Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03665 Brassica carinata HOM05D001054 ORTHO05D007110 0.0e+00 1100.1 538 100.0
C01p01620 Brassica napus HOM05D001054 ORTHO05D007110 0.0e+00 1100.1 538 100.0
BolC1t00157H Brassica oleracea HOM05D001054 ORTHO05D007110 0.0e+00 1077.0 538 98.7
A01p01450 Brassica napus HOM05D001054 ORTHO05D007110 1.8e-309 1065.1 538 97.6
BraA01t00139Z Brassica rapa HOM05D001054 ORTHO05D007110 5.2e-309 1063.5 538 97.4
Sp7g35190 Schrenkiella parvula HOM05D001054 ORTHO05D007110 3.4e-292 1007.7 547 90.7
Thhalv10024858m.g Eutrema salsugineum HOM05D001054 ORTHO05D007110 9.3e-290 999.6 544 89.9
BcaNung05084 Brassica carinata HOM05D001054 ORTHO05D007110 1.3e-288 995.7 545 91.9
Carub.0007s0278 Capsella rubella HOM05D001054 ORTHO05D007110 3.7e-286 987.6 543 89.3
AL7G13250 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 4.8e-286 987.3 540 89.6
CARHR245910 Cardamine hirsuta HOM05D001054 ORTHO05D007110 1.8e-285 985.3 545 89.2
AT4G37510 Arabidopsis thaliana HOM05D001054 ORTHO05D007110 3.1e-285 984.6 540 89.3
Aa31LG6G14390 Aethionema arabicum HOM05D001054 ORTHO05D007110 3.2e-282 974.5 546 87.5
THA.LOC104807624 Tarenaya hassleriana HOM05D001054 ORTHO05D007110 1.7e-275 952.2 541 86.1
Cpa.g.sc6.46 Carica papaya HOM05D001054 ORTHO05D007110 1.7e-259 899.0 541 81.1
Thecc.01G069100 Theobroma cacao HOM05D001054 ORTHO05D007110 3.3e-255 884.8 537 80.3
Gorai.008G080600 Gossypium raimondii HOM05D001054 ORTHO05D007110 2.2e-254 882.1 536 80.6
Gohir.D12G073300 Gossypium hirsutum HOM05D001054 ORTHO05D007110 1.4e-253 879.4 536 80.2
CANSAT01G2549 Cannabis sativa HOM05D001054 ORTHO05D007110 6.5e-251 870.5 544 78.1
PSO541G5579 Papaver somniferum HOM05D001054 ORTHO05D007110 8.5e-251 870.2 531 78.2
Duzib264G0621 Durio zibethinus HOM05D001054 ORTHO05D007110 1.5e-250 869.4 537 79.1
CsaV3_6G043910 Cucumis sativus L. HOM05D001054 ORTHO05D007110 3.2e-250 868.2 531 77.6
Manes.13G113500 Manihot esculenta HOM05D001054 ORTHO05D007110 3.2e-250 868.2 487 83.2
PSO675G2247 Papaver somniferum HOM05D001054 ORTHO05D007110 4.2e-250 867.8 531 78.0
TWI09G0178 Tripterygium wilfordii HOM05D001054 ORTHO05D007110 7.2e-250 867.1 540 77.4
PGR004G0129 Punica granatum HOM05D001054 ORTHO05D007110 1.6e-249 865.9 527 79.3
Prupe.6G223800 Prunus persica HOM05D001054 ORTHO05D007110 2.1e-249 865.5 519 79.2
Cfa004102 Carpinus fangiana HOM05D001054 ORTHO05D007110 3.6e-249 864.8 532 77.4
Solyc10g080040.3 Solanum lycopersicum HOM05D001054 ORTHO05D007110 6.1e-249 864.0 539 77.0
FvH4_1g17270 Fragaria vesca HOM05D001054 ORTHO05D007110 1.0e-248 863.2 545 77.2
Sopen10g030650 Solanum pennellii HOM05D001054 ORTHO05D007110 1.4e-248 862.8 539 76.8
Atru.chr3.194 Acer truncatum HOM05D001054 ORTHO05D007110 1.8e-248 862.4 542 78.0
Ciclev10025341m.g Citrus clementina HOM05D001054 ORTHO05D007110 2.3e-248 862.1 531 77.8
Nn7g37208 Nelumbo nucifera HOM05D001054 ORTHO05D007110 3.0e-248 861.7 537 78.2
Oeu013280.1 Olea europaea HOM05D001054 ORTHO05D007110 3.0e-248 861.7 536 77.4
Sed0014779 Sechium edule HOM05D001054 ORTHO05D007110 3.0e-248 861.7 540 77.2
