Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1623.2 799 100.0
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1595.1 799 98.2
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1591.6 799 97.4
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1587.8 799 97.5
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1562.0 801 96.9
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1559.7 799 95.9
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1533.9 799 94.4
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1527.3 799 93.4
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1523.8 799 93.0
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1520.8 799 93.4
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1519.6 799 93.1
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1519.6 799 93.1
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1516.1 799 92.7
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1515.0 800 93.1
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1500.7 797 90.7
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1496.9 797 90.3
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1461.8 799 88.6
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1400.2 855 81.4
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1380.2 758 88.8
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1350.9 813 80.1
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1292.7 809 77.5
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1291.6 807 76.6
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1291.2 807 77.1
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1291.2 809 77.6
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1290.8 807 77.4
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1290.4 807 77.7
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1289.6 807 77.7
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1288.5 809 77.5
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1288.1 809 77.0
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1287.7 808 76.6
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1287.7 809 77.5
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1286.2 812 76.6
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1285.8 810 75.9
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1284.2 809 77.3
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1283.1 809 75.6
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1281.2 809 76.8
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1278.1 807 77.1
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1277.3 808 75.1
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1277.3 818 76.2
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1274.6 807 77.0
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1274.6 807 76.1
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1272.7 808 75.5
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1270.8 807 76.8
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1270.4 807 76.2
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1268.1 812 76.2
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1267.3 808 76.2
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1266.1 808 75.0
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1265.8 812 75.2
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1265.8 806 75.3
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1262.7 811 75.2
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1261.9 812 74.9
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1257.7 805 75.5
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1257.7 809 75.2
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1256.9 807 75.2
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1256.9 806 75.3
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1255.4 812 74.6
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1255.0 801 75.7
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1255.0 804 75.1
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1254.2 806 75.4
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1253.0 804 75.6
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1253.0 806 75.4
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1250.3 806 75.1
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1248.8 807 75.2
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1246.5 810 75.7
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1242.6 807 75.1
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1233.0 805 74.0
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1231.9 812 73.3
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1224.5 806 74.4
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1222.6 798 73.2
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1219.9 810 73.2
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1219.1 808 73.1
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1215.7 883 68.3
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1210.3 802 73.1
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1208.0 797 72.6
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1208.0 808 72.5
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1207.6 813 72.9
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1202.2 829 71.9
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1198.0 812 72.4
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1195.6 805 71.8
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1194.5 806 72.1
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1192.2 805 71.6
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1191.8 802 72.2
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1187.9 805 71.4
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1187.2 809 71.4
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1186.0 800 71.8
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1182.2 808 71.8
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1172.5 801 71.0
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1169.5 805 70.1
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1168.7 805 69.8
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1166.8 806 71.3
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1164.4 804 70.5
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1162.9 869 67.3
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1154.4 859 65.9
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1153.7 801 70.0
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1152.9 806 69.7
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1152.1 805 69.1
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1151.0 804 69.4
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1149.4 807 71.7
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1147.9 787 72.2
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1141.7 802 69.6
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1129.8 810 68.9
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1120.1 819 67.4
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1112.4 912 62.6
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1103.6 812 67.7
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1099.0 963 59.9
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1096.6 813 67.2
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1087.4 776 68.4
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1081.2 803 66.5
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1081.2 963 59.2
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 5.5e-312 1074.7 824 64.3
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 1.4e-297 1026.2 806 64.0
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 2.1e-293 1012.3 795 62.9
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 2.0e-288 995.7 813 63.8
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 1.6e-266 922.9 606 73.8
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 6.9e-265 917.5 803 58.7
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 3.5e-232 808.9 781 56.6
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 5.1e-191 672.2 855 44.8
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 2.1e-176 623.6 381 77.7
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 2.8e-165 586.6 834 40.9
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 5.1e-151 539.3 803 41.6
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 2.1e-149 533.9 941 35.0
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 3.8e-146 523.1 842 38.4
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 5.5e-121 439.5 419 55.6
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 2.6e-110 404.1 316 62.7
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 8.3e-101 372.5 244 70.9
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 1.0e-98 365.5 350 58.0
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 1.5e-89 335.1 236 70.8
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 2.8e-72 277.7 198 67.7
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 3.0e-66 257.7 173 75.1
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 1.4e-47 195.7 304 40.5
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 9.0e-47 193.0 141 70.9
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 2.9e-45 188.0 190 55.8
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 1.3e-37 162.5 264 39.8
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 3.8e-37 161.0 90 80.0
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 1.5e-33 149.1 103 68.0
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 4.8e-32 144.1 133 51.1
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 2.6e-30 138.3 104 60.6
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 2.9e-29 134.8 100 70.0
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 8.5e-29 133.3 120 60.8
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 2.5e-28 131.7 113 51.3
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 4.2e-28 131.0 190 43.2
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 5.5e-28 130.6 79 79.7
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 1.2e-27 129.4 176 44.3
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 6.7e-26 123.6 118 54.2
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 8.2e-24 116.7 175 41.1
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 5.3e-23 114.0 259 31.7
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 3.4e-22 111.3 115 52.2
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 2.1e-19 102.1 69 69.6
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 3.3e-17 94.7 56 78.6
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 4.4e-17 94.4 50 82.0
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 9.7e-17 93.2 73 67.1
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 1.1e-15 89.7 43 88.4
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 6.5e-13 80.5 136 44.1
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 9.4e-12 76.6 69 56.5
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 1.6e-11 75.9 129 38.0
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 3.6e-11 74.7 60 51.7
Sed0011564 Sechium edule HOM05D000344 ORTHO05D003478 3.6e-11 74.7 433 21.7
GSVIVG01035988001 Vitis vinifera HOM05D000344 ORTHO05D003478 8.8e-10 70.1 385 22.1
Manes.16G131400 Manihot esculenta HOM05D000344 ORTHO05D003478 2.6e-09 68.6 405 22.2
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 1.1e-07 63.2 57 56.1
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 1.8e-07 62.4 68 51.5
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 3.5e-06 58.2 57 54.4
Gohir.D10G199250 Gossypium hirsutum HOM05D004364 ORTHO05D017991 5.9e-06 57.4 57 54.4
Gohir.D11G177550 Gossypium hirsutum HOM05D004364 ORTHO05D017991 5.9e-06 57.4 57 54.4


User provided reference genes

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