Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06153 Brassica carinata HOM05D006776 ORTHO05D007603 4.3e-253 877.5 434 100.0
C05p26470 Brassica napus HOM05D006776 ORTHO05D007603 1.2e-242 842.8 451 94.0
BolC5t31368H Brassica oleracea HOM05D006776 ORTHO05D007603 2.1e-239 832.0 452 93.6
A09p38320 Brassica napus HOM05D006776 ORTHO05D007603 2.5e-232 808.5 451 90.2
BraA09t39342Z Brassica rapa HOM05D006776 ORTHO05D007603 1.8e-230 802.4 452 89.6
BcaNung06155 Brassica carinata HOM05D006776 ORTHO05D007603 1.3e-228 796.2 452 89.2
Sp1g24040 Schrenkiella parvula HOM05D006776 ORTHO05D007603 1.9e-216 755.7 451 83.6
AL1G41330 Arabidopsis lyrata HOM05D006776 ORTHO05D007603 2.5e-208 728.8 452 81.6
AT1G27840 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 1.6e-207 726.1 452 80.5
CARHR027300 Cardamine hirsuta HOM05D006776 ORTHO05D007603 2.0e-205 719.2 451 80.0
Thhalv10007615m.g Eutrema salsugineum HOM05D006776 ORTHO05D007603 1.1e-200 703.4 451 79.6
THA.LOC104814190 Tarenaya hassleriana HOM05D006776 ORTHO05D007603 6.1e-191 671.0 460 74.3
Aa31sc113G60 Aethionema arabicum HOM05D006776 ORTHO05D007603 3.0e-190 668.7 488 71.1
BcaC05g26777 Brassica carinata HOM05D006776 ORTHO05D007603 2.1e-183 646.0 453 77.3
Prupe.1G422900 Prunus persica HOM05D006776 ORTHO05D007603 1.6e-170 603.2 450 69.1
Cpa.g.sc142.25 Carica papaya HOM05D006776 ORTHO05D007603 3.0e-169 599.0 442 68.1
Manes.05G181900 Manihot esculenta HOM05D006776 ORTHO05D007603 3.0e-169 599.0 455 67.9
MD15G1070100 Malus domestica HOM05D006776 ORTHO05D007603 9.5e-168 594.0 453 66.9
Thecc.08G088800 Theobroma cacao HOM05D006776 ORTHO05D007603 6.2e-167 591.3 455 66.4
CiPaw.07G175000 Carya illinoinensis HOM05D006776 ORTHO05D007603 8.0e-167 590.9 445 67.2
CsaV3_2G026140 Cucumis sativus L. HOM05D006776 ORTHO05D007603 2.3e-166 589.3 454 67.4
RcHm_v2.0_Chr6g0309581 Rosa chinensis HOM05D006776 ORTHO05D007603 3.1e-166 589.0 452 66.8
Atru.chr13.832 Acer truncatum HOM05D006776 ORTHO05D007603 5.2e-166 588.2 439 67.4
Gohir.D05G213300 Gossypium hirsutum HOM05D006776 ORTHO05D007603 5.2e-166 588.2 455 66.8
FAN15G0723 Fragaria x ananassa HOM05D006776 ORTHO05D007603 8.9e-166 587.4 452 66.6
TAR376G1186 Trochodendron aralioides HOM05D006776 ORTHO05D007603 1.2e-165 587.0 459 64.9
FAN20G0940 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.5e-165 586.6 452 66.4
Gohir.A05G210000 Gossypium hirsutum HOM05D006776 ORTHO05D007603 2.0e-165 586.3 455 66.4
Dinv39223 Davidia involucrata HOM05D006776 ORTHO05D007603 2.6e-165 585.9 459 65.1
CANSAT21G2159 Cannabis sativa HOM05D006776 ORTHO05D007603 7.5e-165 584.3 452 67.0
FvH4_2g33100 Fragaria vesca HOM05D006776 ORTHO05D007603 7.5e-165 584.3 452 66.2
FAN24G3456 Fragaria x ananassa HOM05D006776 ORTHO05D007603 9.8e-165 583.9 452 66.2
COL.COLO4_28506 Corchorus olitorius HOM05D006776 ORTHO05D007603 1.3e-164 583.6 455 65.9
FAN27G1522 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.1e-163 580.5 452 65.0
Ciclev10001152m.g Citrus clementina HOM05D006776 ORTHO05D007603 1.9e-163 579.7 450 64.9
arahy.Tifrunner.gnm1.ann1.YEFH3D Arachis hypogaea HOM05D006776 ORTHO05D007603 2.4e-163 579.3 453 65.1
Actinidia08248 Actinidia chinensis HOM05D006776 ORTHO05D007603 4.1e-163 578.6 460 64.8
MELO3C010806.2 Cucumis melo HOM05D006776 ORTHO05D007603 5.4e-163 578.2 460 66.1
VMungo1309G0963 Vigna mungo HOM05D006776 ORTHO05D007603 7.0e-163 577.8 443 66.1
CSS0038791 Camellia sinensis var. sinensis HOM05D006776 ORTHO05D007603 9.2e-163 577.4 456 64.3
