Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t54836H Brassica oleracea HOM05D004445 ORTHO05D021776 4.8e-49 197.6 104 100.0
C07p33090 Brassica napus HOM05D004445 ORTHO05D021776 2.0e-47 192.2 104 97.1
BcaC09g48456 Brassica carinata HOM05D004445 ORTHO05D021776 2.0e-23 112.5 113 65.5
BolC1t04912H Brassica oleracea HOM05D004445 ORTHO05D021776 2.2e-17 92.4 67 74.6
C01p49570 Brassica napus HOM05D004445 ORTHO05D021776 1.7e-14 82.8 60 73.3
Aa31LG5G14230 Aethionema arabicum HOM05D000398 ORTHO05D002677 8.2e-09 63.9 67 56.7
Sc13g0007390 Simmondsia chinensis HOM05D004445 ORTHO05D005578 8.2e-09 63.9 63 60.3
BcaC05g28514 Brassica carinata HOM05D000559 ORTHO05D021776 2.4e-08 62.4 35 91.4
BcaC07g40509 Brassica carinata HOM05D033546 ORTHO05D032394 2.4e-08 62.4 44 75.0
Cre03.g151750 Chlamydomonas reinhardtii HOM05D004445 ORTHO05D005578 2.4e-08 62.4 46 73.9
FvH4_4g16190 Fragaria vesca HOM05D004445 ORTHO05D005578 2.4e-08 62.4 47 72.3
FvH4_1g00440 Fragaria vesca HOM05D004445 ORTHO05D005578 3.1e-08 62.0 64 56.2
FAN28G1098 Fragaria x ananassa HOM05D004445 ORTHO05D005578 3.1e-08 62.0 64 56.2
Nn7g38180 Nelumbo nucifera HOM05D004445 ORTHO05D005578 4.1e-08 61.6 58 60.3
Atru.chr3.1946 Acer truncatum HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Actinidia11436 Actinidia chinensis HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Aa31LG10G14060 Aethionema arabicum HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Aa31LG1G25520 Aethionema arabicum HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Ah.07g203020 Amaranthus hybridus HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
ATR0171G021 Amborella trichopoda HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
AagrBONN_evm.TU.Sc2ySwM_228.4655 Anthoceros agrestis HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Aqoxy5G03981 Aquilegia oxysepala HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
arahy.Tifrunner.gnm1.ann1.H8LWLB Arachis hypogaea HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
arahy.Tifrunner.gnm1.ann1.I91R84 Arachis hypogaea HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
arahy.Tifrunner.gnm1.ann1.PL7ZZZ Arachis hypogaea HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
arahy.Tifrunner.gnm1.ann1.Y7N0XK Arachis hypogaea HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
EL10Ac3g06124 Beta vulgaris HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
BcaB02g08208 Brassica carinata HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
BcaC02g10088 Brassica carinata HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
BcaC08g45011 Brassica carinata HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
A04p02010 Brassica napus HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
A07p24840 Brassica napus HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
A09p52090 Brassica napus HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
C04p32900 Brassica napus HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
C06p26430 Brassica napus HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
BolC4t24853H Brassica oleracea HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
BolC6t37806H Brassica oleracea HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
BraA04t15926Z Brassica rapa HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
BraA07t30128Z Brassica rapa HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
BraA09t40641Z Brassica rapa HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
CSS0046632 Camellia sinensis var. sinensis HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
CANSAT54G1898 Cannabis sativa HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
CAN.G960.57 Capsicum annuum HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Cpa.g.sc601.1 Carica papaya HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Cfa008488 Carpinus fangiana HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
CiPaw.01G199100 Carya illinoinensis HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
CiPaw.02G123500 Carya illinoinensis HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
CDE02G4113 Ceratophyllum demersum HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
CDE06G1144 Ceratophyllum demersum HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
CBR_g23546 Chara braunii HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
AUR62002431 Chenopodium quinoa HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
AUR62023757 Chenopodium quinoa HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Ca_03838_v3 Cicer arietinum L. HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
ClCG11G000770 Citrullus lanatus HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Ciclev10023071m.g Citrus clementina HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Cc03_g15060 Coffea canephora HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
COL.COLO4_03308 Corchorus olitorius HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
COL.COLO4_25170 Corchorus olitorius HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Haze_11169 Corylus avellana HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
MELO3C022586.2 Cucumis melo HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
CsaV3_5G012480 Cucumis sativus L. HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
