Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08754 Brassica carinata HOM05D000113 ORTHO05D008110 3.1e-50 201.4 99 100.0
BcaNung06419 Brassica carinata HOM05D000113 ORTHO05D008110 3.1e-50 201.4 99 100.0
BcaNung07106 Brassica carinata HOM05D000113 ORTHO05D027285 3.1e-50 201.4 99 100.0
BolC4t21666H Brassica oleracea HOM05D000113 ORTHO05D008110 3.2e-47 191.4 99 94.9
A05p00280 Brassica napus HOM05D000113 ORTHO05D008110 4.2e-47 191.0 99 94.9
BraA05t19025Z Brassica rapa HOM05D000113 ORTHO05D008110 4.2e-47 191.0 99 94.9
BcaC02g12550 Brassica carinata HOM05D000113 ORTHO05D008110 1.2e-46 189.5 99 93.9
C04p00190 Brassica napus HOM05D000113 ORTHO05D008110 1.2e-46 189.5 99 93.9
Sp4g29610 Schrenkiella parvula HOM05D000113 ORTHO05D008110 8.3e-43 176.8 97 89.7
Carub.0004s3040 Capsella rubella HOM05D000113 ORTHO05D008110 3.5e-41 171.4 99 80.8
AL4G47250 Arabidopsis lyrata HOM05D000113 ORTHO05D008110 3.8e-40 167.9 99 81.8
CARHR143070 Cardamine hirsuta HOM05D000113 ORTHO05D008110 3.6e-38 161.4 99 79.8
AT2G47680 Arabidopsis thaliana HOM05D000113 ORTHO05D008110 4.7e-38 161.0 99 79.8
Thhalv10001290m.g Eutrema salsugineum HOM05D000113 ORTHO05D008110 3.7e-35 151.4 99 80.8
Atru.chr5.1152 Acer truncatum HOM05D000113 ORTHO05D008110 5.9e-33 144.1 99 68.7
Nn3g21480 Nelumbo nucifera HOM05D000113 ORTHO05D008110 1.3e-32 142.9 96 69.8
Sc24g0003800 Simmondsia chinensis HOM05D000113 ORTHO05D008110 6.6e-32 140.6 96 67.7
Thecc.01G299800 Theobroma cacao HOM05D000113 ORTHO05D008110 6.6e-32 140.6 98 66.3
Ciclev10018660m.g Citrus clementina HOM05D000113 ORTHO05D008110 8.6e-32 140.2 99 66.7
Duzib138G1325 Durio zibethinus HOM05D000113 ORTHO05D008110 5.6e-31 137.5 98 66.3
Dinv19697 Davidia involucrata HOM05D000113 ORTHO05D008110 7.3e-31 137.1 96 68.8
CiPaw.07G108300 Carya illinoinensis HOM05D000113 ORTHO05D008110 1.2e-30 136.3 99 63.6
Haze_04932 Corylus avellana HOM05D000113 ORTHO05D008110 1.6e-30 136.0 96 66.7
COL.COLO4_23351 Corchorus olitorius HOM05D000113 ORTHO05D008110 2.1e-30 135.6 97 62.9
Gohir.A12G130600 Gossypium hirsutum HOM05D000113 ORTHO05D008110 3.6e-30 134.8 98 63.3
Aqoxy5G00751 Aquilegia oxysepala HOM05D000113 ORTHO05D008110 4.7e-30 134.4 96 64.6
Cfa005918 Carpinus fangiana HOM05D000113 ORTHO05D008110 6.1e-30 134.0 96 65.6
QL12p028521 Quercus lobata HOM05D000113 ORTHO05D008110 1.4e-29 132.9 95 66.3
Gohir.D12G134400 Gossypium hirsutum HOM05D000113 ORTHO05D008110 3.0e-29 131.7 98 62.2
Gorai.008G145400 Gossypium raimondii HOM05D000113 ORTHO05D008110 3.0e-29 131.7 98 62.2
Potri.017G031800 Populus trichocarpa HOM05D000113 ORTHO05D008110 3.0e-29 131.7 97 64.9
Prupe.8G260900 Prunus persica HOM05D000113 ORTHO05D008110 3.0e-29 131.7 98 61.2
TAR365G0742 Trochodendron aralioides HOM05D000113 ORTHO05D008110 3.0e-29 131.7 97 67.0
TWI23G0215 Tripterygium wilfordii HOM05D000113 ORTHO05D008110 6.8e-29 130.6 95 63.2
Manes.01G218500 Manihot esculenta HOM05D000113 ORTHO05D008110 8.9e-29 130.2 97 61.9