Glyma.06G046400 Glycine max HOM05D006776 ORTHO05D007603 2.7e-162 575.9 443 66.1
arahy.Tifrunner.gnm1.ann1.SBJ000 Arachis hypogaea HOM05D006776 ORTHO05D007603 3.5e-162 575.5 449 64.8
Lalb_Chr11g0062871 Lupinus albus HOM05D006776 ORTHO05D007603 7.8e-162 574.3 442 65.8
Oeu053611.1 Olea europaea HOM05D006776 ORTHO05D007603 1.3e-161 573.5 458 64.2
EL10Ac1g02384 Beta vulgaris HOM05D006776 ORTHO05D007603 3.0e-161 572.4 459 64.5
Glyma.04G045700 Glycine max HOM05D006776 ORTHO05D007603 3.0e-161 572.4 447 66.0
Rhsim07G0219900 Rhododendron simsii HOM05D006776 ORTHO05D007603 3.9e-161 572.0 459 62.5
ClCG08G016470 Citrullus lanatus HOM05D006776 ORTHO05D007603 5.1e-161 571.6 438 67.1
Sed0026542 Sechium edule HOM05D006776 ORTHO05D007603 8.6e-161 570.9 432 67.6
Ca_15900_v3 Cicer arietinum L. HOM05D006776 ORTHO05D007603 1.5e-160 570.1 438 65.3
Lj1g0026753 Lotus japonicus HOM05D006776 ORTHO05D007603 1.5e-160 570.1 443 65.0
PGR083G0271 Punica granatum HOM05D006776 ORTHO05D007603 1.9e-160 569.7 454 64.1
GSVIVG01009344001 Vitis vinifera HOM05D006776 ORTHO05D007603 2.5e-160 569.3 459 63.8
Nn1g04555 Nelumbo nucifera HOM05D006776 ORTHO05D007603 9.5e-160 567.4 457 63.5
Phvul.009G071700 Phaseolus vulgaris HOM05D006776 ORTHO05D007603 9.5e-160 567.4 450 64.2
QL12p038088 Quercus lobata HOM05D006776 ORTHO05D007603 9.5e-160 567.4 493 60.0
PGSC0003DMG400011544 Solanum tuberosum HOM05D006776 ORTHO05D007603 1.6e-159 566.6 457 64.1
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 2.1e-159 566.2 442 64.7
Cfa013778 Carpinus fangiana HOM05D006776 ORTHO05D007603 3.6e-159 565.5 448 63.8
MSTRG.22221 Avicennia marina HOM05D006776 ORTHO05D007603 4.7e-159 565.1 453 63.6
Cc10_g05780 Coffea canephora HOM05D006776 ORTHO05D007603 4.7e-159 565.1 461 62.7
Eucgr.F00083 Eucalyptus grandis HOM05D006776 ORTHO05D007603 6.2e-159 564.7 453 63.8
Potri.014G016100 Populus trichocarpa HOM05D006776 ORTHO05D007603 6.2e-159 564.7 458 65.3
Hund23872 Selenicereus undatus HOM05D006776 ORTHO05D007603 1.1e-158 563.9 456 63.2
Migut.N02781 Erythranthe guttata HOM05D006776 ORTHO05D007603 4.0e-158 562.0 458 62.4
Solyc12g088340.2 Solanum lycopersicum HOM05D006776 ORTHO05D007603 4.0e-158 562.0 457 63.9
Lsat_1_v5_gn_4_131640 Lactuca sativa HOM05D006776 ORTHO05D007603 5.2e-158 561.6 457 62.1
PSO170G0170 Papaver somniferum HOM05D006776 ORTHO05D007603 8.9e-158 560.8 458 62.7
Sopen12g030330 Solanum pennellii HOM05D006776 ORTHO05D007603 1.2e-157 560.5 457 63.7
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 1.5e-157 560.1 441 63.5
PSO017G0681 Papaver somniferum HOM05D006776 ORTHO05D007603 3.4e-157 558.9 458 62.4
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 9.9e-157 557.4 444 63.1
TWI56G0429 Tripterygium wilfordii HOM05D006776 ORTHO05D007603 3.7e-156 555.4 446 64.6
Nitab4.5_0002314g0100 Nicotiana tabacum HOM05D006776 ORTHO05D007603 8.3e-156 554.3 454 62.8
Aqoxy5G00870 Aquilegia oxysepala HOM05D006776 ORTHO05D007603 1.4e-155 553.5 458 60.9
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 4.1e-155 552.0 450 62.2
HanXRQChr09g0266761 Helianthus annuus HOM05D006776 ORTHO05D007603 4.1e-155 552.0 451 62.1
Nitab4.5_0008551g0030 Nicotiana tabacum HOM05D006776 ORTHO05D007603 9.2e-155 550.8 428 65.4
Hma1.2p1_0819F.1_g223710 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 7.8e-154 547.7 430 62.6
DCAR_012816 Daucus carota HOM05D006776 ORTHO05D007603 2.3e-153 546.2 455 62.0
