Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34692H Brassica oleracea HOM05D003639 ORTHO05D004246 6.8e-85 317.4 171 100.0
C04p02760 Brassica napus HOM05D003639 ORTHO05D004246 1.6e-73 279.6 162 95.1
BolC4t21916H Brassica oleracea HOM05D003639 ORTHO05D004246 1.7e-72 276.2 162 94.4
A05p02320 Brassica napus HOM05D003639 ORTHO05D004246 3.1e-69 265.4 163 90.2
BraA05t19227Z Brassica rapa HOM05D003639 ORTHO05D004246 8.9e-69 263.8 163 90.2
BcaNung06794 Brassica carinata HOM05D003639 ORTHO05D004246 7.5e-68 260.8 150 95.3
BcaC02g12784 Brassica carinata HOM05D003639 ORTHO05D004246 5.1e-56 221.5 160 80.6
A04p31660 Brassica napus HOM05D003639 ORTHO05D004246 2.6e-52 209.1 157 77.1
BraA04t18624Z Brassica rapa HOM05D003639 ORTHO05D004246 2.6e-52 209.1 157 77.1
C04p69090 Brassica napus HOM05D003639 ORTHO05D004246 5.8e-52 208.0 157 76.4
BolC4t28406H Brassica oleracea HOM05D003639 ORTHO05D004246 5.8e-52 208.0 157 76.4
Sp4g23770 Schrenkiella parvula HOM05D003639 ORTHO05D004246 7.1e-50 201.1 157 73.9
CARHR136620 Cardamine hirsuta HOM05D003639 ORTHO05D004246 1.9e-47 193.0 157 71.3
Aa31LG1G23520 Aethionema arabicum HOM05D003639 ORTHO05D004246 4.0e-45 185.3 190 59.5
AL4G39590 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 4.0e-45 185.3 157 69.4
AT2G41500 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 1.2e-44 183.7 157 67.5
THA.LOC104824426 Tarenaya hassleriana HOM05D003639 ORTHO05D004246 1.2e-44 183.7 158 68.4
Thhalv10000860m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 3.4e-44 182.2 158 67.1
Carub.0004s0611 Capsella rubella HOM05D003639 ORTHO05D004246 1.7e-43 179.9 157 66.9
Thhalv10016457m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 2.2e-43 179.5 157 66.2
Duzib248G1450 Durio zibethinus HOM05D003639 ORTHO05D004246 6.6e-40 167.9 177 58.2
arahy.Tifrunner.gnm1.ann1.6W6BYV Arachis hypogaea HOM05D003639 ORTHO05D004246 1.1e-39 167.2 177 56.5
Atru.chr1.1191 Acer truncatum HOM05D003639 ORTHO05D004246 1.9e-39 166.4 174 59.2
arahy.Tifrunner.gnm1.ann1.Y8CJQK Arachis hypogaea HOM05D003639 ORTHO05D004246 5.6e-39 164.9 179 55.9
Thecc.02G139000 Theobroma cacao HOM05D003639 ORTHO05D004246 1.6e-38 163.3 176 58.5
Gohir.A12G015000 Gossypium hirsutum HOM05D003639 ORTHO05D004246 3.6e-38 162.2 172 59.9
Gorai.008G015500 Gossypium raimondii HOM05D003639 ORTHO05D004246 3.6e-38 162.2 172 59.9
Gohir.D12G015400 Gossypium hirsutum HOM05D003639 ORTHO05D004246 4.8e-38 161.8 172 58.7
Lj5g0008946 Lotus japonicus HOM05D003639 ORTHO05D004246 4.8e-38 161.8 183 55.7
Duzib132G0222 Durio zibethinus HOM05D003639 ORTHO05D004246 8.1e-38 161.0 174 58.0
CSS0048368 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 1.8e-37 159.8 183 54.6
TWI74G0834 Tripterygium wilfordii HOM05D003639 ORTHO05D004246 1.8e-37 159.8 180 55.6
Cpa.g.sc120.6 Carica papaya HOM05D003639 ORTHO05D004246 3.1e-37 159.1 176 55.7
Prupe.7G050300 Prunus persica HOM05D003639 ORTHO05D004246 6.9e-37 157.9 184 54.3
MSTRG.6401 Avicennia marina HOM05D003639 ORTHO05D004246 9.0e-37 157.5 186 53.2
COL.COLO4_24957 Corchorus olitorius HOM05D003639 ORTHO05D004246 9.0e-37 157.5 174 57.5
Lalb_Chr21g0305241 Lupinus albus HOM05D003639 ORTHO05D004246 9.0e-37 157.5 184 55.4
MELO3C026433.2 Cucumis melo HOM05D003639 ORTHO05D004246 1.2e-36 157.1 183 53.6
CsaV3_6G036200 Cucumis sativus L. HOM05D003639 ORTHO05D004246 1.2e-36 157.1 183 53.6