PSO170G4966 Papaver somniferum HOM05D000113 ORTHO05D008110 8.9e-29 130.2 96 66.7
PSO407G0393 Papaver somniferum HOM05D000113 ORTHO05D008110 8.9e-29 130.2 96 66.7
Lj2A1194T51 Lonicera japonica HOM05D000113 ORTHO05D008110 2.0e-28 129.0 96 61.5
PSO170G4996 Papaver somniferum HOM05D000113 ORTHO05D008110 2.6e-28 128.6 97 64.9
TAR636G2876 Trochodendron aralioides HOM05D000113 ORTHO05D008110 5.7e-28 127.5 97 61.9
THA.LOC104817498 Tarenaya hassleriana HOM05D000113 ORTHO05D008110 7.5e-28 127.1 89 68.5
CsaV3_4G000770 Cucumis sativus L. HOM05D000113 ORTHO05D008110 1.7e-27 125.9 97 60.8
EL10Ac7g17516 Beta vulgaris HOM05D000113 ORTHO05D008110 3.7e-27 124.8 97 60.8
MELO3C017959.2 Cucumis melo HOM05D000113 ORTHO05D008110 8.3e-27 123.6 97 60.8
ECA236G2215 Erigeron canadensis HOM05D000113 ORTHO05D008110 8.3e-27 123.6 97 58.8
Cc01_g20800 Coffea canephora HOM05D000113 ORTHO05D008110 1.1e-26 123.2 97 57.7
FvH4_2g25691 Fragaria vesca HOM05D000113 ORTHO05D008110 1.4e-26 122.9 97 61.9
FAN20G1487 Fragaria x ananassa HOM05D000113 ORTHO05D008110 1.4e-26 122.9 97 59.8
FAN24G2368 Fragaria x ananassa HOM05D000113 ORTHO05D008110 1.4e-26 122.9 97 61.9
HanXRQChr06g0163801 Helianthus annuus HOM05D000113 ORTHO05D008110 1.4e-26 122.9 97 56.7
ClCG10G010890 Citrullus lanatus HOM05D000113 ORTHO05D008110 2.4e-26 122.1 97 58.8
SalBow3G0505 Salvia bowleyana HOM05D000113 ORTHO05D008110 2.4e-26 122.1 96 58.3
FAN15G1622 Fragaria x ananassa HOM05D000113 ORTHO05D008110 3.2e-26 121.7 97 59.8
HanXRQChr04g0114511 Helianthus annuus HOM05D000113 ORTHO05D008110 3.2e-26 121.7 97 57.7
Sed0019854 Sechium edule HOM05D000113 ORTHO05D008110 3.2e-26 121.7 95 60.0
GSVIVG01027995001 Vitis vinifera HOM05D000113 ORTHO05D008110 3.2e-26 121.7 96 60.4
Sabra17G0020300 Salix brachista HOM05D000113 ORTHO05D008110 5.4e-26 120.9 96 60.4
RcHm_v2.0_Chr6g0293951 Rosa chinensis HOM05D000113 ORTHO05D008110 7.0e-26 120.6 95 62.1
Cpa.g.sc9.265 Carica papaya HOM05D000113 ORTHO05D008110 9.2e-26 120.2 97 59.8
C04p39570 Brassica napus HOM05D000113 ORTHO05D027285 1.6e-25 119.4 100 66.0
AUR62033138 Chenopodium quinoa HOM05D000113 ORTHO05D008110 1.6e-25 119.4 97 56.7
SGA_v2.0_scaffold2G01396 Striga asiatica HOM05D000113 ORTHO05D008110 1.6e-25 119.4 98 60.2
MD03G1287700 Malus domestica HOM05D000113 ORTHO05D008110 3.5e-25 118.2 91 61.5
Oeu046683.2 Olea europaea HOM05D000113 ORTHO05D008110 7.8e-25 117.1 96 59.4
AUR62008633 Chenopodium quinoa HOM05D000113 ORTHO05D008110 1.3e-24 116.3 97 54.6
MSTRG.18154 Avicennia marina HOM05D000113 ORTHO05D008110 1.7e-24 115.9 96 55.2
CSS0020045 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D008110 1.7e-24 115.9 97 57.7
Ah.08g213060 Amaranthus hybridus HOM05D000113 ORTHO05D008110 2.3e-24 115.5 96 57.3
Rhsim01G0284800 Rhododendron simsii HOM05D000113 ORTHO05D008110 1.1e-23 113.2 92 57.6
Hund18150 Selenicereus undatus HOM05D000113 ORTHO05D008110 1.1e-23 113.2 96 53.1
