Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t33205H Brassica oleracea HOM05D005906 ORTHO05D007359 0.0e+00 1637.1 878 100.0
C05p44790 Brassica napus HOM05D005906 ORTHO05D007359 0.0e+00 1446.8 878 91.6
A05p29280 Brassica napus HOM05D005906 ORTHO05D007359 0.0e+00 1421.4 878 89.5
BraA05t21811Z Brassica rapa HOM05D005906 ORTHO05D007359 0.0e+00 1410.2 885 88.5
Sp3g17850 Schrenkiella parvula HOM05D005906 ORTHO05D007359 0.0e+00 1236.9 892 76.7
BcaB06g26053 Brassica carinata HOM05D005906 ORTHO05D007359 0.0e+00 1210.7 886 79.1
Thhalv10020134m.g Eutrema salsugineum HOM05D005906 ORTHO05D007359 0.0e+00 1127.5 799 76.8
AT3G19840 Arabidopsis thaliana HOM05D005906 ORTHO05D007359 0.0e+00 1123.2 890 71.1
AL3G33350 Arabidopsis lyrata HOM05D005906 ORTHO05D007359 0.0e+00 1107.0 777 77.5
Carub.0003s1972 Capsella rubella HOM05D005906 ORTHO05D007359 0.0e+00 1089.3 892 70.4
Aa31LG8G6610 Aethionema arabicum HOM05D005906 ORTHO05D007359 6.9e-274 947.6 894 61.7
CARHR095360 Cardamine hirsuta HOM05D005906 ORTHO05D007359 3.9e-269 931.8 649 78.4
BcaC05g28400 Brassica carinata HOM05D005906 ORTHO05D007359 2.1e-246 856.3 486 96.5
Duzib251G0270 Durio zibethinus HOM05D005906 ORTHO05D007359 1.2e-206 724.2 864 51.2
Gohir.D01G138300 Gossypium hirsutum HOM05D005906 ORTHO05D007359 1.2e-204 717.6 852 51.5
Gohir.A01G145818 Gossypium hirsutum HOM05D005906 ORTHO05D007359 1.4e-202 710.7 790 53.3
Thecc.02G295800 Theobroma cacao HOM05D005906 ORTHO05D007359 1.4e-202 710.7 819 52.4
Gorai.002G167700 Gossypium raimondii HOM05D005906 ORTHO05D007359 1.2e-201 707.6 871 50.4
Atru.chr11.1316 Acer truncatum HOM05D005906 ORTHO05D007359 1.7e-200 703.7 896 49.7
Cfa008717 Carpinus fangiana HOM05D005906 ORTHO05D007359 1.0e-197 694.5 920 48.7
Ciclev10030612m.g Citrus clementina HOM05D005906 ORTHO05D007359 7.5e-196 688.3 855 50.5
CiPaw.05G166700 Carya illinoinensis HOM05D005906 ORTHO05D007359 2.8e-195 686.4 835 52.0
RcHm_v2.0_Chr4g0446421 Rosa chinensis HOM05D005906 ORTHO05D007359 4.1e-194 682.6 855 49.9
Potri.010G170400 Populus trichocarpa HOM05D005906 ORTHO05D007359 1.9e-191 673.7 857 49.5
Aqoxy3G04280 Aquilegia oxysepala HOM05D005906 ORTHO05D007359 3.3e-191 672.9 854 49.2
CAN.G419.29 Capsicum annuum HOM05D005906 ORTHO05D007359 4.3e-191 672.5 841 49.8
CSS0007611 Camellia sinensis var. sinensis HOM05D005906 ORTHO05D007359 7.3e-191 671.8 855 49.2
Haze_11727 Corylus avellana HOM05D005906 ORTHO05D007359 2.1e-190 670.2 969 45.9
Prupe.1G345100 Prunus persica HOM05D005906 ORTHO05D007359 1.8e-189 667.2 876 48.6
Lalb_Chr01g0001511 Lupinus albus HOM05D005906 ORTHO05D007359 1.1e-186 657.9 918 46.1
