Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06672 Brassica carinata HOM05D001849 ORTHO05D004689 1.1e-47 193.0 101 100.0
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 7.4e-31 137.1 212 45.3
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 2.8e-30 135.2 212 44.8
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 8.2e-30 133.7 212 44.3
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 1.4e-29 132.9 212 43.9
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 1.4e-29 132.9 212 43.9
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 1.4e-29 132.9 211 44.1
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 2.4e-29 132.1 223 42.6
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 6.9e-29 130.6 212 43.4
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 2.6e-28 128.6 212 43.4
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 7.7e-28 127.1 212 42.9
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 1.0e-27 126.7 210 42.4
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 1.3e-27 126.3 212 42.5
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 8.5e-27 123.6 212 42.5
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 1.0e-24 116.7 237 38.4
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 5.1e-24 114.4 210 39.0
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 9.1e-21 103.6 209 36.4
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 1.5e-20 102.8 210 35.2
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 3.4e-20 101.7 207 36.7
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 4.5e-20 101.3 210 35.2
BolC2t10453H Brassica oleracea HOM05D001849 ORTHO05D004689 7.7e-20 100.5 55 94.5
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 1.0e-19 100.1 210 34.8
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 1.0e-19 100.1 210 36.2
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 2.9e-19 98.6 209 34.9
C02p44100 Brassica napus HOM05D001849 ORTHO05D004689 3.2e-18 95.1 55 90.9
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 3.2e-18 95.1 210 34.8
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 5.5e-18 94.4 210 34.3
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 7.2e-18 94.0 208 33.2
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 9.4e-18 93.6 210 33.8
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 1.2e-17 93.2 209 34.9
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 1.6e-17 92.8 63 76.2
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 4.7e-17 91.3 211 33.6
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 6.1e-17 90.9 210 34.3
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 7.9e-17 90.5 210 33.3
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.0e-16 90.1 208 34.1
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 1.0e-16 90.1 63 73.0
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 1.4e-16 89.7 210 32.9
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 1.8e-16 89.4 207 32.4
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 2.3e-16 89.0 195 32.8
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 3.0e-16 88.6 63 73.0
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 8.8e-16 87.0 210 32.9
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 8.8e-16 87.0 63 71.4
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 8.8e-16 87.0 209 33.0
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 1.5e-15 86.3 212 32.5
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 1.5e-15 86.3 63 71.4
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 2.0e-15 85.9 207 32.9
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.6e-15 85.5 208 32.7
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 3.3e-15 85.1 206 31.6
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 3.3e-15 85.1 210 31.4
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 5.7e-15 84.3 210 32.9
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 7.4e-15 84.0 209 33.0
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 1.7e-14 82.8 206 32.5
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 1.7e-14 82.8 209 31.1
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 2.2e-14 82.4 188 34.6
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 6.3e-14 80.9 60 66.7
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 8.2e-14 80.5 208 32.2
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 8.2e-14 80.5 70 64.3
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 1.4e-13 79.7 71 59.2
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 1.4e-13 79.7 210 30.5
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 1.8e-13 79.3 60 66.7
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 1.8e-13 79.3 210 29.5
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 2.4e-13 79.0 207 32.4
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 2.4e-13 79.0 207 30.0
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 2.4e-13 79.0 207 30.9
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 3.1e-13 78.6 66 60.6
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 4.1e-13 78.2 207 31.9
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 4.1e-13 78.2 207 31.9
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 4.1e-13 78.2 210 29.0
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 4.1e-13 78.2 207 31.9
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 7.0e-13 77.4 206 29.6
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 1.2e-12 76.6 66 62.1
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 1.6e-12 76.3 208 30.3
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 1.6e-12 76.3 207 30.9
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 1.6e-12 76.3 207 30.9
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 2.6e-12 75.5 207 30.9
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 4.5e-12 74.7 207 30.9
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 5.9e-12 74.3 233 30.0
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 1.0e-11 73.6 206 28.6
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.0e-11 73.6 211 28.9
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 1.3e-11 73.2 188 31.4
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 1.3e-11 73.2 94 51.1
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 8.5e-11 70.5 207 31.9
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 1.1e-10 70.1 192 29.7
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 1.5e-10 69.7 207 29.0
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 2.5e-10 68.9 209 30.1
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 4.2e-10 68.2 56 66.1
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 4.2e-10 68.2 207 29.0
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 4.2e-10 68.2 206 29.1
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 1.6e-09 66.2 45 77.8
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 2.7e-09 65.5 202 27.7
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 2.7e-09 65.5 206 27.7
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 4.7e-09 64.7 206 27.7
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 4.7e-09 64.7 205 28.8
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 4.7e-09 64.7 206 28.2
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 1.0e-08 63.5 62 58.1
CSS0002239 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.3e-08 62.4 39 79.5
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 2.3e-08 62.4 44 61.4
CSS0017686 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.0e-08 62.0 66 53.0
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 3.0e-08 62.0 34 82.4
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 4.0e-08 61.6 43 65.1
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 6.7e-08 60.8 35 77.1
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 6.7e-08 60.8 43 67.4
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 6.7e-08 60.8 211 28.0
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 8.8e-08 60.5 43 62.8
CSS0047517 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.5e-07 59.7 35 74.3
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.0e-07 59.3 43 62.8
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 5.7e-07 57.8 43 65.1
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 6.3e-06 54.3 33 72.7


User provided reference genes

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