Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p03240 Brassica napus HOM05D004178 ORTHO05D005204 0.0e+00 1665.6 911 100.0
BraA02t04928Z Brassica rapa HOM05D004178 ORTHO05D005204 0.0e+00 1530.0 930 90.6
BcaB05g21602 Brassica carinata HOM05D004178 ORTHO05D005204 0.0e+00 1327.4 930 80.5
BcaNung06187 Brassica carinata HOM05D004178 ORTHO05D005204 0.0e+00 1327.0 906 83.2
Thhalv10012532m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 0.0e+00 1261.9 932 76.7
AT5G07660 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 0.0e+00 1246.9 932 71.4
Carub.0006s0663 Capsella rubella HOM05D004178 ORTHO05D005204 0.0e+00 1209.5 932 70.0
BcaC06g33151 Brassica carinata HOM05D004178 ORTHO05D005204 0.0e+00 1138.6 932 64.4
Thhalv10003566m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 0.0e+00 1137.5 930 64.9
AL8G38150 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 0.0e+00 1134.0 932 64.4
A03p47060 Brassica napus HOM05D004178 ORTHO05D005204 0.0e+00 1134.0 932 64.3
BraA03t13829Z Brassica rapa HOM05D004178 ORTHO05D005204 0.0e+00 1134.0 932 64.3
Sp2g24660 Schrenkiella parvula HOM05D004178 ORTHO05D005204 0.0e+00 1131.3 930 65.1
C07p45140 Brassica napus HOM05D004178 ORTHO05D005204 0.0e+00 1130.9 932 64.1
BcaC06g33236 Brassica carinata HOM05D004178 ORTHO05D005204 0.0e+00 1130.5 932 64.1
BolC7t45036H Brassica oleracea HOM05D004178 ORTHO05D005204 0.0e+00 1130.5 932 64.1
Aa31LG11G1940 Aethionema arabicum HOM05D004178 ORTHO05D005204 0.0e+00 1129.4 949 63.3
Carub.0008s2215 Capsella rubella HOM05D004178 ORTHO05D005204 0.0e+00 1123.6 932 63.9
CARHR275220 Cardamine hirsuta HOM05D004178 ORTHO05D005204 0.0e+00 1119.0 932 63.5
AT5G61460 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 0.0e+00 1108.2 932 63.3
CsaV3_4G004020 Cucumis sativus L. HOM05D004178 ORTHO05D005204 6.4e-283 977.6 931 57.0
ClCG07G016820 Citrullus lanatus HOM05D004178 ORTHO05D005204 1.6e-281 973.0 931 56.8
Sed0013674 Sechium edule HOM05D004178 ORTHO05D005204 5.1e-280 968.0 933 56.6
Nn6g33950 Nelumbo nucifera HOM05D004178 ORTHO05D005204 8.7e-280 967.2 933 56.7
CiPaw.03G020700 Carya illinoinensis HOM05D004178 ORTHO05D005204 4.8e-278 961.4 936 55.6
GSVIVG01013865001 Vitis vinifera HOM05D004178 ORTHO05D005204 4.0e-277 958.4 944 55.2
Dinv06570 Davidia involucrata HOM05D004178 ORTHO05D005204 6.9e-277 957.6 935 55.7
Thecc.03G153700 Theobroma cacao HOM05D004178 ORTHO05D005204 1.7e-275 953.0 933 55.7
Cfa008151 Carpinus fangiana HOM05D004178 ORTHO05D005204 8.4e-275 950.7 936 55.9
Ciclev10004204m.g Citrus clementina HOM05D004178 ORTHO05D005204 1.3e-272 943.3 933 54.9
Manes.06G133600 Manihot esculenta HOM05D004178 ORTHO05D005204 5.6e-271 937.9 933 55.0