Glyma.02G190600 Glycine max HOM05D003639 ORTHO05D004246 2.6e-36 156.0 180 54.4
Solyc04g016510.3 Solanum lycopersicum HOM05D003639 ORTHO05D004246 2.6e-36 156.0 180 53.3
CAN.G1237.4 Capsicum annuum HOM05D003639 ORTHO05D004246 3.4e-36 155.6 149 59.7
Sopen04g008580 Solanum pennellii HOM05D003639 ORTHO05D004246 3.4e-36 155.6 149 59.1
PGSC0003DMG400012703 Solanum tuberosum HOM05D003639 ORTHO05D004246 3.4e-36 155.6 149 59.1
Lj4C34T1 Lonicera japonica HOM05D003639 ORTHO05D004246 4.4e-36 155.2 187 54.5
ClCG08G008940 Citrullus lanatus HOM05D003639 ORTHO05D004246 5.8e-36 154.8 186 52.7
Peaxi162Scf00130g00929 Petunia axillaris HOM05D003639 ORTHO05D004246 5.8e-36 154.8 173 53.8
Ca_25791_v3 Cicer arietinum L. HOM05D003639 ORTHO05D004246 7.6e-36 154.5 180 52.8
Ciclev10006458m.g Citrus clementina HOM05D003639 ORTHO05D004246 7.6e-36 154.5 168 56.0
Haze_19749 Corylus avellana HOM05D003639 ORTHO05D004246 7.6e-36 154.5 182 52.7
MD12G1086300 Malus domestica HOM05D003639 ORTHO05D004246 7.6e-36 154.5 189 54.0
Hma1.2p1_2162F.1_g315680 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 9.9e-36 154.1 177 55.9
Actinidia39194 Actinidia chinensis HOM05D003639 ORTHO05D004246 1.3e-35 153.7 177 54.8
DCAR_014011 Daucus carota HOM05D003639 ORTHO05D004246 1.3e-35 153.7 152 59.2
Nitab4.5_0000826g0140 Nicotiana tabacum HOM05D003639 ORTHO05D004246 1.3e-35 153.7 174 54.0
Hund19126 Selenicereus undatus HOM05D003639 ORTHO05D004246 1.7e-35 153.3 151 58.3
VMungo0720G2842 Vigna mungo HOM05D003639 ORTHO05D004246 1.7e-35 153.3 170 55.3
Glyma.10G000800 Glycine max HOM05D003639 ORTHO05D004246 2.2e-35 152.9 142 62.7
Nitab4.5_0001618g0260 Nicotiana tabacum HOM05D003639 ORTHO05D004246 3.8e-35 152.1 149 58.4
Eucgr.A02297 Eucalyptus grandis HOM05D003639 ORTHO05D004246 6.4e-35 151.4 153 57.5
Nn7g37752 Nelumbo nucifera HOM05D003639 ORTHO05D004246 6.4e-35 151.4 176 55.7
Psat6g009840 Pisum sativum HOM05D003639 ORTHO05D004246 6.4e-35 151.4 180 52.2
Dinv30299 Davidia involucrata HOM05D003639 ORTHO05D004246 1.1e-34 150.6 144 60.4
PGR004G0521 Punica granatum HOM05D003639 ORTHO05D004246 1.1e-34 150.6 145 60.0
CANSAT80G2101 Cannabis sativa HOM05D003639 ORTHO05D004246 1.9e-34 149.8 143 61.5
Ah.13g076790 Amaranthus hybridus HOM05D003639 ORTHO05D004246 2.4e-34 149.4 179 54.2
Phvul.007G249600 Phaseolus vulgaris HOM05D003639 ORTHO05D004246 2.4e-34 149.4 152 57.2
TPR.G10246 Trifolium pratense HOM05D003639 ORTHO05D004246 2.4e-34 149.4 182 53.3
Rhsim03G0032000 Rhododendron simsii HOM05D003639 ORTHO05D004246 4.2e-34 148.7 181 51.4
CiPaw.09G042100 Carya illinoinensis HOM05D003639 ORTHO05D004246 9.3e-34 147.5 153 56.2
Medtr3g045130 Medicago truncatula HOM05D003639 ORTHO05D004246 1.2e-33 147.1 184 50.0
SGA_v2.0_scaffold69G23129 Striga asiatica HOM05D003639 ORTHO05D004246 1.2e-33 147.1 185 50.3
Zm00001eb017050 Zea mays HOM05D003639 ORTHO05D004246 1.2e-33 147.1 144 58.3
Sc19g0008460 Simmondsia chinensis HOM05D003639 ORTHO05D004246 1.6e-33 146.7 149 57.0
MBI13_g04793_MAGBIO Magnolia biondii HOM05D003639 ORTHO05D004246 2.1e-33 146.4 166 56.0
QL07p005224 Quercus lobata HOM05D003639 ORTHO05D004246 2.1e-33 146.4 143 56.6
TAR369G0628 Trochodendron aralioides HOM05D003639 ORTHO05D004246 2.1e-33 146.4 158 58.2
SGA_v2.0_scaffold296G47577 Striga asiatica HOM05D003639 ORTHO05D004246 4.6e-33 145.2 166 53.0
