Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05084 Brassica carinata HOM05D001054 ORTHO05D007110 0.0e+00 1090.5 545 100.0
Sp7g35190 Schrenkiella parvula HOM05D001054 ORTHO05D007110 1.5e-290 1002.3 552 90.8
BolC1t00157H Brassica oleracea HOM05D001054 ORTHO05D007110 4.2e-290 1000.7 544 91.7
BcaNung03665 Brassica carinata HOM05D001054 ORTHO05D007110 9.4e-290 999.6 545 91.9
C01p01620 Brassica napus HOM05D001054 ORTHO05D007110 9.4e-290 999.6 545 91.9
Thhalv10024858m.g Eutrema salsugineum HOM05D001054 ORTHO05D007110 3.0e-288 994.6 550 90.0
BraA01t00139Z Brassica rapa HOM05D001054 ORTHO05D007110 9.1e-285 983.0 543 90.6
A01p01450 Brassica napus HOM05D001054 ORTHO05D007110 4.5e-284 980.7 543 90.4
AL7G13250 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 8.5e-283 976.5 544 88.8
CARHR245910 Cardamine hirsuta HOM05D001054 ORTHO05D007110 1.1e-282 976.1 548 89.1
Carub.0007s0278 Capsella rubella HOM05D001054 ORTHO05D007110 1.2e-281 972.6 547 87.9
Aa31LG6G14390 Aethionema arabicum HOM05D001054 ORTHO05D007110 4.7e-281 970.7 552 87.3
AT4G37510 Arabidopsis thaliana HOM05D001054 ORTHO05D007110 8.0e-281 969.9 545 88.6
THA.LOC104807624 Tarenaya hassleriana HOM05D001054 ORTHO05D007110 4.9e-270 934.1 545 84.0
Cpa.g.sc6.46 Carica papaya HOM05D001054 ORTHO05D007110 4.7e-257 891.0 549 79.8
Thecc.01G069100 Theobroma cacao HOM05D001054 ORTHO05D007110 2.1e-252 875.5 535 79.6
Gorai.008G080600 Gossypium raimondii HOM05D001054 ORTHO05D007110 6.6e-251 870.5 540 79.1
Gohir.D12G073300 Gossypium hirsutum HOM05D001054 ORTHO05D007110 4.3e-250 867.8 540 78.7
Nn7g37208 Nelumbo nucifera HOM05D001054 ORTHO05D007110 4.7e-249 864.4 542 77.5
MBI19_g10811_MAGBIO Magnolia biondii HOM05D001054 ORTHO05D007110 2.3e-248 862.1 535 77.6
TWI09G0178 Tripterygium wilfordii HOM05D001054 ORTHO05D007110 2.3e-248 862.1 542 76.9
Sed0014779 Sechium edule HOM05D001054 ORTHO05D007110 4.0e-248 861.3 538 76.8
TAR625G0225 Trochodendron aralioides HOM05D001054 ORTHO05D007110 5.2e-248 860.9 542 76.9
Oeu013280.1 Olea europaea HOM05D001054 ORTHO05D007110 3.4e-247 858.2 543 77.3
Sed0024674 Sechium edule HOM05D001054 ORTHO05D007110 3.4e-247 858.2 535 76.8
MSTRG.23690 Avicennia marina HOM05D001054 ORTHO05D007110 7.6e-247 857.1 527 78.4
CsaV3_6G043910 Cucumis sativus L. HOM05D001054 ORTHO05D007110 7.6e-247 857.1 538 76.6
ClCG01G017380 Citrullus lanatus HOM05D001054 ORTHO05D007110 9.9e-247 856.7 538 77.1
Duzib264G0621 Durio zibethinus HOM05D001054 ORTHO05D007110 1.7e-246 855.9 541 77.1
CANSAT01G2549 Cannabis sativa HOM05D001054 ORTHO05D007110 2.9e-246 855.1 543 76.4
Sopen10g030650 Solanum pennellii HOM05D001054 ORTHO05D007110 3.8e-246 854.7 546 76.4
Prupe.6G223800 Prunus persica HOM05D001054 ORTHO05D007110 4.9e-246 854.4 538 77.3
Solyc10g080040.3 Solanum lycopersicum HOM05D001054 ORTHO05D007110 4.9e-246 854.4 546 76.4
PGSC0003DMG400023692 Solanum tuberosum HOM05D001054 ORTHO05D007110 2.4e-245 852.0 546 76.2
Manes.13G113500 Manihot esculenta HOM05D001054 ORTHO05D007110 1.2e-244 849.7 537 76.5