PGSC0003DMG400023692 Solanum tuberosum HOM05D001054 ORTHO05D007110 3.0e-248 861.7 539 76.8
Cc07_g06840 Coffea canephora HOM05D001054 ORTHO05D007110 6.7e-248 860.5 547 76.6
TAR625G0225 Trochodendron aralioides HOM05D001054 ORTHO05D007110 6.7e-248 860.5 543 76.2
Sed0024674 Sechium edule HOM05D001054 ORTHO05D007110 8.8e-248 860.1 536 77.1
MSTRG.23690 Avicennia marina HOM05D001054 ORTHO05D007110 1.5e-247 859.4 519 79.2
Lj7C88G8 Lonicera japonica HOM05D001054 ORTHO05D007110 2.6e-247 858.6 539 77.6
MBI19_g10811_MAGBIO Magnolia biondii HOM05D001054 ORTHO05D007110 3.3e-247 858.2 532 78.2
ClCG01G017380 Citrullus lanatus HOM05D001054 ORTHO05D007110 5.7e-247 857.4 544 77.4
SalBow6G1211 Salvia bowleyana HOM05D001054 ORTHO05D007110 9.7e-247 856.7 536 76.9
Eucgr.C03920 Eucalyptus grandis HOM05D001054 ORTHO05D007110 1.3e-246 856.3 513 79.7
Atru.chr3.165 Acer truncatum HOM05D001054 ORTHO05D007110 2.2e-246 855.5 545 77.2
COL.COLO4_11542 Corchorus olitorius HOM05D001054 ORTHO05D007110 3.7e-246 854.7 540 77.6
FAN19G1445 Fragaria x ananassa HOM05D001054 ORTHO05D007110 6.3e-246 854.0 554 75.8
HanXRQChr14g0441861 Helianthus annuus HOM05D001054 ORTHO05D007110 1.1e-245 853.2 543 75.9
CiPaw.01G007000 Carya illinoinensis HOM05D001054 ORTHO05D007110 4.1e-245 851.3 529 77.1
Eucgr.C03692 Eucalyptus grandis HOM05D001054 ORTHO05D007110 5.3e-245 850.9 547 76.1
Hma1.2p1_0017F.1_g012090 Hydrangea macrophylla HOM05D001054 ORTHO05D007110 5.3e-245 850.9 540 76.1
TAR628G0943 Trochodendron aralioides HOM05D001054 ORTHO05D007110 7.0e-245 850.5 540 75.4
MELO3C007616.2 Cucumis melo HOM05D001054 ORTHO05D007110 1.2e-244 849.7 570 73.9
DCAR_010834 Daucus carota HOM05D001054 ORTHO05D007110 1.6e-244 849.4 555 75.3
Sc16g0004970 Simmondsia chinensis HOM05D001054 ORTHO05D007110 7.7e-244 847.0 535 77.6
FAN26G1436 Fragaria x ananassa HOM05D001054 ORTHO05D007110 2.2e-243 845.5 580 72.6
AUR62003982 Chenopodium quinoa HOM05D001054 ORTHO05D007110 5.0e-243 844.3 520 77.3
FAN23G1327 Fragaria x ananassa HOM05D001054 ORTHO05D007110 5.0e-243 844.3 564 73.9
Rhsim10G0102900 Rhododendron simsii HOM05D001054 ORTHO05D007110 6.5e-243 844.0 595 70.8
RcHm_v2.0_Chr2g0107461 Rosa chinensis HOM05D001054 ORTHO05D007110 2.5e-242 842.0 598 70.7
AUR62040267 Chenopodium quinoa HOM05D001054 ORTHO05D007110 5.5e-242 840.9 520 77.3
Haze_15309 Corylus avellana HOM05D001054 ORTHO05D007110 5.5e-242 840.9 552 74.1
Aqoxy2G00045 Aquilegia oxysepala HOM05D001054 ORTHO05D007110 1.2e-241 839.7 542 75.8
Migut.H00367 Erythranthe guttata HOM05D001054 ORTHO05D007110 6.1e-241 837.4 521 76.0
Nitab4.5_0002331g0050 Nicotiana tabacum HOM05D001054 ORTHO05D007110 6.1e-241 837.4 537 75.8
Peaxi162Scf00365g00936 Petunia axillaris HOM05D001054 ORTHO05D007110 8.0e-241 837.0 537 75.4
Nitab4.5_0006689g0010 Nicotiana tabacum HOM05D001054 ORTHO05D007110 4.0e-240 834.7 539 75.5
ATR1096G061 Amborella trichopoda HOM05D001054 ORTHO05D007110 6.8e-240 833.9 533 75.2
Potri.007G053000 Populus trichocarpa HOM05D001054 ORTHO05D007110 6.8e-240 833.9 533 74.9
