Gene: Zm00001eb162920

General Information

Structural Information

  • Species Zea mays
  • Gene Identifier Zm00001eb162920
  • Transcript Identifier Zm00001eb162920_T005
  • Gene Type Coding gene
  • Location 3 : 233962628-233989116 : positive

Gene Family Information

  • ID HOM05D002048
  • #Genes/#Species 324/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Zm00001eb162920_T005
  • pid Zm00001eb162920_P005
  • uniprot A0A1D6NNN9
  • uniprot A0A1D6NNN7
  • uniprot A0A1D6NNQ8
  • uniprot A0A1D6NNM3
  • uniprot A0A1D6NNR7
  • uniprot A0A1D6NNQ5
  • uniprot A0A1D6NNQ4
  • uniprot A0A1D6NNQ2
  • uniprot A0A1D6NNS3
  • uniprot A0A1D6NNP0
  • uniprot A0A1D6NNR1
  • uniprot A0A1D6NNS1
  • uniprot A0A1D6NNV4
  • uniprot A0A1D6NNS0
  • uniprot A0A1D6NNU2
  • uniprot A0A1D6NNV3
  • uniprot A0A1D6NNV2
  • uniprot A0A1D6NNV1
  • uniprot A0A3L6FK26
  • entrez 103651644
  • refseq XM_008677330.1
  • refseq XP_008675546.1
  • refseq XP_008675551.1
  • refseq XP_008675550.1
  • refseq XP_008675552.1
  • refseq XM_008677324.1
  • refseq XM_008677325.1
  • refseq XM_008677326.1
  • refseq XM_008677327.1
  • refseq XP_008675548.1
  • refseq XM_008677328.1
  • refseq XP_008675547.1
  • refseq XM_008677329.1
  • refseq XP_008675549.1
  • V4_identifier Zm00001d044573

Descriptions

  • Description Zm00001e020778
  • Description Pre-mRNA-processing protein 40A
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045292
IEA
GOA DatabasemRNA cis splicing, via spliceosome
GO:0045292
IEA
InterPromRNA cis splicing, via spliceosome
GO:0006412
IEA
GOA Databasetranslation
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome
GO:0008380
ISO
PLAZA Integrative OrthologyRNA splicing AT3G19670

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
IEA
GOA Databasestructural constituent of ribosome
GO:0003723
IBA
GOA DatabaseRNA binding
GO:0005515
IEA
InterProprotein binding
GO:0070063
ISO
PLAZA Integrative OrthologyRNA polymerase binding AT3G19670

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005840
IEA
GOA Databaseribosome
GO:0071004
IBA
GOA DatabaseU2-type prespliceosome
GO:0005685
IBA
GOA DatabaseU1 snRNP
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G19670
GO:0016592
ISO
PLAZA Integrative Orthologymediator complex AT1G44910
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G44910

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002713 FF domain
IPR039726 Pre-mRNA-processing factor Prp40
IPR001202 WW domain
IPR036517 FF domain superfamily
IPR036020 WW domain superfamily
Mapman id Description
16.2.1.1.5.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).accessory protein activities.pre-mRNA-processing protein (PRP40A/B)