Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1369.0 710 100.0
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1360.1 710 99.6
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1359.7 710 99.6
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1359.7 710 99.6
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1359.0 710 99.4
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1355.1 710 99.3
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1345.1 710 98.2
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1316.2 710 96.3
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1307.0 710 95.5
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1299.6 710 94.8
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1274.2 710 93.9
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 0.0e+00 1240.3 749 88.0
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1211.8 697 89.2
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1188.7 702 85.9
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1171.4 695 87.5
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1171.4 701 83.6
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1169.1 708 83.6
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1168.3 686 85.6
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1161.4 700 83.6
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1161.4 686 85.4
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1160.6 698 84.0
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1160.6 698 84.0
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1159.8 708 83.5
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1159.4 696 84.8
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1159.4 698 84.5
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1158.3 698 84.1
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1157.5 706 82.9
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1156.4 689 84.2
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1156.0 686 85.6
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1156.0 686 85.6
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1156.0 686 85.6
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1156.0 686 85.1
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1154.8 686 85.0
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1154.8 700 83.3
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1154.4 686 85.0
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1153.7 697 85.8
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1153.3 700 83.1
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1153.3 687 85.3
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1151.3 701 83.0
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1150.6 698 83.4
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1150.2 686 84.7
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1146.3 698 83.4
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1146.0 689 84.3
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1146.0 701 83.2
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1144.0 700 82.9
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1141.7 696 83.5
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1141.7 687 83.8
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1141.3 701 81.9
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1140.2 697 83.4
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1139.4 705 82.4
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1138.6 746 81.4
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1138.3 700 81.9
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1136.3 696 81.8
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1136.3 697 83.5
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1135.9 701 82.5
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1132.9 706 82.0
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1132.9 690 83.2
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1132.5 695 82.2
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1130.9 690 83.0
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1129.8 698 82.1
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1125.5 732 79.8
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1125.2 728 79.1
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1122.8 704 81.5
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1122.5 672 83.9
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1120.5 687 83.3
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1119.8 706 80.2
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1119.8 710 80.0
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1119.0 712 80.6
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1118.6 686 82.8
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1118.6 688 82.6
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1118.2 703 81.2
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1115.1 698 80.4
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1114.8 692 81.6
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1114.8 702 80.3
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1114.0 702 80.3
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1112.4 685 82.6
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1112.1 705 80.4
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1111.3 699 81.0
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1109.7 712 79.6
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1107.8 734 76.8
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1105.5 723 78.7
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1102.4 686 82.4
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1099.7 695 80.3
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1098.6 705 79.7
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1098.2 685 80.9
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1097.4 687 81.2
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1095.5 632 91.5
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1092.0 685 80.1
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1092.0 707 79.5
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1091.3 669 81.8
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1090.5 686 79.9
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1082.0 731 76.1
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 4.4e-311 1070.8 765 73.1
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 6.9e-309 1063.5 700 76.0
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 5.9e-308 1060.4 705 77.9
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 3.8e-307 1057.7 670 79.4
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 2.0e-303 1045.4 696 75.1
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 2.0e-303 1045.4 731 75.0
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 9.1e-301 1036.6 667 80.1
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 5.7e-295 1017.3 707 74.0
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 4.0e-280 968.0 591 81.7
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 7.5e-279 963.8 631 78.9
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 2.8e-278 961.8 690 69.6
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 2.8e-278 961.8 690 69.6
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 4.4e-271 937.9 705 65.8
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 6.3e-270 934.1 691 68.2
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 7.3e-266 920.6 584 77.9
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 2.0e-263 912.5 693 66.5
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 1.9e-258 896.0 684 69.9
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 4.7e-257 891.3 554 80.7
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 1.7e-254 882.9 566 76.5
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 1.6e-252 876.3 589 75.4
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 2.0e-247 859.4 511 85.1
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 3.9e-243 845.1 676 67.0
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 5.2e-232 808.1 492 82.9
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 4.8e-225 785.0 682 58.1
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 2.7e-212 742.7 676 55.2
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 1.4e-200 703.7 441 77.6
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.7e-190 670.2 465 76.6
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.4e-155 554.3 328 82.0
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 7.0e-152 542.0 713 42.8
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 5.6e-141 505.8 758 38.0
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 8.9e-131 471.9 280 83.2
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.6e-124 451.1 270 80.7
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 1.7e-121 441.0 269 81.4
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 5.1e-118 429.5 369 60.7
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 5.8e-114 416.0 748 36.2
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.5e-109 400.6 236 83.5
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 3.6e-108 396.7 253 76.7
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.4e-107 394.8 233 81.5
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.1e-101 375.2 260 76.2
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 2.1e-95 354.4 253 73.5
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.1e-77 295.4 182 76.4
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 1.0e-73 282.3 215 68.4
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 2.2e-73 281.2 192 78.6
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 5.1e-70 270.0 148 85.1
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.8e-67 261.5 195 68.7
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.6e-58 231.9 192 68.8
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 1.7e-57 228.4 155 65.2
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 8.0e-55 219.5 167 68.3
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 4.4e-53 213.8 156 68.6
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 7.0e-51 206.5 181 66.3
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 7.0e-51 206.5 215 56.7
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 7.7e-50 203.0 489 29.0
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 8.3e-44 183.0 120 80.0
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 5.4e-43 180.3 115 81.7
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 4.2e-40 170.6 104 79.8
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.2e-39 169.1 111 80.2
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 4.0e-38 164.1 111 74.8
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 6.3e-36 156.8 129 72.1
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 4.5e-34 150.6 96 79.2
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.3e-33 149.1 140 65.0
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 4.3e-32 144.1 96 76.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 4.3e-32 144.1 96 76.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 4.3e-24 117.5 99 63.6
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 1.5e-21 109.0 74 74.3
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 5.8e-21 107.1 63 79.4
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 3.7e-20 104.4 69 71.0
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 1.4e-19 102.4 77 68.8
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 1.9e-19 102.1 59 83.1
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.4e-19 101.7 70 72.9
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.1e-19 100.9 57 84.2
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.0e-17 94.7 103 51.5
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 2.3e-14 85.1 65 67.7
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 3.2e-11 74.7 60 63.3
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 4.1e-11 74.3 78 48.7
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 1.5e-08 65.9 40 80.0
BcaB03g14888 Brassica carinata HOM05D005563 ORTHO05D006667 2.5e-08 65.1 66 59.1
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 1.4e-06 59.3 48 60.4
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.4e-06 58.5 55 54.5


User provided reference genes

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