Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 2.3e-230 802.0 435 100.0
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 1.0e-225 786.6 436 98.9
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 1.3e-161 573.5 409 81.4
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 1.2e-159 567.0 410 81.0
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 6.7e-137 491.5 433 71.1
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 1.5e-136 490.3 432 71.1
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 9.6e-136 487.6 430 71.2
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 9.6e-136 487.6 430 71.2
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 4.8e-135 485.3 437 70.3
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 1.1e-134 484.2 437 70.0
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 1.1e-131 474.2 403 73.4
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 1.1e-123 447.6 449 64.8
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 9.3e-123 444.5 439 65.6
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 6.1e-122 441.8 438 66.4
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 1.0e-121 441.0 449 64.6
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 3.4e-117 426.0 415 66.0
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 7.7e-117 424.9 450 62.9
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 2.6e-104 383.3 415 60.7
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 9.7e-96 354.8 454 52.9
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 1.3e-95 354.4 464 52.8
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 1.6e-93 347.4 478 51.7
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 3.5e-93 346.3 462 51.7
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.9e-91 340.5 440 56.6
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.2e-90 337.8 441 52.8
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 2.7e-90 336.7 428 53.0
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 3.4e-88 329.7 473 50.3
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 7.7e-85 318.5 457 51.0
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 3.2e-83 313.2 416 50.7
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 2.7e-82 310.1 437 48.3
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 3.0e-81 306.6 415 51.1
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 1.3e-79 301.2 438 49.3
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.7e-79 300.8 423 48.7
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 8.3e-79 298.5 424 49.5
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.1e-78 298.1 425 49.6
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 2.4e-78 297.0 443 49.2
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 2.0e-77 293.9 436 47.5
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 2.0e-77 293.9 469 45.2
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 2.7e-77 293.5 459 44.2
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 1.3e-76 291.2 428 47.7
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 1.3e-76 291.2 428 47.7
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 1.7e-76 290.8 427 49.4
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 2.9e-76 290.0 435 48.3
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 6.6e-76 288.9 465 43.9
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 1.1e-75 288.1 460 47.4
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 1.1e-75 288.1 463 46.4
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 1.5e-75 287.7 454 44.1
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 4.2e-75 286.2 454 45.6
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 9.5e-75 285.0 413 49.2
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.6e-74 284.3 436 47.2
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 4.7e-74 282.7 421 48.0
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 4.7e-74 282.7 454 44.9
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 1.4e-73 281.2 429 46.2
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 1.8e-73 280.8 465 44.9
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 2.3e-73 280.4 440 45.7
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.3e-73 280.4 467 44.3
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 3.0e-73 280.0 469 45.8
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 5.2e-73 279.3 419 45.8
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 5.2e-73 279.3 451 43.5
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 5.2e-73 279.3 457 43.5
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 8.9e-73 278.5 421 45.4
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 1.5e-72 277.7 439 46.2
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 2.0e-72 277.3 443 48.3
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 2.6e-72 276.9 434 45.6
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 5.7e-72 275.8 421 46.1
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 7.5e-72 275.4 457 45.1
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 7.5e-72 275.4 395 47.8
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 2.9e-71 273.5 446 45.5
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 3.7e-71 273.1 437 45.3
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 3.7e-71 273.1 461 43.8
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 4.9e-71 272.7 460 45.9
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 8.3e-71 271.9 481 43.5
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 8.3e-71 271.9 469 43.3
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 1.1e-70 271.6 462 42.9
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 1.1e-70 271.6 456 44.3
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 1.4e-70 271.2 449 44.8
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.4e-70 271.2 477 44.7
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 7.0e-70 268.9 439 45.6
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 9.2e-70 268.5 406 47.5
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 1.2e-69 268.1 151 90.1
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 1.2e-69 268.1 465 43.7
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 2.0e-69 267.3 396 49.2
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 2.0e-69 267.3 396 49.2
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 3.5e-69 266.5 449 43.9
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 4.6e-69 266.2 420 46.0
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 5.9e-69 265.8 396 49.0
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 5.9e-69 265.8 425 43.1
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 5.9e-69 265.8 434 45.9
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.0e-68 265.0 459 44.4
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 2.3e-68 263.8 494 41.7
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 2.9e-68 263.5 482 41.9
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 3.9e-68 263.1 460 43.0