TWI14G1279 Tripterygium wilfordii HOM05D004178 ORTHO05D005204 5.6e-271 937.9 934 55.9
QL09p005323 Quercus lobata HOM05D004178 ORTHO05D005204 1.6e-270 936.4 933 54.9
MELO3C017663.2 Cucumis melo HOM05D004178 ORTHO05D005204 2.8e-270 935.6 980 54.0
Actinidia13583 Actinidia chinensis HOM05D004178 ORTHO05D005204 1.1e-269 933.7 935 54.0
Peaxi162Scf00167g00610 Petunia axillaris HOM05D004178 ORTHO05D005204 7.6e-268 927.5 933 53.5
RcHm_v2.0_Chr1g0374131 Rosa chinensis HOM05D004178 ORTHO05D005204 2.1e-265 919.5 931 53.3
CSS0036077 Camellia sinensis var. sinensis HOM05D004178 ORTHO05D005204 6.7e-264 914.4 896 54.8
Solyc05g051680.4 Solanum lycopersicum HOM05D004178 ORTHO05D005204 2.5e-263 912.5 933 53.2
TAR375G0252 Trochodendron aralioides HOM05D004178 ORTHO05D005204 2.5e-263 912.5 895 55.8
Sopen05g030150 Solanum pennellii HOM05D004178 ORTHO05D005204 3.3e-263 912.1 933 53.2
PGR042G0822 Punica granatum HOM05D004178 ORTHO05D005204 6.9e-261 904.4 931 53.6
FAN01G0652 Fragaria x ananassa HOM05D004178 ORTHO05D005204 2.5e-258 896.0 945 51.6
Nitab4.5_0000818g0230 Nicotiana tabacum HOM05D004178 ORTHO05D005204 4.3e-255 885.2 933 52.1
Lj1C978G4 Lonicera japonica HOM05D004178 ORTHO05D005204 7.4e-255 884.4 939 52.9
VMungo1127G0288 Vigna mungo HOM05D004178 ORTHO05D005204 8.2e-254 880.9 932 52.7
CDE11G0310 Ceratophyllum demersum HOM05D004178 ORTHO05D005204 1.4e-253 880.2 933 52.1
Phvul.011G007300 Phaseolus vulgaris HOM05D004178 ORTHO05D005204 5.9e-252 874.8 932 52.7
Potri.003G107700 Populus trichocarpa HOM05D004178 ORTHO05D005204 1.3e-251 873.6 932 56.0
Sabra03G0074500 Salix brachista HOM05D004178 ORTHO05D005204 3.2e-250 869.0 1010 49.5
Aqoxy5G03870 Aquilegia oxysepala HOM05D004178 ORTHO05D005204 4.2e-250 868.6 935 52.2
Gorai.008G215500 Gossypium raimondii HOM05D004178 ORTHO05D005204 5.5e-250 868.2 935 52.0
Gohir.A12G197800 Gossypium hirsutum HOM05D004178 ORTHO05D005204 6.1e-249 864.8 935 51.7
MD07G1252300 Malus domestica HOM05D004178 ORTHO05D005204 7.9e-249 864.4 936 51.2
Eucgr.A02900 Eucalyptus grandis HOM05D004178 ORTHO05D005204 2.3e-248 862.8 933 52.2
FAN06G0596 Fragaria x ananassa HOM05D004178 ORTHO05D005204 1.5e-247 860.1 932 50.8
FAN06G2180 Fragaria x ananassa HOM05D004178 ORTHO05D005204 3.3e-247 859.0 932 50.8
Gohir.D12G200300 Gossypium hirsutum HOM05D004178 ORTHO05D005204 1.3e-246 857.1 935 51.6
Psat7g194520 Pisum sativum HOM05D004178 ORTHO05D005204 1.2e-244 850.5 932 50.5
FvH4_7g27291 Fragaria vesca HOM05D004178 ORTHO05D005204 1.5e-244 850.1 932 50.6
AL6G18000 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 2.0e-244 849.7 665 69.5
Haze_13892 Corylus avellana HOM05D004178 ORTHO05D005204 4.5e-244 848.6 966 51.2