Sopen04g003870 Solanum pennellii HOM05D005906 ORTHO05D007359 1.1e-186 657.9 854 48.0
Solyc04g008700.3 Solanum lycopersicum HOM05D005906 ORTHO05D007359 5.4e-186 655.6 854 48.0
Lj3g0019719 Lotus japonicus HOM05D005906 ORTHO05D007359 1.6e-185 654.1 817 50.2
MBI03_g33918_MAGBIO Magnolia biondii HOM05D005906 ORTHO05D007359 2.7e-185 653.3 808 49.8
Glyma.11G102600 Glycine max HOM05D005906 ORTHO05D007359 4.6e-185 652.5 837 49.2
VMungo1127G1981 Vigna mungo HOM05D005906 ORTHO05D007359 7.8e-185 651.7 840 48.9
Actinidia04315 Actinidia chinensis HOM05D005906 ORTHO05D007359 6.6e-184 648.7 821 47.9
Glyma.11G103100 Glycine max HOM05D005906 ORTHO05D007359 8.6e-184 648.3 837 49.2
TAR371G1124 Trochodendron aralioides HOM05D005906 ORTHO05D007359 2.5e-183 646.7 860 48.6
Medtr4g074440 Medicago truncatula HOM05D005906 ORTHO05D007359 3.3e-183 646.4 768 51.6
Nn3g18680 Nelumbo nucifera HOM05D005906 ORTHO05D007359 5.6e-183 645.6 936 45.8
FAN07G0309 Fragaria x ananassa HOM05D005906 ORTHO05D007359 9.5e-183 644.8 845 48.4
FvH4_4g36700 Fragaria vesca HOM05D005906 ORTHO05D007359 6.2e-182 642.1 832 48.7
Glyma.12G028100 Glycine max HOM05D005906 ORTHO05D007359 6.2e-182 642.1 845 48.3
Rhsim09G0071900 Rhododendron simsii HOM05D005906 ORTHO05D007359 4.0e-181 639.4 910 46.0
Nitab4.5_0001983g0010 Nicotiana tabacum HOM05D005906 ORTHO05D007359 1.5e-180 637.5 879 46.2
Phvul.011G031500 Phaseolus vulgaris HOM05D005906 ORTHO05D007359 2.6e-180 636.7 882 47.1
Eucgr.G02565 Eucalyptus grandis HOM05D005906 ORTHO05D007359 4.4e-180 636.0 843 48.0
FAN17G1621 Fragaria x ananassa HOM05D005906 ORTHO05D007359 4.4e-180 636.0 858 48.3
MD16G1000200 Malus domestica HOM05D005906 ORTHO05D007359 4.4e-180 636.0 794 49.1
Dinv12052 Davidia involucrata HOM05D005906 ORTHO05D007359 5.8e-180 635.6 872 47.2
TWI53G0095 Tripterygium wilfordii HOM05D005906 ORTHO05D007359 8.3e-179 631.7 919 44.8
arahy.Tifrunner.gnm1.ann1.KE9NE3 Arachis hypogaea HOM05D005906 ORTHO05D007359 1.1e-178 631.3 861 47.7
GSVIVG01010209001 Vitis vinifera HOM05D005906 ORTHO05D007359 1.9e-178 630.6 869 47.0
TPR.G21563 Trifolium pratense HOM05D005906 ORTHO05D007359 2.4e-178 630.2 740 51.4
PSO782G0435 Papaver somniferum HOM05D005906 ORTHO05D007359 3.2e-178 629.8 799 48.3
TWI74G1493 Tripterygium wilfordii HOM05D005906 ORTHO05D007359 4.1e-178 629.4 829 48.9
arahy.Tifrunner.gnm1.ann1.LWY0NT Arachis hypogaea HOM05D005906 ORTHO05D007359 9.2e-178 628.2 912 46.5
MELO3C024279.2 Cucumis melo HOM05D005906 ORTHO05D007359 2.0e-177 627.1 849 46.3
PSO063G6838 Papaver somniferum HOM05D005906 ORTHO05D007359 4.6e-177 625.9 843 47.1