EL10Ac6g15648 Beta vulgaris HOM05D001054 ORTHO05D007110 1.5e-239 832.8 541 74.9
CDE04G1953 Ceratophyllum demersum HOM05D001054 ORTHO05D007110 2.0e-239 832.4 537 75.8
Lj2g0007837 Lotus japonicus HOM05D001054 ORTHO05D007110 9.8e-239 830.1 545 76.1
Sabra07G0046600 Salix brachista HOM05D001054 ORTHO05D007110 9.8e-239 830.1 533 74.9
SGA_v2.0_scaffold72G24093 Striga asiatica HOM05D001054 ORTHO05D007110 1.1e-237 826.6 519 76.3
Lsat_1_v5_gn_2_83701 Lactuca sativa HOM05D001054 ORTHO05D007110 3.1e-237 825.1 546 74.4
Hund13932 Selenicereus undatus HOM05D001054 ORTHO05D007110 5.4e-237 824.3 540 73.9
Ca_24720_v3 Cicer arietinum L. HOM05D001054 ORTHO05D007110 1.7e-235 819.3 491 78.6
Glyma.01G192200 Glycine max HOM05D001054 ORTHO05D007110 8.6e-235 817.0 478 80.3
Psat2g170280 Pisum sativum HOM05D001054 ORTHO05D007110 1.1e-234 816.6 544 73.9
TPR.G20955 Trifolium pratense HOM05D001054 ORTHO05D007110 1.1e-234 816.6 543 73.7
Glyma.11G049900 Glycine max HOM05D001054 ORTHO05D007110 3.3e-234 815.1 545 74.3
Os01g0810100 Oryza sativa ssp. japonica HOM05D001054 ORTHO05D007110 4.2e-234 814.7 484 78.7
Medtr5g016070 Medicago truncatula HOM05D001054 ORTHO05D007110 5.5e-234 814.3 538 74.5
Phvul.002G012600 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 1.2e-233 813.1 530 74.7
VMungo1215G2035 Vigna mungo HOM05D001054 ORTHO05D007110 4.7e-233 811.2 539 74.0
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 1.8e-232 809.3 471 80.7
HPP92_018502 Vanilla planifolia HOM05D001054 ORTHO05D007110 2.3e-232 808.9 487 78.2
SGA_v2.0_scaffold15G07420 Striga asiatica HOM05D001054 ORTHO05D007110 3.4e-231 805.1 536 73.3
DCAR_021470 Daucus carota HOM05D001054 ORTHO05D007110 1.3e-230 803.1 528 74.2
arahy.Tifrunner.gnm1.ann1.AR4BCX Arachis hypogaea HOM05D001054 ORTHO05D007110 2.7e-228 795.4 529 73.3
Lalb_Chr05g0213551 Lupinus albus HOM05D001054 ORTHO05D007110 2.7e-228 795.4 537 72.6
Lalb_Chr09g0323511 Lupinus albus HOM05D001054 ORTHO05D007110 2.7e-228 795.4 548 72.1
arahy.Tifrunner.gnm1.ann1.5YK3TE Arachis hypogaea HOM05D001054 ORTHO05D007110 7.8e-228 793.9 539 72.4
arahy.Tifrunner.gnm1.ann1.S94KHE Arachis hypogaea HOM05D001054 ORTHO05D007110 1.0e-227 793.5 544 71.5
arahy.Tifrunner.gnm1.ann1.V4EKGG Arachis hypogaea HOM05D001054 ORTHO05D007110 2.9e-227 792.0 544 71.5
arahy.Tifrunner.gnm1.ann1.UKA06W Arachis hypogaea HOM05D001054 ORTHO05D007110 6.6e-227 790.8 529 73.0
arahy.Tifrunner.gnm1.ann1.SB8Z2H Arachis hypogaea HOM05D001054 ORTHO05D007110 1.6e-220 769.6 562 68.9
CSS0030463 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 1.7e-219 766.1 534 71.2
VMungo0251G1033 Vigna mungo HOM05D001054 ORTHO05D007110 3.3e-218 761.9 540 69.8
Lj4g0019986 Lotus japonicus HOM05D001054 ORTHO05D007110 4.3e-218 761.5 538 68.8
Phvul.003G236900 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 2.6e-215 752.3 542 68.5
HPP92_017544 Vanilla planifolia HOM05D001054 ORTHO05D007110 2.7e-212 742.3 474 74.3
TPR.G23864 Trifolium pratense HOM05D001054 ORTHO05D007110 2.8e-209 732.3 531 66.7