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 5.0e-68 262.7 462 44.6
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 5.0e-68 262.7 452 43.8
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 6.6e-68 262.3 429 46.6
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 8.6e-68 261.9 434 46.5
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 8.6e-68 261.9 405 47.4
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 1.1e-67 261.5 438 46.3
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 1.1e-67 261.5 424 43.9
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 1.9e-67 260.8 455 43.7
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 2.5e-67 260.4 436 47.2
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 2.5e-67 260.4 447 43.2
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 3.3e-67 260.0 475 42.5
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 3.3e-67 260.0 448 44.2
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 4.3e-67 259.6 429 45.5
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 5.6e-67 259.2 479 42.0
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 5.6e-67 259.2 449 45.7
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 7.3e-67 258.8 467 43.7
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 7.3e-67 258.8 454 43.2
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 7.3e-67 258.8 476 42.0
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 9.5e-67 258.5 465 41.9
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 9.5e-67 258.5 441 44.0
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 2.1e-66 257.3 445 45.2
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 6.1e-66 255.8 453 43.9
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 1.0e-65 255.0 472 42.2
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 1.4e-65 254.6 436 44.5
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 2.3e-65 253.8 436 42.7
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 3.1e-65 253.4 499 41.7
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 6.8e-65 252.3 461 41.6
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 6.8e-65 252.3 503 41.6
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 8.9e-65 251.9 491 40.9
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 2.6e-64 250.4 527 40.4
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 3.4e-64 250.0 436 44.5
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 3.4e-64 250.0 473 41.9
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 4.4e-64 249.6 432 44.4
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 4.4e-64 249.6 455 43.5
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 7.5e-64 248.8 457 41.6
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 9.8e-64 248.4 449 42.5
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 1.3e-63 248.1 456 41.4
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 1.7e-63 247.7 475 40.4
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 3.7e-63 246.5 434 44.9
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 4.1e-62 243.0 459 42.0
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 7.0e-62 242.3 479 40.3
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 9.2e-62 241.9 392 45.9
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 3.5e-61 240.0 402 44.3
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 4.6e-61 239.6 448 42.0
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 7.8e-61 238.8 479 39.9
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 1.3e-60 238.0 454 41.2
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 8.6e-60 235.3 367 45.5
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 5.6e-59 232.6 414 42.0
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 1.8e-57 227.6 481 39.7
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 3.1e-57 226.9 401 42.1
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 8.9e-57 225.3 453 40.4
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 2.6e-56 223.8 236 58.1
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 9.8e-56 221.9 236 60.2
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 8.6e-52 208.8 477 37.1
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 1.6e-50 204.5 445 39.3
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 3.6e-50 203.4 414 39.6
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 1.9e-46 191.0 487 36.8
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 2.1e-45 187.6 139 79.1
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 1.7e-44 184.5 102 92.2
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 3.0e-44 183.7 318 42.1
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 1.1e-43 181.8 138 77.5
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 9.6e-43 178.7 417 38.1
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 1.2e-40 171.8 460 32.8
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.3e-39 168.3 417 35.0
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 5.6e-35 152.9 89 89.9
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 1.4e-33 148.3 311 41.2
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 3.1e-33 147.1 447 33.6
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 7.1e-30 136.0 329 40.7
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 7.9e-29 132.5 455 30.8
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.0e-28 132.1 170 48.2
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 4.3e-27 126.7 86 75.6
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 1.8e-25 121.3 122 62.3
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 3.4e-24 117.1 119 60.5
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 3.8e-23 113.6 384 33.1
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 4.2e-22 110.2 164 48.8
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 5.5e-14 83.2 501 25.0
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 2.1e-13 81.3 286 31.8
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 2.3e-12 77.8 71 57.7
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 1.9e-11 74.7 85 43.5
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 1.9e-11 74.7 201 31.3
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 1.1e-09 68.9 128 39.1
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 6.9e-09 66.2 78 46.2
unitig_0.g2557 Utricularia gibba HOM05D002258 ORTHO05D002539 7.6e-08 62.8 130 31.5
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 1.3e-07 62.0 117 39.3
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 5.0e-07 60.1 123 37.4
unitig_88.g27675 Utricularia gibba HOM05D002258 ORTHO05D002539 6.5e-07 59.7 121 31.4
Cfa024721 Carpinus fangiana HOM05D003909 ORTHO05D121609 8.4e-07 59.3 181 32.6
HPP92_019717 Vanilla planifolia HOM05D002258 ORTHO05D002539 5.5e-06 56.6 121 32.2
MCO15G526 Micromonas commoda HOM05D002258 ORTHO05D002539 7.2e-06 56.2 127 28.3
Oeu052506.1 Olea europaea HOM05D002258 ORTHO05D002539 7.2e-06 56.2 121 29.8


User provided reference genes

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