FvH4_1g17270 Fragaria vesca HOM05D001054 ORTHO05D007110 2.1e-244 849.0 535 76.6
MELO3C007616.2 Cucumis melo HOM05D001054 ORTHO05D007110 2.7e-244 848.6 564 73.6
SalBow6G1211 Salvia bowleyana HOM05D001054 ORTHO05D007110 3.5e-244 848.2 543 75.7
Atru.chr3.194 Acer truncatum HOM05D001054 ORTHO05D007110 7.8e-244 847.0 542 76.2
PGR004G0129 Punica granatum HOM05D001054 ORTHO05D007110 7.8e-244 847.0 541 76.9
TAR628G0943 Trochodendron aralioides HOM05D001054 ORTHO05D007110 1.3e-243 846.3 531 75.9
Eucgr.C03692 Eucalyptus grandis HOM05D001054 ORTHO05D007110 1.7e-243 845.9 530 77.0
Cc07_g06840 Coffea canephora HOM05D001054 ORTHO05D007110 2.3e-243 845.5 530 76.6
Ciclev10025341m.g Citrus clementina HOM05D001054 ORTHO05D007110 3.0e-243 845.1 525 77.0
Eucgr.C03920 Eucalyptus grandis HOM05D001054 ORTHO05D007110 3.9e-243 844.7 515 78.1
Lj7C88G8 Lonicera japonica HOM05D001054 ORTHO05D007110 3.9e-243 844.7 548 75.2
Hma1.2p1_0017F.1_g012090 Hydrangea macrophylla HOM05D001054 ORTHO05D007110 8.6e-243 843.6 547 75.0
PSO541G5579 Papaver somniferum HOM05D001054 ORTHO05D007110 1.9e-242 842.4 536 75.7
COL.COLO4_11542 Corchorus olitorius HOM05D001054 ORTHO05D007110 5.6e-242 840.9 535 76.1
PSO675G2247 Papaver somniferum HOM05D001054 ORTHO05D007110 7.3e-242 840.5 536 75.6
Atru.chr3.165 Acer truncatum HOM05D001054 ORTHO05D007110 9.6e-242 840.1 545 75.4
FAN19G1445 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.2e-241 839.7 544 75.2
Cfa004102 Carpinus fangiana HOM05D001054 ORTHO05D007110 2.1e-241 839.0 539 75.3
Migut.H00367 Erythranthe guttata HOM05D001054 ORTHO05D007110 1.4e-240 836.3 529 75.2
DCAR_010834 Daucus carota HOM05D001054 ORTHO05D007110 1.8e-240 835.9 563 73.9
HanXRQChr14g0441861 Helianthus annuus HOM05D001054 ORTHO05D007110 2.4e-240 835.5 547 74.4
Peaxi162Scf00365g00936 Petunia axillaris HOM05D001054 ORTHO05D007110 2.4e-240 835.5 541 75.0
AUR62003982 Chenopodium quinoa HOM05D001054 ORTHO05D007110 6.9e-240 833.9 526 76.4
Aqoxy2G00045 Aquilegia oxysepala HOM05D001054 ORTHO05D007110 2.0e-239 832.4 541 75.0
FAN26G1436 Fragaria x ananassa HOM05D001054 ORTHO05D007110 4.4e-239 831.2 570 71.9
FAN23G1327 Fragaria x ananassa HOM05D001054 ORTHO05D007110 5.8e-239 830.9 557 72.9
Sc16g0004970 Simmondsia chinensis HOM05D001054 ORTHO05D007110 5.8e-239 830.9 530 76.2
CiPaw.01G007000 Carya illinoinensis HOM05D001054 ORTHO05D007110 7.6e-239 830.5 521 75.8
AUR62040267 Chenopodium quinoa HOM05D001054 ORTHO05D007110 7.6e-239 830.5 526 76.0
EL10Ac6g15648 Beta vulgaris HOM05D001054 ORTHO05D007110 9.9e-239 830.1 537 74.7
Nitab4.5_0006689g0010 Nicotiana tabacum HOM05D001054 ORTHO05D007110 1.3e-238 829.7 546 75.5
Nitab4.5_0002331g0050 Nicotiana tabacum HOM05D001054 ORTHO05D007110 2.2e-238 828.9 546 75.1
RcHm_v2.0_Chr2g0107461 Rosa chinensis HOM05D001054 ORTHO05D007110 2.2e-238 828.9 597 69.3
Rhsim10G0102900 Rhododendron simsii HOM05D001054 ORTHO05D007110 9.3e-237 823.5 599 68.6
CDE04G1953 Ceratophyllum demersum HOM05D001054 ORTHO05D007110 1.6e-236 822.8 537 74.5
Potri.007G053000 Populus trichocarpa HOM05D001054 ORTHO05D007110 2.7e-236 822.0 533 73.5
