Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 0.0e+00 1098.2 553 100.0
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 6.4e-294 1013.4 632 84.5
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 1.0e-283 979.5 603 85.7
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 1.4e-195 686.8 720 56.1
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 6.6e-182 641.3 723 54.1
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 7.3e-173 611.3 741 52.0
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 2.0e-170 603.2 839 47.4
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 2.2e-169 599.7 724 51.2
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 4.9e-169 598.6 725 51.2
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 5.7e-149 531.9 511 60.9
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 1.3e-148 530.8 511 60.9
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 1.4e-147 527.3 711 47.3
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 1.3e-145 520.8 481 64.0
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 2.2e-145 520.0 481 63.8
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 2.1e-143 513.5 823 43.7
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 6.1e-127 458.8 730 42.3
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 2.2e-105 387.1 665 38.6
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.6e-103 380.9 691 37.2
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 2.7e-103 380.2 674 38.6
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 7.5e-101 372.1 704 36.6
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 9.8e-101 371.7 581 40.1
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 3.1e-99 366.7 696 36.2
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 5.4e-99 365.9 675 37.3
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 9.2e-99 365.2 674 37.4
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 8.6e-97 358.6 573 40.0
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 2.5e-96 357.1 668 36.2
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 3.3e-96 356.7 599 39.6
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 4.3e-96 356.3 659 36.0
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 7.3e-96 355.5 675 36.6
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 7.3e-96 355.5 674 37.5
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 7.3e-96 355.5 670 36.6
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 1.6e-95 354.4 723 35.1
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 3.0e-94 350.1 713 35.5
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 3.0e-94 350.1 649 37.4
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 8.9e-94 348.6 704 35.1
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 1.2e-93 348.2 719 33.7
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.2e-93 348.2 670 36.1
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 3.4e-93 346.7 713 35.3
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 3.4e-93 346.7 644 36.8
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 5.7e-93 345.9 606 38.6
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 7.5e-93 345.5 719 33.5
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 9.8e-93 345.1 650 36.2
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 2.9e-92 343.6 681 35.5
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 3.7e-92 343.2 620 36.8
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 1.1e-91 341.7 719 34.9
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 1.1e-91 341.7 624 37.5
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 2.4e-91 340.5 698 35.5
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 3.2e-91 340.1 738 33.6
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 7.0e-91 339.0 681 34.1
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 1.3e-89 334.7 725 34.3
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 1.7e-89 334.3 670 35.2
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 3.0e-89 333.6 724 34.3
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 3.9e-89 333.2 701 34.4
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 5.0e-89 332.8 715 33.4
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 5.0e-89 332.8 712 34.3
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 8.6e-89 332.0 714 32.9
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 3.3e-88 330.1 657 35.2
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 1.2e-87 328.2 662 35.8
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 2.8e-87 327.0 672 33.2
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 8.0e-87 325.5 707 34.1
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 1.0e-86 325.1 729 33.7
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 1.4e-86 324.7 715 35.2
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 2.3e-86 323.9 656 35.4
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 3.1e-86 323.6 662 34.3
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 5.2e-86 322.8 711 34.5
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 3.4e-85 320.1 713 33.4
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 7.5e-85 318.9 768 31.2
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.3e-84 318.2 695 34.1
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 2.9e-84 317.0 695 34.0
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 2.9e-84 317.0 661 34.0
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 8.3e-84 315.5 678 34.1
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 1.1e-83 315.1 742 33.2
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 2.4e-83 313.9 756 33.7
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 3.2e-83 313.5 666 34.5
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 5.4e-83 312.8 626 35.0
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 9.2e-83 312.0 692 33.8
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 6.0e-82 309.3 667 33.9
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 1.3e-81 308.1 760 32.9
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 1.3e-81 308.1 714 33.1
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 1.7e-81 307.8 725 32.7
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 1.6e-79 301.2 684 33.2
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 4.7e-79 299.7 712 33.0
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 1.1e-78 298.5 796 32.4
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 4.0e-78 296.6 710 32.3
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 5.2e-78 296.2 644 33.5
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 8.9e-78 295.4 730 33.0
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 8.9e-78 295.4 564 37.2
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 1.2e-77 295.0 696 32.9
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 1.7e-76 291.2 671 32.8
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.2e-76 290.8 669 32.9
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 2.2e-76 290.8 644 34.3
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 8.3e-76 288.9 713 32.3
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 2.1e-74 284.3 606 34.7
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 7.8e-74 282.3 672 32.9
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 5.6e-72 276.2 675 33.0
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 9.5e-72 275.4 456 39.3
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 4.4e-69 266.5 504 36.7
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.3e-68 265.0 668 32.8
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 2.3e-65 254.2 649 31.4
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 5.6e-64 249.6 172 76.2
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 5.6e-64 249.6 172 76.2
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 5.8e-61 239.6 645 29.0
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 2.2e-60 237.7 592 32.9
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 2.3e-57 227.6 751 29.0
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 6.6e-57 226.1 576 30.6
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.3e-55 221.9 644 28.4
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 2.4e-54 217.6 715 28.0
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.6e-50 204.9 555 31.4
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 2.1e-47 194.5 342 36.3
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 2.7e-42 177.6 493 30.6
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 1.0e-41 175.6 574 29.6
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.0e-36 159.1 267 34.8
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 4.9e-36 156.8 558 27.1
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 1.1e-35 155.6 311 34.7
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 6.0e-34 149.8 353 33.7
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 3.9e-33 147.1 187 40.1
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 1.7e-28 131.7 229 34.5
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 1.7e-28 131.7 306 29.4
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 6.1e-26 123.2 542 26.9
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 1.1e-22 112.5 86 59.3
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 2.4e-22 111.3 442 24.0
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 5.7e-16 90.1 80 50.0
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 7.4e-16 89.7 82 50.0
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 1.2e-13 82.4 66 54.5
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 7.2e-11 73.2 227 30.4
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 1.5e-08 65.5 89 41.6
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 2.6e-08 64.7 83 37.3
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 3.7e-07 60.8 79 43.0
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 6.3e-07 60.1 50 58.0


User provided reference genes

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