Gorai.009G219900 Gossypium raimondii HOM05D006776 ORTHO05D007603 3.9e-153 545.4 415 67.7
unitig_578.g16149 Utricularia gibba HOM05D006776 ORTHO05D007603 1.9e-152 543.1 449 61.0
Sabra14G0010000 Salix brachista HOM05D006776 ORTHO05D007603 5.6e-152 541.6 459 63.4
CDE04G2973 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 7.3e-152 541.2 454 61.0
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 4.7e-151 538.5 510 55.5
HPP92_001976 Vanilla planifolia HOM05D006776 ORTHO05D007603 8.1e-151 537.7 454 60.1
Ah.11g042830 Amaranthus hybridus HOM05D006776 ORTHO05D007603 2.4e-150 536.2 458 60.0
Haze_22436 Corylus avellana HOM05D006776 ORTHO05D007603 1.7e-148 530.0 402 66.4
AT1G19750 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 8.4e-148 527.7 335 80.6
Lj4A758G74 Lonicera japonica HOM05D006776 ORTHO05D007603 2.1e-146 523.1 418 61.5
Peaxi162Scf00160g00527 Petunia axillaris HOM05D006776 ORTHO05D007603 8.7e-145 517.7 436 62.4
ATR0820G216 Amborella trichopoda HOM05D006776 ORTHO05D007603 4.3e-144 515.4 454 58.4
Zm00001eb147340 Zea mays HOM05D006776 ORTHO05D007603 2.8e-143 512.7 448 57.8
Sc15g0005690 Simmondsia chinensis HOM05D006776 ORTHO05D007603 2.0e-141 506.5 409 61.4
Duzib116G0586 Durio zibethinus HOM05D006776 ORTHO05D007603 6.0e-138 495.0 387 65.4
AUR62038776 Chenopodium quinoa HOM05D006776 ORTHO05D007603 4.0e-134 482.3 395 62.5
Carub.0001s2630 Capsella rubella HOM05D006776 ORTHO05D007603 6.9e-134 481.5 309 80.9
Hma1.2p1_0819F.1_g223700 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 1.1e-131 474.2 386 62.2
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 4.0e-118 429.1 462 48.5
vmacro22055 Vaccinium macrocarpon HOM05D006776 ORTHO05D007603 2.6e-117 426.4 372 59.1
Pp3c22_5850 Physcomitrium patens HOM05D006776 ORTHO05D007603 4.2e-115 419.1 456 47.4
MD08G1082700 Malus domestica HOM05D006776 ORTHO05D007603 1.6e-111 407.1 368 59.2
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 2.2e-111 406.8 449 47.9
SMO203G0215 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 3.6e-106 389.4 440 46.1
AUR62037473 Chenopodium quinoa HOM05D006776 ORTHO05D007603 5.7e-96 355.5 299 61.5
CDE02G3909 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 7.4e-96 355.1 378 51.3
CBR_g4873 Chara braunii HOM05D006776 ORTHO05D007603 6.1e-90 335.5 516 39.3
SMO353G0131 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 4.8e-87 325.9 445 42.5
SEGI_38356 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 1.8e-70 270.8 207 62.3
MD08G1084000 Malus domestica HOM05D006776 ORTHO05D007603 5.9e-69 265.8 240 62.1
Os02g0307200 Oryza sativa ssp. japonica HOM05D006776 ORTHO05D007603 1.8e-65 254.2 191 65.4
MCO02G266 Micromonas commoda HOM05D006776 ORTHO05D007603 1.3e-60 238.0 442 36.0
SEGI_36074 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 2.7e-53 213.8 222 49.5
Lsat_1_v5_gn_7_88960 Lactuca sativa HOM05D006776 ORTHO05D007603 4.7e-34 149.8 109 65.1
PRCOL_00002749 Prasinoderma coloniale HOM05D006776 ORTHO05D007603 3.2e-30 137.1 466 26.4
Cre01.g032100 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 1.0e-28 132.1 277 32.1
Cre01.g032139 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 1.0e-20 105.5 124 40.3
TAR383G0657 Trochodendron aralioides HOM05D003006 ORTHO05D003438 2.0e-08 64.7 196 27.6
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 4.5e-08 63.5 307 21.2
PRCOL_00005554 Prasinoderma coloniale HOM05D004736 ORTHO05D006424 4.5e-08 63.5 117 33.3
