Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1369.0 709 100.0
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1364.7 709 99.7
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1364.7 709 99.7
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1364.0 709 99.6
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1360.9 710 99.6
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1357.8 709 99.2
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1350.1 709 98.3
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1321.6 709 96.5
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1312.4 709 95.6
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1302.7 709 94.6
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1277.3 709 93.8
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 0.0e+00 1243.4 748 87.8
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1214.9 696 89.1
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1191.8 701 85.7
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1176.0 707 83.7
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1174.5 694 87.3
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1174.5 700 83.4
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1171.0 685 85.4
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1166.8 707 83.6
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1166.4 699 83.7
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1164.1 685 85.3
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1163.3 697 83.8
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1163.3 697 83.8
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1163.3 688 84.3
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1162.5 695 84.6
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1161.0 697 83.9
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1160.6 705 82.7
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1159.8 699 83.3
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1159.8 699 83.4
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1159.1 696 85.9
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1158.7 685 85.4
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1158.7 685 85.4
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1158.7 685 85.4
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1158.7 685 85.0
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1157.5 685 84.8
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1157.1 685 84.8
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1156.0 686 85.1
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1156.0 698 84.1
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1154.4 700 82.9
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1153.3 697 83.2
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1152.9 685 84.5
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1149.4 697 83.2
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1149.0 699 83.0
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1149.0 688 84.2
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1148.7 700 83.0
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1144.8 695 83.3
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1144.8 704 82.5
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1144.4 686 83.7
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1144.4 700 81.7
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1143.3 696 83.2
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1141.7 695 81.9
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1140.9 699 81.7
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1139.8 705 82.1
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1139.4 696 83.3
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1139.0 700 82.3
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1137.5 746 81.2
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1135.9 689 83.0
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1135.6 694 82.0
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1134.0 689 82.9
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1132.9 697 81.9
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1128.2 731 79.6
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1127.9 703 81.7
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1126.7 705 80.3
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1126.3 728 79.1
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1125.2 671 83.8
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1123.2 686 83.1
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1122.1 711 80.5
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1121.3 685 82.6
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1121.3 687 82.4
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1121.3 702 81.1
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1119.8 710 79.9
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1117.8 697 80.2
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1117.8 691 81.5
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1117.8 701 80.2
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1117.1 701 80.2
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1115.1 704 80.3
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1115.1 684 82.5
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1114.8 733 76.9
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1114.4 698 80.8
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1112.8 711 79.5
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1108.6 722 78.5
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1105.5 704 79.8
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1105.1 685 82.2
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1102.8 694 80.1
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1102.4 631 91.6
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1100.9 684 80.7
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1100.1 686 81.0
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1097.0 685 80.0
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1094.7 684 80.0
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1094.7 706 79.3
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1094.0 668 81.6
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1084.7 730 75.9
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 4.9e-312 1073.9 764 72.9
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 8.1e-310 1066.6 699 76.0
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 6.9e-309 1063.5 704 77.7
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 3.4e-308 1061.2 669 79.5
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 9.3e-306 1053.1 695 75.4
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 2.3e-304 1048.5 730 74.8
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.1e-301 1039.6 666 79.9
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 3.9e-296 1021.1 706 73.9
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 3.0e-280 968.4 689 69.7
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 3.0e-280 968.4 689 69.7
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 1.5e-279 966.1 591 81.4
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.8e-278 961.8 631 78.6
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 3.6e-273 944.9 704 65.9
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 6.3e-270 934.1 691 68.0
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 7.2e-266 920.6 692 66.8
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 9.5e-266 920.2 584 77.7
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 2.5e-258 895.6 683 69.8
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 8.0e-257 890.6 554 80.5
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 2.9e-254 882.1 566 76.3
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 3.5e-252 875.2 589 75.2
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 1.4e-248 863.2 510 85.1
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 3.2e-245 852.0 675 67.1
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 3.6e-233 812.0 491 82.9
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 2.5e-226 789.3 681 58.1
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 1.9e-213 746.5 675 55.3
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 3.1e-200 702.6 441 77.3
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.2e-191 674.1 464 76.5
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 3.0e-155 553.1 328 81.7
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 4.8e-153 545.8 712 42.7
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 3.9e-142 509.6 757 37.9
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 2.0e-130 470.7 280 82.9
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 3.6e-124 449.9 270 80.4
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 2.9e-121 440.3 269 81.0
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 2.4e-120 437.2 368 61.1
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 1.4e-115 421.4 747 36.3
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 5.6e-109 399.4 236 83.1
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 6.2e-108 396.0 253 76.3
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 3.1e-107 393.7 233 81.1
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 7.9e-103 379.0 259 76.1
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 9.9e-98 362.1 252 74.2
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.5e-77 294.3 182 75.8
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 1.7e-73 281.6 215 67.9
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 3.8e-73 280.4 192 78.1
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 5.1e-70 270.0 148 85.1
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 3.1e-67 260.8 195 68.2
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 2.6e-58 231.1 192 68.2
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 3.8e-57 227.3 155 64.5
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.4e-54 218.8 167 67.7
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 4.4e-53 213.8 214 57.5
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 9.7e-53 212.6 156 67.9
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 4.8e-52 210.3 180 66.1
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 7.7e-50 203.0 489 29.0
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 4.4e-45 187.2 119 79.8
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 3.7e-44 184.1 114 81.6
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 4.2e-40 170.6 104 79.8
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 2.7e-39 167.9 107 81.3
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 4.0e-38 164.1 111 74.8
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 2.6e-37 161.4 128 72.7
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 4.5e-34 150.6 96 79.2
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 7.7e-34 149.8 139 65.5
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 4.3e-32 144.1 96 76.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 4.3e-32 144.1 96 76.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 7.3e-24 116.7 99 62.6
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 4.4e-21 107.5 73 74.0
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 5.8e-21 107.1 63 79.4
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 3.7e-20 104.4 69 71.0
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 1.4e-19 102.4 77 68.8
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 1.9e-19 102.1 59 83.1
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.1e-19 100.9 57 84.2
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 7.0e-19 100.1 69 72.5
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 6.6e-17 93.6 103 50.5
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 2.3e-14 85.1 65 67.7
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 3.2e-11 74.7 60 63.3
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 4.1e-11 74.3 78 48.7
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 1.5e-08 65.9 40 80.0
BcaB03g14888 Brassica carinata HOM05D005563 ORTHO05D006667 2.5e-08 65.1 66 59.1
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 1.4e-06 59.3 48 60.4
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.3e-06 58.5 55 54.5


User provided reference genes

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