Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 0.0e+00 1377.5 780 100.0
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 0.0e+00 1338.6 808 95.7
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 0.0e+00 1296.2 805 91.7
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 0.0e+00 1210.3 846 84.2
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 0.0e+00 1201.8 847 84.7
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 2.2e-239 832.8 896 59.6
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 7.3e-235 817.8 853 58.6
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 9.9e-224 780.8 835 57.8
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 9.6e-211 737.6 856 56.4
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 1.5e-208 730.3 834 55.2
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 5.1e-204 715.3 849 54.9
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 1.5e-184 650.6 820 52.3
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 5.7e-155 552.4 849 45.5
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 6.7e-148 528.9 843 45.8
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 4.2e-142 509.6 849 43.9
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 2.2e-138 497.3 823 43.7
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 6.8e-116 422.5 849 37.8
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 5.8e-115 419.5 828 38.0
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 9.8e-115 418.7 825 37.3
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 1.7e-114 417.9 826 37.0
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 2.1e-112 411.0 830 36.3
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 2.1e-112 411.0 828 37.6
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 4.6e-112 409.8 828 37.0
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 4.6e-112 409.8 824 36.5
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 6.0e-112 409.5 827 37.6
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 6.0e-112 409.5 837 37.6
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 1.3e-111 408.3 821 36.5
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 6.6e-111 406.0 826 37.7
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 2.5e-110 404.1 823 37.3
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 4.3e-110 403.3 824 34.3
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 4.3e-110 403.3 835 37.2
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 7.3e-110 402.5 823 36.7
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 1.2e-109 401.7 827 36.4
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 2.3e-108 397.5 821 36.7
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 2.3e-108 397.5 824 37.1
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 5.2e-108 396.4 824 35.9
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 6.8e-108 396.0 826 36.3
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 8.9e-108 395.6 834 35.4
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 3.4e-107 393.7 803 36.9
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 3.4e-107 393.7 832 35.3
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 1.3e-106 391.7 819 36.6
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 3.7e-106 390.2 816 35.9
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 4.9e-106 389.8 827 37.1
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 1.4e-105 388.3 826 36.1
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 5.4e-105 386.3 824 36.2
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 2.7e-104 384.0 818 35.5
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 3.5e-104 383.6 834 36.7
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 3.5e-104 383.6 828 35.6
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 3.0e-103 380.6 824 35.9
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 3.0e-103 380.6 825 35.0
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 3.9e-103 380.2 862 33.8
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 3.3e-102 377.1 827 35.8
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 5.6e-102 376.3 816 33.7
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 1.2e-101 375.2 825 38.1
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 3.6e-101 373.6 823 35.1
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 3.6e-101 373.6 821 34.7
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 6.2e-101 372.9 819 34.1
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 8.1e-101 372.5 835 34.3
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 1.1e-100 372.1 816 34.6
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 1.1e-100 372.1 817 36.1
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 1.4e-100 371.7 825 36.6
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 3.1e-100 370.5 828 34.4
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 8.9e-100 369.0 808 34.5
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 7.6e-99 365.9 826 34.7
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 2.2e-98 364.4 828 34.5
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 2.9e-98 364.0 815 35.0
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 2.7e-96 357.5 823 34.9
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 4.6e-96 356.7 819 34.2
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 4.6e-96 356.7 831 33.6
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 1.5e-94 351.7 819 34.1
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 5.6e-94 349.7 798 34.8
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 1.6e-93 348.2 777 35.5
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 3.6e-93 347.1 821 33.3
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 4.0e-92 343.6 874 33.5
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 5.3e-92 343.2 819 33.7
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 9.0e-92 342.4 826 34.1
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 3.4e-91 340.5 885 32.9
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 1.3e-90 338.6 816 33.6
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 1.2e-88 332.0 830 34.1
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 1.3e-87 328.6 825 32.8
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.6e-85 321.6 883 32.5
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 3.6e-85 320.5 883 32.4
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 4.8e-85 320.1 817 31.6
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 8.1e-85 319.3 823 31.3
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 2.6e-83 314.3 793 34.0
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 3.4e-83 313.9 824 33.3
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.7e-82 311.6 814 32.2
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 6.4e-82 309.7 833 33.0
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 3.2e-81 307.4 824 31.4
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 5.4e-81 306.6 821 30.8
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 3.5e-80 303.9 774 32.3
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 1.3e-79 302.0 823 29.8
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.8e-79 301.6 875 31.3
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 3.9e-79 300.4 322 52.2
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 1.1e-78 298.9 825 31.5
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 8.1e-77 292.7 819 30.9
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 4.9e-74 283.5 737 32.7
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 1.4e-73 282.0 809 30.5
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 2.1e-72 278.1 791 30.7
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 2.1e-72 278.1 786 30.5
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 1.9e-70 271.6 770 31.6
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 8.2e-69 266.2 805 29.8
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 3.4e-67 260.8 802 30.3
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 6.9e-60 236.5 814 28.3
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 3.4e-59 234.2 801 30.5
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 1.7e-58 231.9 662 31.0
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 3.9e-55 220.7 720 29.0
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.1e-54 219.2 375 39.7
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 7.4e-54 216.5 172 68.6
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 7.4e-54 216.5 172 68.6
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 1.1e-41 176.0 227 46.3
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.7e-40 171.4 293 37.5
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 2.3e-39 168.3 307 35.8
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 6.7e-39 166.8 817 24.7
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.5e-38 165.6 268 36.6
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 9.1e-36 156.4 203 44.3
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 2.2e-34 151.8 926 23.5
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 2.5e-33 148.3 315 32.7
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 3.2e-33 147.9 756 24.2
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 2.4e-28 131.7 204 37.7
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 7.2e-25 120.2 419 25.5
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 4.9e-21 107.5 174 40.2
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 1.4e-20 105.9 315 33.7
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.6e-16 92.4 82 52.4
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 2.3e-15 88.6 253 33.2
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 1.5e-14 85.9 91 46.2
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 4.4e-14 84.3 126 42.1
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 3.7e-13 81.3 82 48.8
BolC2t11589H Brassica oleracea HOM05D001350 ORTHO05D001091 5.0e-10 70.9 102 48.0
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 3.3e-09 68.2 89 42.7
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 4.7e-08 64.3 113 40.7
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 2.0e-06 58.9 159 37.1


User provided reference genes

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