PSO063G1916 Papaver somniferum HOM05D004178 ORTHO05D005204 1.0e-243 847.4 937 51.2
Duzib084G0917 Durio zibethinus HOM05D004178 ORTHO05D005204 2.9e-243 845.9 944 51.0
Medtr4g036760 Medicago truncatula HOM05D004178 ORTHO05D005204 8.5e-243 844.3 930 50.4
CANSAT56G2947 Cannabis sativa HOM05D004178 ORTHO05D005204 3.2e-242 842.4 933 50.7
vmacro06815 Vaccinium macrocarpon HOM05D004178 ORTHO05D005204 9.4e-242 840.9 1048 46.9
ATR0317G120 Amborella trichopoda HOM05D004178 ORTHO05D005204 1.2e-241 840.5 934 52.2
Glyma.09G229900 Glycine max HOM05D004178 ORTHO05D005204 6.1e-241 838.2 933 50.4
HanXRQChr01g0028141 Helianthus annuus HOM05D004178 ORTHO05D005204 4.8e-238 828.6 931 53.4
Lsat_1_v5_gn_9_51940 Lactuca sativa HOM05D004178 ORTHO05D005204 9.1e-237 824.3 933 53.1
Lalb_Chr19g0140351 Lupinus albus HOM05D004178 ORTHO05D005204 1.7e-235 820.1 933 48.4
Migut.F00486 Erythranthe guttata HOM05D004178 ORTHO05D005204 2.9e-235 819.3 945 49.2
PSO782G3243 Papaver somniferum HOM05D004178 ORTHO05D005204 6.5e-235 818.1 937 51.9
Lj3g0020737 Lotus japonicus HOM05D004178 ORTHO05D005204 2.5e-234 816.2 931 50.2
Rhsim03G0166000 Rhododendron simsii HOM05D004178 ORTHO05D005204 8.0e-233 811.2 1013 49.5
Cc02_g04400 Coffea canephora HOM05D004178 ORTHO05D005204 3.9e-232 808.9 933 48.1
ECA232G0935 Erigeron canadensis HOM05D004178 ORTHO05D005204 2.0e-231 806.6 933 52.0
MSTRG.8830 Avicennia marina HOM05D004178 ORTHO05D005204 5.7e-231 805.1 935 48.7
FAN10G0409 Fragaria x ananassa HOM05D004178 ORTHO05D005204 2.4e-229 799.7 934 48.7
TPR.G2991 Trifolium pratense HOM05D004178 ORTHO05D005204 2.0e-228 796.6 933 48.1
Prupe.2G275800 Prunus persica HOM05D004178 ORTHO05D005204 1.3e-227 793.9 873 51.3
Nitab4.5_0003647g0020 Nicotiana tabacum HOM05D004178 ORTHO05D005204 1.5e-226 790.4 937 48.0
Medtr4g061050 Medicago truncatula HOM05D004178 ORTHO05D005204 7.2e-226 788.1 934 47.2
DCAR_014619 Daucus carota HOM05D004178 ORTHO05D005204 9.4e-226 787.7 882 51.2
SGA_v2.0_scaffold2G01219 Striga asiatica HOM05D004178 ORTHO05D005204 1.5e-223 780.4 944 50.7
FAN03G3201 Fragaria x ananassa HOM05D004178 ORTHO05D005204 2.0e-223 780.0 1018 45.9
EL10Ac3g05856 Beta vulgaris HOM05D004178 ORTHO05D005204 4.4e-223 778.9 989 45.9
arahy.Tifrunner.gnm1.ann1.2YP1UN Arachis hypogaea HOM05D004178 ORTHO05D005204 8.2e-222 774.6 979 45.0
arahy.Tifrunner.gnm1.ann1.D3FWW6 Arachis hypogaea HOM05D004178 ORTHO05D005204 2.4e-221 773.1 979 44.8
Zm00001eb309160 Zea mays HOM05D004178 ORTHO05D005204 1.2e-220 770.8 943 46.1
TPR.G3678 Trifolium pratense HOM05D004178 ORTHO05D005204 2.0e-220 770.0 932 47.2
Sc19g0002080 Simmondsia chinensis HOM05D004178 ORTHO05D005204 8.3e-214 748.0 880 48.0
SalBow5G4122 Salvia bowleyana HOM05D004178 ORTHO05D005204 1.6e-204 717.2 935 45.3