ATR1096G061 Amborella trichopoda HOM05D001054 ORTHO05D007110 7.8e-236 820.5 538 73.4
Lj2g0007837 Lotus japonicus HOM05D001054 ORTHO05D007110 1.7e-235 819.3 529 76.4
SGA_v2.0_scaffold72G24093 Striga asiatica HOM05D001054 ORTHO05D007110 2.3e-235 818.9 528 75.2
Sabra07G0046600 Salix brachista HOM05D001054 ORTHO05D007110 5.1e-235 817.8 533 73.4
Haze_15309 Corylus avellana HOM05D001054 ORTHO05D007110 2.5e-234 815.5 559 72.1
Lsat_1_v5_gn_2_83701 Lactuca sativa HOM05D001054 ORTHO05D007110 4.3e-234 814.7 545 73.4
Glyma.01G192200 Glycine max HOM05D001054 ORTHO05D007110 1.8e-232 809.3 509 76.0
Hund13932 Selenicereus undatus HOM05D001054 ORTHO05D007110 5.3e-232 807.7 549 71.9
Glyma.11G049900 Glycine max HOM05D001054 ORTHO05D007110 1.2e-231 806.6 535 74.4
TPR.G20955 Trifolium pratense HOM05D001054 ORTHO05D007110 2.6e-231 805.4 546 72.3
Ca_24720_v3 Cicer arietinum L. HOM05D001054 ORTHO05D007110 1.3e-230 803.1 480 79.0
Psat2g170280 Pisum sativum HOM05D001054 ORTHO05D007110 1.7e-230 802.7 546 72.5
Os01g0810100 Oryza sativa ssp. japonica HOM05D001054 ORTHO05D007110 2.9e-230 802.0 485 77.3
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 8.4e-230 800.4 472 79.7
HPP92_018502 Vanilla planifolia HOM05D001054 ORTHO05D007110 8.4e-230 800.4 548 71.5
Medtr5g016070 Medicago truncatula HOM05D001054 ORTHO05D007110 3.2e-229 798.5 544 72.6
DCAR_021470 Daucus carota HOM05D001054 ORTHO05D007110 1.2e-228 796.6 543 72.9
VMungo1215G2035 Vigna mungo HOM05D001054 ORTHO05D007110 1.6e-228 796.2 537 73.0
Lalb_Chr05g0213551 Lupinus albus HOM05D001054 ORTHO05D007110 2.1e-228 795.8 536 72.9
SGA_v2.0_scaffold15G07420 Striga asiatica HOM05D001054 ORTHO05D007110 2.1e-228 795.8 524 74.0
Phvul.002G012600 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 2.7e-228 795.4 537 73.0
Lalb_Chr09g0323511 Lupinus albus HOM05D001054 ORTHO05D007110 1.5e-226 789.6 547 71.7
arahy.Tifrunner.gnm1.ann1.AR4BCX Arachis hypogaea HOM05D001054 ORTHO05D007110 2.4e-224 782.3 530 72.6
arahy.Tifrunner.gnm1.ann1.S94KHE Arachis hypogaea HOM05D001054 ORTHO05D007110 3.1e-224 781.9 545 71.2
arahy.Tifrunner.gnm1.ann1.5YK3TE Arachis hypogaea HOM05D001054 ORTHO05D007110 5.3e-224 781.2 544 70.2
arahy.Tifrunner.gnm1.ann1.UKA06W Arachis hypogaea HOM05D001054 ORTHO05D007110 1.5e-223 779.6 530 72.6
arahy.Tifrunner.gnm1.ann1.V4EKGG Arachis hypogaea HOM05D001054 ORTHO05D007110 1.5e-223 779.6 545 71.2
CSS0030463 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 5.1e-219 764.6 538 70.8
arahy.Tifrunner.gnm1.ann1.SB8Z2H Arachis hypogaea HOM05D001054 ORTHO05D007110 5.6e-218 761.1 567 67.2
VMungo0251G1033 Vigna mungo HOM05D001054 ORTHO05D007110 1.5e-215 753.1 519 69.7
Phvul.003G236900 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 5.5e-213 744.6 521 68.3
Lj4g0019986 Lotus japonicus HOM05D001054 ORTHO05D007110 1.6e-212 743.0 543 66.3
HPP92_017544 Vanilla planifolia HOM05D001054 ORTHO05D007110 3.3e-210 735.3 475 73.3
Ah.02g125600 Amaranthus hybridus HOM05D001054 ORTHO05D007110 2.0e-207 726.1 426 78.9