BcaC02g12608 Brassica carinata HOM05D000113 ORTHO05D027285 1.9e-23 112.5 59 88.1
Psat6g166080 Pisum sativum HOM05D000113 ORTHO05D008110 2.5e-23 112.1 96 57.3
PGR044G1807 Punica granatum HOM05D000113 ORTHO05D008110 2.5e-23 112.1 97 55.7
Migut.D00214 Erythranthe guttata HOM05D000113 ORTHO05D008110 3.3e-23 111.7 96 54.2
Medtr1g088590 Medicago truncatula HOM05D000113 ORTHO05D008110 4.3e-23 111.3 96 55.2
TPR.G33994 Trifolium pratense HOM05D000113 ORTHO05D008110 5.6e-23 110.9 96 54.2
Lalb_Chr06g0163501 Lupinus albus HOM05D000113 ORTHO05D008110 9.5e-23 110.2 98 54.1
Peaxi162Scf00399g00810 Petunia axillaris HOM05D000113 ORTHO05D008110 1.2e-22 109.8 96 53.1
Migut.B01151 Erythranthe guttata HOM05D000113 ORTHO05D008110 1.6e-22 109.4 97 52.6
Lj5g0009328 Lotus japonicus HOM05D000113 ORTHO05D008110 2.1e-22 109.0 96 56.2
DCAR_002827 Daucus carota HOM05D000113 ORTHO05D008110 2.8e-22 108.6 98 56.1
Ca_10340_v3 Cicer arietinum L. HOM05D000113 ORTHO05D008110 3.6e-22 108.2 96 54.2
Lsat_1_v5_gn_8_163500 Lactuca sativa HOM05D000113 ORTHO05D008110 4.7e-22 107.8 98 52.0
Eucgr.K03481 Eucalyptus grandis HOM05D000113 ORTHO05D008110 6.2e-22 107.5 97 52.6
Eucgr.K03483 Eucalyptus grandis HOM05D000113 ORTHO05D008110 1.1e-21 106.7 97 52.6
Sopen06g003870 Solanum pennellii HOM05D000113 ORTHO05D008110 1.1e-21 106.7 96 55.2
Solyc06g009070.3 Solanum lycopersicum HOM05D000113 ORTHO05D008110 1.8e-21 105.9 95 55.8
CAN.G1989.5 Capsicum annuum HOM05D000113 ORTHO05D008110 2.3e-21 105.5 95 52.6
Eucgr.K03485 Eucalyptus grandis HOM05D000113 ORTHO05D008110 4.0e-21 104.8 97 51.5
ATR0796G147 Amborella trichopoda HOM05D000113 ORTHO05D008110 1.5e-20 102.8 96 49.0
unitig_22.g5242 Utricularia gibba HOM05D000113 ORTHO05D008110 1.5e-20 102.8 96 49.0
Actinidia24825 Actinidia chinensis HOM05D000113 ORTHO05D008110 2.0e-20 102.4 79 59.5
Eucgr.K03477 Eucalyptus grandis HOM05D000113 ORTHO05D008110 2.0e-20 102.4 99 48.5
Eucgr.K03484 Eucalyptus grandis HOM05D000113 ORTHO05D008110 2.0e-20 102.4 97 48.5
arahy.Tifrunner.gnm1.ann1.94GFRR Arachis hypogaea HOM05D000113 ORTHO05D008110 5.8e-20 100.9 97 49.5
CDE05G0518 Ceratophyllum demersum HOM05D000113 ORTHO05D008110 5.8e-20 100.9 96 52.1
Nitab4.5_0002470g0060 Nicotiana tabacum HOM05D000113 ORTHO05D008110 5.8e-20 100.9 94 52.1
Nitab4.5_0005805g0010 Nicotiana tabacum HOM05D000113 ORTHO05D008110 5.8e-20 100.9 94 52.1
HPP92_000109 Vanilla planifolia HOM05D000113 ORTHO05D008110 1.7e-19 99.4 97 46.4
Zm00001eb333510 Zea mays HOM05D000113 ORTHO05D008110 2.9e-19 98.6 99 48.5
arahy.Tifrunner.gnm1.ann1.BY1460 Arachis hypogaea HOM05D000113 ORTHO05D008110 3.7e-19 98.2 97 48.5
Os01g0256800 Oryza sativa ssp. japonica HOM05D000113 ORTHO05D008110 6.4e-19 97.4 99 47.5
Actinidia21050 Actinidia chinensis HOM05D000113 ORTHO05D008110 1.4e-18 96.3 81 56.8
BolC4t25521H Brassica oleracea HOM05D000113 ORTHO05D027285 1.3e-16 89.7 82 61.0


User provided reference genes

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