BcaC03g13191 Brassica carinata HOM05D004178 ORTHO05D005204 1.7e-203 713.8 463 89.8
AUR62015432 Chenopodium quinoa HOM05D004178 ORTHO05D005204 8.6e-203 711.4 1045 42.1
Ah.07g207660 Amaranthus hybridus HOM05D004178 ORTHO05D005204 9.5e-194 681.4 934 44.6
SMO364G0410 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 1.6e-172 610.9 940 40.4
Pp3c11_11190 Physcomitrium patens HOM05D004178 ORTHO05D005204 2.7e-172 610.1 932 39.2
unitig_37.g12493 Utricularia gibba HOM05D004178 ORTHO05D005204 3.5e-172 609.8 905 43.4
HPP92_022323 Vanilla planifolia HOM05D004178 ORTHO05D005204 7.3e-170 602.1 705 48.1
HPP92_022331 Vanilla planifolia HOM05D004178 ORTHO05D005204 8.7e-163 578.6 652 49.5
Atru.chr1.752 Acer truncatum HOM05D004178 ORTHO05D005204 9.9e-159 565.1 621 50.9
COL.COLO4_14102 Corchorus olitorius HOM05D004178 ORTHO05D005204 2.1e-156 557.4 731 44.5
Mapoly0003s0057 Marchantia polymorpha HOM05D004178 ORTHO05D005204 3.4e-151 540.0 931 35.0
AagrBONN_evm.TU.Sc2ySwM_228.971 Anthoceros agrestis HOM05D004178 ORTHO05D005204 6.2e-145 519.2 944 34.6
Oeu021707.2 Olea europaea HOM05D004178 ORTHO05D005204 1.9e-138 497.7 741 41.8
PGSC0003DMG400014287 Solanum tuberosum HOM05D004178 ORTHO05D005204 4.3e-130 469.9 469 51.4
FAN03G2333 Fragaria x ananassa HOM05D004178 ORTHO05D005204 9.1e-128 462.2 666 43.7
AUR62002220 Chenopodium quinoa HOM05D004178 ORTHO05D005204 8.8e-115 419.1 666 40.1
FAN10G1085 Fragaria x ananassa HOM05D004178 ORTHO05D005204 8.5e-102 375.9 359 57.7
CAN.G515.10 Capsicum annuum HOM05D004178 ORTHO05D005204 2.1e-100 371.3 308 64.0
Atru.chr1.753 Acer truncatum HOM05D004178 ORTHO05D005204 5.5e-93 346.7 259 67.2
SEGI_03190 Sequoiadendron giganteum HOM05D004178 ORTHO05D005204 2.1e-92 344.7 344 53.2
Os09g0121050 Oryza sativa ssp. japonica HOM05D004178 ORTHO05D005204 1.6e-87 328.6 561 37.1
Hund11836 Selenicereus undatus HOM05D004178 ORTHO05D005204 5.6e-85 320.1 248 64.5
Cpa.g.sc121.6 Carica papaya HOM05D004178 ORTHO05D005204 5.0e-78 297.0 240 62.5
HPP92_027283 Vanilla planifolia HOM05D004178 ORTHO05D005204 2.1e-68 265.0 350 44.6
AL6G18010 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 2.8e-68 264.6 158 84.2
MCO11G708 Micromonas commoda HOM05D004178 ORTHO05D005204 1.1e-67 262.7 951 26.6
CBR_g34600 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-66 259.2 867 27.2
CAN.G515.9 Capsicum annuum HOM05D004178 ORTHO05D005204 8.3e-65 253.1 326 54.0
Ca_30729_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 4.3e-61 240.7 181 64.6
Oeu021706.1 Olea europaea HOM05D004178 ORTHO05D005204 2.1e-60 238.4 180 63.9
BolC2t06288H Brassica oleracea HOM05D004178 ORTHO05D005204 2.6e-58 231.5 127 94.5