SalBow6G0945 Salvia bowleyana HOM05D003639 ORTHO05D004246 7.8e-33 144.4 178 51.1
Manes.09G015900 Manihot esculenta HOM05D003639 ORTHO05D004246 1.3e-32 143.7 143 58.0
CDE04G0356 Ceratophyllum demersum HOM05D003639 ORTHO05D004246 1.7e-32 143.3 144 62.5
Peaxi162Scf00177g10117 Petunia axillaris HOM05D003639 ORTHO05D004246 2.3e-32 142.9 150 57.3
Potri.006G045800 Populus trichocarpa HOM05D003639 ORTHO05D004246 2.3e-32 142.9 157 56.1
EL10Ac3g07157 Beta vulgaris HOM05D003639 ORTHO05D004246 3.0e-32 142.5 150 56.7
CSS0037940 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 3.0e-32 142.5 183 53.0
Oeu023136.1 Olea europaea HOM05D003639 ORTHO05D004246 3.9e-32 142.1 141 58.9
unitig_44.g31550 Utricularia gibba HOM05D003639 ORTHO05D004246 3.9e-32 142.1 149 57.0
unitig_578.g16292 Utricularia gibba HOM05D003639 ORTHO05D004246 3.9e-32 142.1 149 57.0
TPR.G1512 Trifolium pratense HOM05D003639 ORTHO05D004246 5.1e-32 141.7 174 51.1
CANSAT80G0359 Cannabis sativa HOM05D003639 ORTHO05D004246 6.6e-32 141.4 143 60.1
AUR62024528 Chenopodium quinoa HOM05D003639 ORTHO05D004246 6.6e-32 141.4 169 53.3
Aqoxy3G00063 Aquilegia oxysepala HOM05D003639 ORTHO05D004246 8.7e-32 141.0 156 57.1
Sabra06G0031300 Salix brachista HOM05D003639 ORTHO05D004246 8.7e-32 141.0 154 56.5
AUR62026120 Chenopodium quinoa HOM05D003639 ORTHO05D004246 1.1e-31 140.6 149 57.0
Os03g0355200 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 4.3e-31 138.7 140 57.9
Os03g0355400 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 4.3e-31 138.7 140 57.9
HPP92_010210 Vanilla planifolia HOM05D000527 ORTHO05D000559 2.1e-30 136.3 173 53.2
ECA234G2577 Erigeron canadensis HOM05D003639 ORTHO05D004246 2.8e-30 136.0 160 53.8
HPP92_010189 Vanilla planifolia HOM05D003639 ORTHO05D004246 6.2e-30 134.8 173 53.2
ATR0665G145 Amborella trichopoda HOM05D003639 ORTHO05D004246 8.1e-30 134.4 165 50.3
CBR_g723 Chara braunii HOM05D003639 ORTHO05D004246 1.4e-29 133.7 143 58.0
FAN09G0054 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.4e-29 133.7 152 53.3
FAN24G0290 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.4e-29 133.7 152 53.3
PSO832G3057 Papaver somniferum HOM05D003639 ORTHO05D004246 1.4e-29 133.7 155 55.5
FAN02G3905 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.4e-29 132.9 143 55.9
FAN17G3014 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.4e-29 132.9 143 55.9
FAN19G1783 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.4e-29 132.9 152 53.3
Medtr5g022690 Medicago truncatula HOM05D003639 ORTHO05D004246 2.4e-29 132.9 142 55.6
FAN10G2664 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.1e-29 132.5 152 53.3
FAN14G4828 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.1e-29 132.5 152 53.3
FAN14G5922 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.1e-29 132.5 152 53.3
Migut.J01707 Erythranthe guttata HOM05D003639 ORTHO05D004246 4.0e-29 132.1 157 51.6
Lsat_1_v5_gn_4_41600 Lactuca sativa HOM05D003639 ORTHO05D004246 4.0e-29 132.1 164 51.2
PSO063G3048 Papaver somniferum HOM05D003639 ORTHO05D004246 6.9e-29 131.3 144 56.9
FAN03G0195 Fragaria x ananassa HOM05D003639 ORTHO05D004246 9.0e-29 131.0 152 52.6
FAN06G0994 Fragaria x ananassa HOM05D003639 ORTHO05D004246 9.0e-29 131.0 152 52.6
FAN07G1748 Fragaria x ananassa HOM05D003639 ORTHO05D004246 9.0e-29 131.0 152 52.6