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 1.0e-07 62.4 130 26.9
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 1.0e-07 62.4 126 27.0
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 1.3e-07 62.0 319 20.1
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 1.7e-07 61.6 130 26.2
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 1.7e-07 61.6 130 26.2
ATR0580G338 Amborella trichopoda HOM05D000464 ORTHO05D006292 2.2e-07 61.2 318 23.6
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 2.9e-07 60.8 214 26.2
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 3.8e-07 60.5 130 26.2
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 3.8e-07 60.5 130 26.9
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 6.5e-07 59.7 133 26.3
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 6.5e-07 59.7 130 24.6
unitig_32.g11669 Utricularia gibba HOM05D000836 ORTHO05D000709 8.4e-07 59.3 141 27.0
Haze_19912 Corylus avellana HOM05D004736 ORTHO05D006424 1.1e-06 58.9 176 25.0
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 1.1e-06 58.9 122 26.2
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 1.1e-06 58.9 298 20.5
Cpa.g.sc1360.1 Carica papaya HOM05D000464 ORTHO05D000408 1.4e-06 58.5 146 27.4
AagrBONN_evm.TU.Sc2ySwM_344.121 Anthoceros agrestis HOM05D000464 ORTHO05D006292 1.9e-06 58.2 115 27.8
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 1.9e-06 58.2 118 26.3
arahy.Tifrunner.gnm1.ann1.I2WYER Arachis hypogaea HOM05D000836 ORTHO05D000709 2.5e-06 57.8 162 27.2
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 2.5e-06 57.8 317 20.2
Duzib093G0982 Durio zibethinus HOM05D004736 ORTHO05D006424 2.5e-06 57.8 112 29.5
Glyma.13G227200 Glycine max HOM05D004736 ORTHO05D006424 2.5e-06 57.8 115 30.4
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 2.5e-06 57.8 135 26.7
SEGI_15664 Sequoiadendron giganteum HOM05D003769 ORTHO05D004521 2.5e-06 57.8 122 27.9
unitig_748.g7364 Utricularia gibba HOM05D000836 ORTHO05D000709 2.5e-06 57.8 138 26.1
Aa31LG3G6060 Aethionema arabicum HOM05D000464 ORTHO05D006292 3.2e-06 57.4 130 25.4
Cpa.g.sc92.4 Carica papaya HOM05D004736 ORTHO05D006424 3.2e-06 57.4 113 29.2
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 3.2e-06 57.4 124 28.2
MCO06G049 Micromonas commoda HOM05D005508 ORTHO05D006882 3.2e-06 57.4 124 29.0
Ah.04g151930 Amaranthus hybridus HOM05D004736 ORTHO05D006424 4.2e-06 57.0 113 31.0
Medtr2g016690 Medicago truncatula HOM05D004736 ORTHO05D006424 4.2e-06 57.0 113 31.0
Oeu064319.1 Olea europaea HOM05D004736 ORTHO05D006424 4.2e-06 57.0 112 30.4
AUR62025989 Chenopodium quinoa HOM05D004736 ORTHO05D006424 5.5e-06 56.6 113 31.0
CANSAT21G1832 Cannabis sativa HOM05D004758 ORTHO05D006063 7.1e-06 56.2 179 22.9
Sed0000735 Sechium edule HOM05D004736 ORTHO05D006424 7.1e-06 56.2 113 31.9
EL10Ac3g07012 Beta vulgaris HOM05D004736 ORTHO05D006424 9.3e-06 55.8 113 30.1
COL.COLO4_28679 Corchorus olitorius HOM05D004736 ORTHO05D006424 9.3e-06 55.8 113 30.1
Nitab4.5_0000934g0230 Nicotiana tabacum HOM05D002634 ORTHO05D003100 9.3e-06 55.8 187 26.2
Peaxi162Scf00189g00319 Petunia axillaris HOM05D004736 ORTHO05D006424 9.3e-06 55.8 113 31.0
Solyc03g059310.3 Solanum lycopersicum HOM05D004736 ORTHO05D006424 9.3e-06 55.8 113 31.0
Sopen03g013810 Solanum pennellii HOM05D004736 ORTHO05D006424 9.3e-06 55.8 113 31.0


User provided reference genes

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