Ah.02g120680 Amaranthus hybridus HOM05D004178 ORTHO05D005204 1.7e-57 228.8 389 38.3
Cpa.g.sc1936.1 Carica papaya HOM05D004178 ORTHO05D005204 1.5e-50 205.7 221 63.3
AL1G57860 Arabidopsis lyrata HOM05D004178 ORTHO05D005039 4.9e-49 200.7 168 67.3
PRCOL_00006025 Prasinoderma coloniale HOM05D004178 ORTHO05D005204 2.1e-47 195.3 981 25.4
Ca_02791_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 6.6e-46 190.3 141 61.7
Ca_27645_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 3.3e-45 188.0 134 69.4
Psat3g047440 Pisum sativum HOM05D004178 ORTHO05D005204 1.4e-43 182.6 143 62.9
Cpa.g.sc121.1 Carica papaya HOM05D004178 ORTHO05D005204 2.0e-42 178.7 115 78.3
SHI13977 Sapria himalayana HOM05D004178 ORTHO05D005204 1.3e-41 176.0 136 66.9
Cre12.g525050 Chlamydomonas reinhardtii HOM05D004178 ORTHO05D005204 9.3e-40 169.9 1026 23.4
Cfa025728 Carpinus fangiana HOM05D004178 ORTHO05D005204 1.3e-36 159.5 953 21.6
CARHR205510 Cardamine hirsuta HOM05D004178 ORTHO05D005204 1.5e-34 152.5 90 81.1
AUR62042657 Chenopodium quinoa HOM05D004178 ORTHO05D005204 1.0e-33 149.8 165 53.9
Haze_26632 Corylus avellana HOM05D004178 ORTHO05D005204 2.2e-33 148.7 997 21.7
GSVIVG01014042001 Vitis vinifera HOM05D004178 ORTHO05D005204 2.7e-31 141.7 134 56.7
Glyma.12G006400 Glycine max HOM05D004178 ORTHO05D005204 7.9e-31 140.2 89 74.2
Ca_02789_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 3.8e-25 121.3 74 73.0
GSVIVG01014044001 Vitis vinifera HOM05D004178 ORTHO05D005204 1.3e-20 106.3 66 80.3
SMO117G0047 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 4.8e-20 104.4 144 37.5
Sp7g06190 Schrenkiella parvula HOM05D004178 ORTHO05D005204 4.1e-19 101.3 189 34.9
Ca_02792_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 2.9e-17 95.1 218 32.6
Cpa.g.sc121.4 Carica papaya HOM05D004178 ORTHO05D005204 1.9e-16 92.4 98 53.1
SMO137G0368 Selaginella moellendorffii HOM05D027672 ORTHO05D005204 7.2e-16 90.5 123 33.3
GSVIVG01014041001 Vitis vinifera HOM05D004178 ORTHO05D005204 3.9e-14 84.7 92 50.0
SMO302G0053 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 4.3e-13 81.3 175 33.1
AUR62042656 Chenopodium quinoa HOM05D004178 ORTHO05D005204 9.7e-13 80.1 56 73.2
SMO202G0076 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 1.2e-10 73.2 121 36.4
Cre12.g525100 Chlamydomonas reinhardtii HOM05D004178 ORTHO05D005204 1.3e-09 69.7 643 20.4
QL07p015796 Quercus lobata HOM05D004178 ORTHO05D005204 3.6e-07 61.6 64 50.0
PGSC0003DMG403030108 Solanum tuberosum HOM05D004178 ORTHO05D005204 1.8e-06 59.3 74 45.9
HanXRQChr01g0007751 Helianthus annuus HOM05D005087 ORTHO05D006427 3.9e-06 58.2 970 19.3


User provided reference genes

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