FAN09G4382 Fragaria x ananassa HOM05D003639 ORTHO05D004246 9.0e-29 131.0 152 52.6
FAN13G2401 Fragaria x ananassa HOM05D003639 ORTHO05D004246 9.0e-29 131.0 143 55.2
FAN23G2202 Fragaria x ananassa HOM05D003639 ORTHO05D004246 9.0e-29 131.0 152 52.6
FAN28G1931 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.2e-28 130.6 152 53.3
FvH4_6g24750 Fragaria vesca HOM05D003639 ORTHO05D004246 2.0e-28 129.8 152 52.6
FAN01G0512 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.6e-28 129.4 152 52.6
FAN05G0107 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.4e-28 129.0 141 55.3
Sed0002463 Sechium edule HOM05D003639 ORTHO05D004246 4.5e-28 128.6 122 60.7
SEGI_17823 Sequoiadendron giganteum HOM05D003639 ORTHO05D004246 1.3e-27 127.1 145 54.5
Pp3c9_11970 Physcomitrium patens HOM05D003639 ORTHO05D004246 1.7e-27 126.7 163 49.1
FAN22G1757 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.2e-27 126.3 152 51.3
Mapoly0061s0123 Marchantia polymorpha HOM05D003639 ORTHO05D004246 2.9e-27 125.9 168 49.4
FAN27G3180 Fragaria x ananassa HOM05D003639 ORTHO05D004246 8.4e-27 124.4 152 51.3
Hma1.2p1_1333F.1_g276240 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 8.4e-27 124.4 134 56.7
Hma1.2p1_0338F.1_g129500 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 4.2e-26 122.1 130 57.7
FAN16G0989 Fragaria x ananassa HOM05D003639 ORTHO05D004246 5.6e-23 111.7 152 47.4
FAN17G0086 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.1e-22 109.8 139 50.4
RcHm_v2.0_Chr3g0484331 Rosa chinensis HOM05D003639 ORTHO05D004246 6.2e-22 108.2 123 51.2
AagrBONN_evm.TU.Sc2ySwM_117.1154 Anthoceros agrestis HOM05D003639 ORTHO05D004246 3.1e-21 105.9 149 45.6
Atru.chr6.1378 Acer truncatum HOM05D003639 ORTHO05D004246 5.3e-21 105.1 112 56.2
Medtr0012s0110 Medicago truncatula HOM05D003639 ORTHO05D004246 3.4e-20 102.4 125 52.0
SMO356G0612 Selaginella moellendorffii HOM05D003639 ORTHO05D004246 7.6e-20 101.3 141 46.8
Potri.016G042250 Populus trichocarpa HOM05D003639 ORTHO05D004246 1.4e-18 97.1 117 53.0
Mapoly0014s0154 Marchantia polymorpha HOM05D003639 ORTHO05D004246 7.1e-18 94.7 142 45.1
FAN25G1774 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.8e-16 90.1 152 42.1
Psat4g106880 Pisum sativum HOM05D003639 ORTHO05D004246 1.8e-13 80.1 111 45.0
vmacro21947 Vaccinium macrocarpon HOM05D003639 ORTHO05D004246 1.2e-12 77.4 136 40.4
MD14G1080500 Malus domestica HOM05D003639 ORTHO05D004246 3.4e-12 75.9 87 51.7
MCO12G002 Micromonas commoda HOM05D003639 ORTHO05D004246 2.2e-11 73.2 117 43.6
BcaNung04072 Brassica carinata HOM05D003639 ORTHO05D004246 1.6e-09 67.0 44 81.8
MELO3C019777.2 Cucumis melo HOM05D003639 ORTHO05D004246 4.6e-09 65.5 96 46.9
BcaB06g29187 Brassica carinata HOM05D003639 ORTHO05D004246 2.3e-08 63.2 36 86.1
GSVIVG01033551001 Vitis vinifera HOM05D003639 ORTHO05D004246 3.0e-08 62.8 48 66.7
TAR065G0005 Trochodendron aralioides HOM05D003639 ORTHO05D004246 8.7e-08 61.2 78 47.4
VMungo0540G1675 Vigna mungo HOM05D003639 ORTHO05D004246 9.7e-07 57.8 75 46.7
Sed0000547 Sechium edule HOM05D003639 ORTHO05D004246 1.3e-06 57.4 66 54.5
Atru.chr6.1379 Acer truncatum HOM05D003639 ORTHO05D004246 8.2e-06 54.7 41 68.3
Cfa024100 Carpinus fangiana HOM05D003639 ORTHO05D004246 8.2e-06 54.7 125 36.0


User provided reference genes

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