DCAR_027508 Daucus carota HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Dinv18304 Davidia involucrata HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Duzib151G0738 Durio zibethinus HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Duzib268G1882 Durio zibethinus HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
ECA238G2251 Erigeron canadensis HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Migut.F00861 Erythranthe guttata HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Eucgr.G01590 Eucalyptus grandis HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Eucgr.G01594 Eucalyptus grandis HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Eucgr.G01595 Eucalyptus grandis HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Eucgr.L00030 Eucalyptus grandis HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Eucgr.L00039 Eucalyptus grandis HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Thhalv10006338m.g Eutrema salsugineum HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
FAN23G0186 Fragaria x ananassa HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
FAN26G2197 Fragaria x ananassa HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Glyma.09G262700 Glycine max HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Glyma.18G229600 Glycine max HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Gohir.A02G007400 Gossypium hirsutum HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Gohir.A09G213620 Gossypium hirsutum HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Gohir.D02G007200 Gossypium hirsutum HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Gohir.D09G212900 Gossypium hirsutum HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Gorai.005G008600 Gossypium raimondii HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Gorai.006G232700 Gossypium raimondii HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
HanXRQChr12g0372591 Helianthus annuus HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
HanXRQChr14g0449021 Helianthus annuus HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Hma1.2p1_0108F.1_g051900 Hydrangea macrophylla HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Lj3g0027067 Lotus japonicus HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Lalb_Chr08g0242021 Lupinus albus HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Lalb_Chr13g0291081 Lupinus albus HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
MD02G1003600 Malus domestica HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
MD15G1146900 Malus domestica HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Manes.05G137535 Manihot esculenta HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Manes.12G001100 Manihot esculenta HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Mapoly0124s0040 Marchantia polymorpha HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Medtr4g080300 Medicago truncatula HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
MCO16G126 Micromonas commoda HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Nitab4.5_0000812g0140 Nicotiana tabacum HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Nitab4.5_0006279g0040 Nicotiana tabacum HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Oeu022452.1 Olea europaea HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Os02g0510100 Oryza sativa ssp. japonica HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Os04g0388900 Oryza sativa ssp. japonica HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
PSO170G5655 Papaver somniferum HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
PSO357G0486 Papaver somniferum HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Peaxi162Scf00003g04837 Petunia axillaris HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Peaxi162Scf00483g00211 Petunia axillaris HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Phvul.008G068400 Phaseolus vulgaris HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Pp3c22_1090 Physcomitrium patens HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Psat7g164240 Pisum sativum HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Potri.008G078400 Populus trichocarpa HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Potri.010G178700 Populus trichocarpa HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Prupe.7G267700 Prunus persica HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
PGR042G3106 Punica granatum HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
QL07p046700 Quercus lobata HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Rhsim02G0086200 Rhododendron simsii HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
RcHm_v2.0_Chr2g0084951 Rosa chinensis HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
SalBow3G0834 Salvia bowleyana HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
SalBow4G2087 Salvia bowleyana HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Sp4g25890 Schrenkiella parvula HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Sp5g03330 Schrenkiella parvula HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Sed0015212 Sechium edule HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
