Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 9.9e-284 979.5 532 100.0
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 2.2e-251 872.1 542 91.1
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 1.9e-250 869.0 544 89.5
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 5.5e-250 867.5 542 88.4
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 3.1e-245 851.7 550 88.7
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 1.2e-244 849.7 537 90.1
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 1.8e-240 835.9 542 87.1
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 1.1e-239 833.2 542 84.7
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 7.4e-239 830.5 536 86.6
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 2.8e-238 828.6 535 86.5
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 3.1e-237 825.1 425 94.1
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 1.2e-236 823.2 531 89.3
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 1.3e-235 819.7 538 85.1
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 1.0e-232 810.1 542 85.2
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 3.1e-229 798.5 547 83.4
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 2.0e-228 795.8 547 83.2
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 7.2e-218 760.8 443 85.1
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 3.9e-216 755.0 408 91.2
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 1.7e-211 739.6 530 76.2
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 9.2e-189 664.1 434 74.2
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 1.7e-187 659.8 421 74.6
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 1.1e-186 657.1 432 74.1
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 1.2e-185 653.7 415 75.9
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 3.6e-185 652.1 422 73.0
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 3.6e-185 652.1 428 73.4
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 4.7e-185 651.7 437 72.8
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 1.8e-184 649.8 419 74.9
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 1.8e-184 649.8 432 73.4
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 5.2e-184 648.3 423 72.8
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 5.2e-184 648.3 423 72.8
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 5.2e-184 648.3 448 72.1
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 2.6e-183 646.0 444 72.3
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 2.6e-183 646.0 424 73.3
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 1.3e-182 643.7 435 71.5
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 2.2e-182 642.9 422 74.4
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 4.9e-182 641.7 426 72.5
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 6.4e-182 641.3 420 73.8
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 8.3e-182 641.0 421 73.6
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 8.3e-182 641.0 429 72.5
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 8.3e-182 641.0 425 73.2
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 1.1e-181 640.6 456 70.2
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 1.4e-181 640.2 447 70.0
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 2.4e-181 639.4 447 69.8
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 3.2e-181 639.0 427 72.1
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 3.2e-181 639.0 424 73.3
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 5.4e-181 638.3 435 71.7
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 7.0e-181 637.9 423 72.6
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 7.0e-181 637.9 424 72.2
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.2e-180 637.1 425 72.9
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.7e-180 636.0 425 72.7
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 2.7e-180 636.0 425 72.9
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 2.7e-180 636.0 427 73.1
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 6.0e-180 634.8 418 73.4
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 7.8e-180 634.4 422 74.4
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 1.0e-179 634.0 415 73.7
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 1.3e-179 633.6 446 71.1
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 1.7e-179 633.3 418 72.0
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 1.7e-179 633.3 418 73.2
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.3e-179 632.9 424 72.6
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 3.9e-179 632.1 464 67.9
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 1.1e-178 630.6 432 72.7
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 1.1e-178 630.6 449 70.2
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 1.9e-178 629.8 424 71.7
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 3.6e-177 625.5 440 69.5
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 3.6e-177 625.5 428 69.9
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 4.7e-177 625.2 457 68.7
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 1.1e-176 624.0 448 69.6
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 1.1e-176 624.0 448 69.6
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 1.4e-176 623.6 423 70.9
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 1.5e-175 620.2 427 71.9
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 5.8e-175 618.2 427 71.7
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 2.2e-174 616.3 424 71.7
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 2.2e-174 616.3 477 65.4
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 4.9e-174 615.1 419 71.6
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 4.9e-174 615.1 453 67.3
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 8.3e-174 614.4 424 71.7
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 8.3e-174 614.4 430 70.7
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 2.4e-173 612.8 459 66.2
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 3.2e-173 612.5 446 68.2
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 1.2e-172 610.5 423 70.4
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 6.0e-172 608.2 425 71.3
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 9.5e-170 600.9 426 68.8
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 2.1e-169 599.7 417 70.5
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 2.8e-169 599.4 423 69.7
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 1.8e-168 596.7 422 71.1
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 1.5e-167 593.6 349 79.7
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 9.9e-167 590.9 464 63.8
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 3.0e-163 579.3 421 67.5
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 4.7e-161 572.0 445 63.4
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 1.1e-160 570.9 416 67.8
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.8e-160 570.1 450 64.2
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 1.2e-159 567.4 424 66.3
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 5.8e-159 565.1 434 65.2
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 9.9e-159 564.3 427 65.3
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 2.9e-158 562.8 459 61.4
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 1.6e-156 557.0 424 65.1
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 3.3e-154 549.3 427 63.9
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.3e-153 547.4 388 69.3
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 2.8e-153 546.2 383 68.9
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.3e-150 537.3 421 62.7
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 3.8e-150 535.8 381 68.8
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 1.2e-148 530.8 400 64.8
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 3.6e-145 519.2 314 76.8
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 6.4e-142 508.4 327 73.1
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 8.4e-142 508.1 401 63.8
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 3.0e-139 499.6 235 100.0
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 8.7e-139 498.0 382 65.4
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 6.9e-136 488.4 467 57.0
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 1.9e-130 470.3 344 66.6
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 1.6e-121 440.7 323 67.5
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 2.2e-121 440.3 293 70.6
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 1.0e-118 431.4 337 64.1
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 1.0e-115 421.4 413 54.0
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 5.1e-115 419.1 450 50.7
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 2.0e-111 407.1 312 66.3
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 2.2e-110 403.7 429 54.3
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 3.6e-108 396.4 354 55.1
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 5.3e-104 382.5 326 61.7
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 4.5e-103 379.4 324 54.0
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 2.9e-102 376.7 306 60.5
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 1.4e-91 341.3 190 80.5
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 3.1e-88 330.1 429 44.5
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 2.3e-78 297.4 224 65.2
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 2.3e-75 287.3 259 57.1
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 2.1e-47 194.5 115 79.1
BolC1t01095H Brassica oleracea HOM05D005140 ORTHO05D006288 1.5e-45 188.3 151 98.0
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 3.3e-45 187.2 260 46.9
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 7.3e-45 186.0 181 60.2
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 8.1e-44 182.6 135 66.7
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 4.3e-37 160.2 290 35.9
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 1.2e-31 142.1 156 55.1
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 1.4e-27 128.6 271 34.7
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 1.8e-27 128.3 77 75.3
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 2.9e-25 120.9 108 63.0
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 6.4e-25 119.8 79 70.9
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 1.3e-20 105.5 205 36.6
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 4.0e-19 100.5 80 61.2
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 2.5e-13 81.3 52 65.4
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 4.2e-08 63.9 29 86.2
Psat6g107920 Pisum sativum HOM05D032184 ORTHO05D330502 5.1e-06 57.0 28 89.3


User provided reference genes

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