Manes.03G080900 Manihot esculenta HOM05D005906 ORTHO05D007359 7.8e-177 625.2 666 55.3
Lju1295A4T31 Lonicera japonica HOM05D005906 ORTHO05D007359 1.0e-176 624.8 792 48.2
Peaxi162Scf00329g00515 Petunia axillaris HOM05D005906 ORTHO05D007359 1.5e-175 620.9 860 48.0
PGR142G1078 Punica granatum HOM05D005906 ORTHO05D007359 3.3e-175 619.8 927 44.7
CsaV3_7G033650 Cucumis sativus L. HOM05D005906 ORTHO05D007359 8.1e-174 615.1 890 45.4
Sed0021796 Sechium edule HOM05D005906 ORTHO05D007359 5.2e-173 612.5 878 45.4
FAN12G0559 Fragaria x ananassa HOM05D005906 ORTHO05D007359 8.9e-173 611.7 832 47.1
Oeu022359.1 Olea europaea HOM05D005906 ORTHO05D007359 5.8e-172 609.0 873 46.5
HanXRQChr17g0540691 Helianthus annuus HOM05D005906 ORTHO05D007359 7.5e-172 608.6 858 45.8
Sc10g0007040 Simmondsia chinensis HOM05D005906 ORTHO05D007359 1.7e-171 607.4 866 45.3
DCAR_006599 Daucus carota HOM05D005906 ORTHO05D007359 1.6e-169 600.9 833 46.8
CANSAT64G0121 Cannabis sativa HOM05D005906 ORTHO05D007359 2.7e-169 600.1 842 47.1
Migut.N00351 Erythranthe guttata HOM05D005906 ORTHO05D007359 1.7e-168 597.4 824 46.2
CDE08G0300 Ceratophyllum demersum HOM05D005906 ORTHO05D007359 3.0e-168 596.7 770 48.1
EL10Ac9g22918 Beta vulgaris HOM05D005906 ORTHO05D007359 3.3e-167 593.2 795 47.0
ECA246G1682 Erigeron canadensis HOM05D005906 ORTHO05D007359 2.8e-166 590.1 881 47.4
ClCG09G001670 Citrullus lanatus HOM05D005906 ORTHO05D007359 1.3e-163 581.3 897 45.5
AUR62017662 Chenopodium quinoa HOM05D005906 ORTHO05D007359 7.1e-162 575.5 823 45.3
Os10g0485000 Oryza sativa ssp. japonica HOM05D005906 ORTHO05D007359 4.6e-161 572.8 841 44.2
AUR62015199 Chenopodium quinoa HOM05D005906 ORTHO05D007359 1.1e-157 561.6 820 45.0
SGA_v2.0_scaffold317G48430 Striga asiatica HOM05D005906 ORTHO05D007359 5.2e-157 559.3 839 45.6
Lsat_1_v5_gn_0_9300 Lactuca sativa HOM05D005906 ORTHO05D007359 4.2e-154 549.7 828 43.2
COL.COLO4_16625 Corchorus olitorius HOM05D005906 ORTHO05D007359 1.9e-151 540.8 575 56.2
unitig_26.g9977 Utricularia gibba HOM05D005906 ORTHO05D007359 3.0e-144 516.9 653 47.9
Mapoly0048s0088 Marchantia polymorpha HOM05D005906 ORTHO05D007359 1.9e-138 497.7 800 41.9
Atru.chr11.1229 Acer truncatum HOM05D005906 ORTHO05D007359 1.3e-136 491.5 643 49.1
SMO347G0007 Selaginella moellendorffii HOM05D005906 ORTHO05D007359 1.3e-136 491.5 826 42.4
HPP92_015160 Vanilla planifolia HOM05D005906 ORTHO05D007359 6.9e-133 479.2 558 50.0
Pp3c11_2890 Physcomitrium patens HOM05D005906 ORTHO05D007359 7.1e-130 469.2 660 44.5
Pp3c7_20890 Physcomitrium patens HOM05D005906 ORTHO05D007359 7.9e-129 465.7 837 40.6