SMO197G0107 Selaginella moellendorffii HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Solyc10g078450.2 Solanum lycopersicum HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Sopen10g029110 Solanum pennellii HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
PGSC0003DMG400008371 Solanum tuberosum HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
THA.LOC104802338 Tarenaya hassleriana HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
THA.LOC104805002 Tarenaya hassleriana HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Thecc.04G161800 Theobroma cacao HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
TPR.G30476 Trifolium pratense HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
TWI15G0001 Tripterygium wilfordii HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
TWI15G1072 Tripterygium wilfordii HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
TWI60G1208 Tripterygium wilfordii HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
TAR636G2830 Trochodendron aralioides HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
unitig_699.g19769 Utricularia gibba HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
HPP92_007009 Vanilla planifolia HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
GSVIVG01038197001 Vitis vinifera HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Zm00001eb421160 Zea mays HOM05D004445 ORTHO05D005578 5.3e-08 61.2 46 71.7
Carub.0005s2653 Capsella rubella HOM05D004445 ORTHO05D005578 6.9e-08 60.8 46 69.6
Pp3c18_1280 Physcomitrium patens HOM05D004445 ORTHO05D005578 6.9e-08 60.8 46 69.6
Carub.0004s2635 Capsella rubella HOM05D004445 ORTHO05D005578 9.1e-08 60.5 47 68.1
TAR365G0334 Trochodendron aralioides HOM05D004445 ORTHO05D005578 9.1e-08 60.5 88 46.6
C05p63230 Brassica napus HOM05D000398 ORTHO05D002677 1.2e-07 60.1 36 91.7
BolC5t34985H Brassica oleracea HOM05D000398 ORTHO05D002677 1.2e-07 60.1 36 91.7
Thhalv10020329m.g Eutrema salsugineum HOM05D000398 ORTHO05D002677 1.2e-07 60.1 36 91.7
Sp3g02690 Schrenkiella parvula HOM05D000398 ORTHO05D002677 1.2e-07 60.1 36 91.7
AL4G42690 Arabidopsis lyrata HOM05D004445 ORTHO05D005578 1.5e-07 59.7 46 69.6
AL5G41860 Arabidopsis lyrata HOM05D004445 ORTHO05D005578 1.5e-07 59.7 46 69.6
BcaC09g47758 Brassica carinata HOM05D000398 ORTHO05D002677 1.5e-07 59.7 36 91.7
BolC1t05813H Brassica oleracea HOM05D000398 ORTHO05D002677 1.5e-07 59.7 36 91.7
Eucgr.D00038 Eucalyptus grandis HOM05D004445 ORTHO05D005578 2.0e-07 59.3 46 69.6
AL3G13520 Arabidopsis lyrata HOM05D000398 ORTHO05D002677 3.4e-07 58.5 36 88.9
AT3G03720 Arabidopsis thaliana HOM05D000398 ORTHO05D002677 3.4e-07 58.5 36 88.9
BcaC05g30254 Brassica carinata HOM05D000398 ORTHO05D002677 3.4e-07 58.5 36 88.9
CARHR077780 Cardamine hirsuta HOM05D000398 ORTHO05D002677 3.4e-07 58.5 36 88.9
CARHR170150 Cardamine hirsuta HOM05D004445 ORTHO05D005578 3.4e-07 58.5 46 69.6
Lsat_1_v5_gn_2_85181 Lactuca sativa HOM05D004445 ORTHO05D005578 3.4e-07 58.5 32 87.5
Rhsim02G0086900 Rhododendron simsii HOM05D004445 ORTHO05D005578 3.4e-07 58.5 42 76.2
Sabra08G0058200 Salix brachista HOM05D004445 ORTHO05D005578 3.4e-07 58.5 32 87.5
Ah.13g073310 Amaranthus hybridus HOM05D004445 ORTHO05D005578 4.5e-07 58.2 44 70.5
BcaC05g29910 Brassica carinata HOM05D000398 ORTHO05D002677 4.5e-07 58.2 36 88.9
A05p43650 Brassica napus HOM05D000398 ORTHO05D002677 4.5e-07 58.2 36 88.9
BraA05t23103Z Brassica rapa HOM05D000398 ORTHO05D002677 4.5e-07 58.2 36 88.9
CSS0006315 Camellia sinensis var. sinensis HOM05D004445 ORTHO05D005578 4.5e-07 58.2 30 93.3
Sabra10G0137100 Salix brachista HOM05D004445 ORTHO05D005578 4.5e-07 58.2 30 93.3
SGA_v2.0_scaffold292G47391 Striga asiatica HOM05D004445 ORTHO05D005578 4.5e-07 58.2 34 85.3
THA.LOC104802882 Tarenaya hassleriana HOM05D000398 ORTHO05D002677 4.5e-07 58.2 36 86.1
vmacro15702 Vaccinium macrocarpon HOM05D004445 ORTHO05D005578 4.5e-07 58.2 30 93.3
AT3G59810 Arabidopsis thaliana HOM05D004445 ORTHO05D005578 5.9e-07 57.8 46 67.4
AT2G43810 Arabidopsis thaliana HOM05D004445 ORTHO05D005578 7.7e-07 57.4 46 67.4
Carub.0003s0288 Capsella rubella HOM05D000398 ORTHO05D002677 1.0e-06 57.0 36 86.1
CiPaw.09G167400 Carya illinoinensis HOM05D000398 ORTHO05D002677 1.7e-06 56.2 66 51.5
Gohir.A11G229900 Gossypium hirsutum HOM05D000398 ORTHO05D002677 2.2e-06 55.8 36 80.6
Gohir.D11G241700 Gossypium hirsutum HOM05D000398 ORTHO05D002677 2.2e-06 55.8 36 80.6
Gorai.007G255800 Gossypium raimondii HOM05D000398 ORTHO05D002677 2.2e-06 55.8 36 80.6
Rhsim03G0050000 Rhododendron simsii HOM05D000398 ORTHO05D002677 2.2e-06 55.8 58 63.8
PRCOL_00006325 Prasinoderma coloniale HOM05D004445 ORTHO05D005578 2.9e-06 55.5 42 64.3
TPR.G40363 Trifolium pratense HOM05D004445 ORTHO05D005578 2.9e-06 55.5 29 93.1
COL.COLO4_28631 Corchorus olitorius HOM05D000398 ORTHO05D002677 6.5e-06 54.3 36 77.8
MELO3C008851.2 Cucumis melo HOM05D000398 ORTHO05D002677 6.5e-06 54.3 35 82.9
CsaV3_4G011960 Cucumis sativus L. HOM05D000398 ORTHO05D002677 6.5e-06 54.3 35 82.9
Duzib177G0605 Durio zibethinus HOM05D000398 ORTHO05D002677 6.5e-06 54.3 36 77.8
Eucgr.G01588 Eucalyptus grandis HOM05D004445 ORTHO05D005578 6.5e-06 54.3 43 69.8
TWI34G1446 Tripterygium wilfordii HOM05D000398 ORTHO05D002677 6.5e-06 54.3 65 52.3
Cpa.g.sc161.30 Carica papaya HOM05D000398 ORTHO05D002677 8.5e-06 53.9 63 50.8


User provided reference genes

Program Settings