48.7
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 2.8e-07 59.7 76 50.0
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 2.8e-07 59.7 76 44.7
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 3.7e-07 59.3 81 45.7
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 4.8e-07 58.9 74 44.6
TPR.G20669 Trifolium pratense HOM05D006136 ORTHO05D007244 4.8e-07 58.9 63 47.6
SMO367G1245 Selaginella moellendorffii HOM05D006136 ORTHO05D007244 8.1e-07 58.2 102 41.2
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 1.4e-06 57.4 81 43.2
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 1.4e-06 57.4 166 33.1
Nn5g26953 Nelumbo nucifera HOM05D006136 ORTHO05D007244 1.8e-06 57.0 80 48.8
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.8e-06 57.0 68 50.0
Hma1.2p1_2895F.1_g329976 Hydrangea macrophylla HOM05D006136 ORTHO05D007244 2.4e-06 56.6 58 50.0
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 2.4e-06 56.6 73 43.8
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 4.0e-06 55.8 78 42.3


User provided reference genes

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