CDE04G3187 Ceratophyllum demersum HOM05D005906 ORTHO05D007359 1.1e-125 455.3 723 43.0
QL03p043467 Quercus lobata HOM05D005906 ORTHO05D007359 5.0e-123 446.4 743 44.1
CBR_g3777 Chara braunii HOM05D005906 ORTHO05D007359 6.1e-121 439.5 644 42.9
Ca_03031_v3 Cicer arietinum L. HOM05D005906 ORTHO05D007359 1.4e-112 411.8 419 57.5
Nitab4.5_0000129g0240 Nicotiana tabacum HOM05D005906 ORTHO05D007359 1.8e-109 401.4 421 56.1
ATR0618G038 Amborella trichopoda HOM05D005906 ORTHO05D007359 2.2e-102 377.9 684 39.3
Psat7g176600 Pisum sativum HOM05D005906 ORTHO05D007359 4.8e-102 376.7 664 41.7
Zm00001eb221360 Zea mays HOM05D005906 ORTHO05D007359 4.8e-102 376.7 485 47.6
HanXRQChr13g0425271 Helianthus annuus HOM05D005906 ORTHO05D007359 2.6e-100 370.9 608 41.6
Cpa.g.sc63.9 Carica papaya HOM05D005906 ORTHO05D007359 1.2e-97 362.1 389 54.5
SEGI_19557 Sequoiadendron giganteum HOM05D005906 ORTHO05D007359 2.8e-94 350.9 417 48.9
Sabra10G0130100 Salix brachista HOM05D005906 ORTHO05D007359 1.1e-82 312.4 480 45.6
SEGI_30722 Sequoiadendron giganteum HOM05D005906 ORTHO05D007359 2.2e-78 298.1 391 45.8
vmacro16015 Vaccinium macrocarpon HOM05D005906 ORTHO05D007359 4.5e-76 290.4 533 38.3
MD13G1008000 Malus domestica HOM05D005906 ORTHO05D007359 1.4e-64 252.3 264 53.8
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 2.3e-64 251.5 334 46.4
vmacro16014 Vaccinium macrocarpon HOM05D005906 ORTHO05D007359 1.7e-62 245.4 370 44.3
SEGI_27443 Sequoiadendron giganteum HOM05D005906 ORTHO05D007359 6.4e-62 243.4 470 40.9
Ca_03032_v3 Cicer arietinum L. HOM05D005906 ORTHO05D007359 1.2e-57 229.2 438 38.6
Psat5g190360 Pisum sativum HOM05D005906 ORTHO05D007359 2.3e-56 224.9 236 56.4
MD13G1007900 Malus domestica HOM05D005906 ORTHO05D007359 2.2e-54 218.4 352 42.3
QL03p043450 Quercus lobata HOM05D005906 ORTHO05D007359 8.3e-54 216.5 222 56.3
Nitab4.5_0000129g0230 Nicotiana tabacum HOM05D005906 ORTHO05D007359 1.1e-50 206.1 432 36.6
ATR0618G367 Amborella trichopoda HOM05D005906 ORTHO05D007359 8.4e-46 189.9 169 60.4
COL.COLO4_27510 Corchorus olitorius HOM05D005906 ORTHO05D007359 2.5e-42 178.3 273 41.4
arahy.Tifrunner.gnm1.ann1.HBZ9IW Arachis hypogaea HOM05D005906 ORTHO05D007359 4.7e-41 174.1 313 39.9
Psat7g176560 Pisum sativum HOM05D005906 ORTHO05D007359 1.9e-21 109.0 183 43.2
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 3.9e-19 101.3 85 60.0
CDE04G0879 Ceratophyllum demersum HOM05D005906 ORTHO05D007359 3.7e-17 94.7 81 60.5
Nitab4.5_0001093g0090 Nicotiana tabacum HOM05D002048 ORTHO05D002146 3.4e-15 88.2 558 25.6