ECA238G1085 Erigeron canadensis HOM05D001054 ORTHO05D007110 5.5e-205 718.0 398 81.4
TPR.G23864 Trifolium pratense HOM05D001054 ORTHO05D007110 1.3e-201 706.8 535 65.0
Medtr4g095410 Medicago truncatula HOM05D001054 ORTHO05D007110 9.1e-200 700.7 530 65.5
Zm00001eb150280 Zea mays HOM05D001054 ORTHO05D007110 1.2e-199 700.3 439 74.9
Gohir.A12G075200 Gossypium hirsutum HOM05D001054 ORTHO05D007110 1.9e-189 666.4 449 74.4
Psat4g083600 Pisum sativum HOM05D001054 ORTHO05D007110 3.6e-180 635.6 398 72.9
CSS0024742 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 1.3e-177 627.1 331 85.2
Actinidia36442 Actinidia chinensis HOM05D001054 ORTHO05D007110 4.8e-177 625.2 510 62.7
AL5G41245 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 4.7e-172 608.6 413 76.5
Dinv26904 Davidia involucrata HOM05D001054 ORTHO05D007110 6.8e-171 604.7 416 71.9
Mapoly0005s0153 Marchantia polymorpha HOM05D001054 ORTHO05D007110 1.0e-155 554.3 446 59.9
Pp3c5_10700 Physcomitrium patens HOM05D001054 ORTHO05D007110 9.8e-154 547.7 444 59.2
GSVIVG01000148001 Vitis vinifera HOM05D001054 ORTHO05D007110 1.6e-151 540.4 284 86.6
HPP92_017568 Vanilla planifolia HOM05D001054 ORTHO05D007110 6.6e-142 508.4 413 64.2
vmacro05387 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 1.2e-135 487.6 347 68.0
SMO119G0428 Selaginella moellendorffii HOM05D001054 ORTHO05D007110 5.1e-134 482.3 451 53.9
SEGI_29234 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 2.4e-131 473.4 409 58.9
AagrBONN_evm.TU.Sc2ySwM_368.879 Anthoceros agrestis HOM05D001054 ORTHO05D007110 4.9e-129 465.7 441 54.6
Glyma.05G104100 Glycine max HOM05D001054 ORTHO05D007110 1.4e-112 411.0 322 64.6
vmacro05388 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 1.4e-91 341.3 280 64.3
MD15G1293700 Malus domestica HOM05D001054 ORTHO05D007110 3.4e-90 336.7 181 86.2
Duzib147G0207 Durio zibethinus HOM05D001054 ORTHO05D007110 6.3e-84 315.8 181 81.8
AL7G13080 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 1.2e-82 311.6 172 84.3
FAN28G0670 Fragaria x ananassa HOM05D001054 ORTHO05D007110 3.2e-72 276.9 230 63.5
SEGI_10508 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 2.0e-58 231.1 135 78.5
Actinidia11996 Actinidia chinensis HOM05D001054 ORTHO05D007110 2.8e-44 184.1 117 75.2
Eucgr.C03694 Eucalyptus grandis HOM05D001054 ORTHO05D026867 9.2e-43 179.1 104 79.8
Actinidia11995 Actinidia chinensis HOM05D001054 ORTHO05D038022 1.6e-34 151.8 81 82.7
Oeu038701.1 Olea europaea HOM05D001054 ORTHO05D038022 9.2e-27 125.9 67 80.6
AT2G48121 Arabidopsis thaliana HOM05D001054 ORTHO05D026867 7.3e-24 116.3 57 96.5
A03p65210 Brassica napus HOM05D001054 ORTHO05D026867 2.1e-23 114.8 59 91.5
BraA03t15579Z Brassica rapa HOM05D001054 ORTHO05D026867 2.1e-23 114.8 59 91.5
C07p62420 Brassica napus HOM05D001054 ORTHO05D007110 2.8e-23 114.4 55 94.5
BcaNung02059 Brassica carinata HOM05D001054 ORTHO05D007110 4.0e-22 110.5 50 98.0
Sed0007349 Sechium edule HOM05D001054 ORTHO05D007110 1.8e-06 58.5 66 50.0


User provided reference genes

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