Medtr4g095410 Medicago truncatula HOM05D001054 ORTHO05D007110 1.5e-207 726.5 525 67.8
Ah.02g125600 Amaranthus hybridus HOM05D001054 ORTHO05D007110 4.4e-207 724.9 426 78.6
ECA238G1085 Erigeron canadensis HOM05D001054 ORTHO05D007110 1.3e-203 713.4 397 81.4
Zm00001eb150280 Zea mays HOM05D001054 ORTHO05D007110 3.3e-202 708.8 425 78.1
Gohir.A12G075200 Gossypium hirsutum HOM05D001054 ORTHO05D007110 5.1e-195 684.9 433 77.1
Psat4g083600 Pisum sativum HOM05D001054 ORTHO05D007110 4.2e-181 638.6 398 72.9
CSS0024742 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 8.1e-177 624.4 331 85.2
Actinidia36442 Actinidia chinensis HOM05D001054 ORTHO05D007110 3.1e-176 622.5 486 64.2
AL5G41245 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 9.0e-176 620.9 409 78.2
Dinv26904 Davidia involucrata HOM05D001054 ORTHO05D007110 6.5e-174 614.8 410 73.2
Mapoly0005s0153 Marchantia polymorpha HOM05D001054 ORTHO05D007110 9.4e-157 557.8 492 57.1
Pp3c5_10700 Physcomitrium patens HOM05D001054 ORTHO05D007110 1.5e-154 550.4 472 57.0
GSVIVG01000148001 Vitis vinifera HOM05D001054 ORTHO05D007110 3.8e-150 535.8 284 86.3
HPP92_017568 Vanilla planifolia HOM05D001054 ORTHO05D007110 1.4e-144 517.3 417 65.2
vmacro05387 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 1.4e-136 490.7 347 68.9
SEGI_29234 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 3.1e-136 489.6 394 61.7
SMO119G0428 Selaginella moellendorffii HOM05D001054 ORTHO05D007110 9.4e-133 478.0 451 53.4
AagrBONN_evm.TU.Sc2ySwM_368.879 Anthoceros agrestis HOM05D001054 ORTHO05D007110 2.2e-129 466.8 460 53.9
Glyma.05G104100 Glycine max HOM05D001054 ORTHO05D007110 5.9e-119 432.2 337 65.3
vmacro05388 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 2.1e-95 354.0 274 67.2
MD15G1293700 Malus domestica HOM05D001054 ORTHO05D007110 1.2e-90 338.2 181 85.6
Duzib147G0207 Durio zibethinus HOM05D001054 ORTHO05D007110 1.2e-84 318.2 181 82.3
AL7G13080 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 1.9e-80 304.3 172 83.1
FAN28G0670 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.4e-75 288.1 241 66.0
SEGI_10508 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 2.6e-58 230.7 135 79.3
Actinidia11996 Actinidia chinensis HOM05D001054 ORTHO05D007110 2.2e-44 184.5 117 75.2
Eucgr.C03694 Eucalyptus grandis HOM05D001054 ORTHO05D026867 8.2e-44 182.6 104 82.7
Actinidia11995 Actinidia chinensis HOM05D001054 ORTHO05D038022 6.5e-33 146.4 81 80.2
Oeu038701.1 Olea europaea HOM05D001054 ORTHO05D038022 1.2e-26 125.6 67 80.6
AT2G48121 Arabidopsis thaliana HOM05D001054 ORTHO05D026867 1.9e-24 118.2 57 94.7
A03p65210 Brassica napus HOM05D001054 ORTHO05D026867 5.5e-24 116.7 59 89.8
BraA03t15579Z Brassica rapa HOM05D001054 ORTHO05D026867 5.5e-24 116.7 59 89.8
C07p62420 Brassica napus HOM05D001054 ORTHO05D007110 3.0e-22 110.9 55 92.7
BcaNung02059 Brassica carinata HOM05D001054 ORTHO05D007110 5.7e-21 106.7 50 96.0
Sed0007349 Sechium edule HOM05D001054 ORTHO05D007110 3.5e-10 70.9 73 54.8


User provided reference genes

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