Hma1.2p1_0933F.1_g238315 Hydrangea macrophylla HOM05D005906 ORTHO05D007359 1.0e-14 86.7 79 53.2
Hma1.2p1_2428F.1_g322000 Hydrangea macrophylla HOM05D005906 ORTHO05D007359 1.0e-14 86.7 79 53.2
Haze_10301 Corylus avellana HOM05D002048 ORTHO05D002146 5.1e-11 74.3 521 24.0
arahy.Tifrunner.gnm1.ann1.RUY2TK Arachis hypogaea HOM05D005906 ORTHO05D007359 8.7e-11 73.6 51 74.5
vmacro01946 Vaccinium macrocarpon HOM05D002048 ORTHO05D002146 3.3e-10 71.6 517 23.2
COL.COLO4_28464 Corchorus olitorius HOM05D002048 ORTHO05D002146 4.3e-10 71.2 471 22.7
Oeu037291.1 Olea europaea HOM05D002048 ORTHO05D002146 4.3e-10 71.2 473 24.9
unitig_26.g9560 Utricularia gibba HOM05D002048 ORTHO05D002146 4.3e-10 71.2 608 21.5
Cpa.g.c31481.2 Carica papaya HOM05D005906 ORTHO05D007359 6.3e-09 67.4 146 35.6
Eucgr.F02226 Eucalyptus grandis HOM05D002048 ORTHO05D002146 8.2e-09 67.0 504 22.0
HanXRQChr10g0295361 Helianthus annuus HOM05D002048 ORTHO05D002146 1.4e-08 66.2 490 22.2
Nitab4.5_0000001g0490 Nicotiana tabacum HOM05D002048 ORTHO05D002146 1.4e-08 66.2 542 23.4
Lsat_1_v5_gn_1_581 Lactuca sativa HOM05D002048 ORTHO05D002146 3.1e-08 65.1 492 22.6
Cre09.g393551 Chlamydomonas reinhardtii HOM05D005906 ORTHO05D007359 5.3e-08 64.3 651 20.4
Ca_03028_v3 Cicer arietinum L. HOM05D000001 ORTHO05D010984 1.2e-07 63.2 47 68.1
MCO09G642 Micromonas commoda HOM05D005906 ORTHO05D007359 1.5e-07 62.8 70 44.3
CANSAT25G3132 Cannabis sativa HOM05D002048 ORTHO05D002146 2.6e-07 62.0 279 24.0
Zm00001eb162910 Zea mays HOM05D002048 ORTHO05D002146 2.6e-07 62.0 545 21.1
Psat6g017360 Pisum sativum HOM05D002048 ORTHO05D002146 7.7e-07 60.5 366 22.7
CAN.G309.145 Capsicum annuum HOM05D002048 ORTHO05D000034 1.0e-06 60.1 424 22.9
Hund00421 Selenicereus undatus HOM05D002048 ORTHO05D002146 1.0e-06 60.1 554 21.1
Zm00001eb162920 Zea mays HOM05D002048 ORTHO05D002146 1.3e-06 59.7 537 21.0
Rhsim06G0064500 Rhododendron simsii HOM05D002048 ORTHO05D002146 1.7e-06 59.3 464 23.3
SMO367G1015 Selaginella moellendorffii HOM05D002048 ORTHO05D002146 2.9e-06 58.5 533 21.4
CAN.G309.109 Capsicum annuum HOM05D002048 ORTHO05D002146 3.8e-06 58.2 334 24.9
Pp3c19_9950 Physcomitrium patens HOM05D002048 ORTHO05D002146 3.8e-06 58.2 686 21.3
Solyc11g044340.3 Solanum lycopersicum HOM05D002048 ORTHO05D002146 3.8e-06 58.2 505 24.2
arahy.Tifrunner.gnm1.ann1.SU0RK2 Arachis hypogaea HOM05D002048 ORTHO05D002146 6.5e-06 57.4 273 23.4
Nitab4.5_0005621g0040 Nicotiana tabacum HOM05D005906 ORTHO05D007359 6.5e-06 57.4 86 48.8
arahy.Tifrunner.gnm1.ann1.R5JV3U Arachis hypogaea HOM05D002048 ORTHO05D002146 8.5e-06 57.0 273 23.4


User provided reference genes

Program Settings