Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 1.9e-139 499.2 256 100.0
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 2.8e-119 432.2 258 89.1
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 1.4e-118 429.9 258 88.8
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 1.4e-118 429.9 256 87.9
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 2.8e-111 405.6 255 83.9
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 4.8e-111 404.8 256 82.4
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.2e-109 400.2 257 82.5
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.6e-109 399.8 256 81.2
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 2.0e-109 399.4 256 82.8
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 2.0e-109 399.4 255 82.4
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 3.5e-109 398.7 255 82.7
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 2.9e-108 395.6 223 92.8
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 8.5e-108 394.0 256 80.9
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 1.9e-107 392.9 257 81.3
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.7e-106 388.3 257 80.5
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.1e-94 348.6 256 72.3
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 2.0e-93 346.3 240 74.2
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 8.6e-92 340.9 255 71.0
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 3.3e-91 339.0 254 68.9
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 4.7e-90 335.1 255 73.7
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.1e-86 323.9 258 67.1
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 3.1e-86 322.4 261 65.5
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 7.0e-86 321.2 252 67.5
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.2e-85 320.5 256 64.5
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.2e-85 320.5 252 67.5
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.2e-85 320.5 252 67.5
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 2.0e-85 319.7 262 66.0
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 2.7e-85 319.3 252 67.1
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 3.5e-85 318.9 231 72.3
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 5.9e-85 318.2 241 67.6
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 7.8e-85 317.8 254 64.2
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.3e-84 317.0 255 64.7
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 2.3e-84 316.2 259 66.0
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.9e-84 315.8 258 64.0
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 2.9e-84 315.8 264 65.9
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 5.0e-84 315.1 256 65.6
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 8.6e-84 314.3 253 65.6
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 8.6e-84 314.3 222 71.6
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.1e-83 313.9 261 65.5
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 1.1e-83 313.9 274 63.5
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 1.1e-83 313.9 259 67.6
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 1.1e-83 313.9 263 65.0
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.5e-83 313.5 259 67.6
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.9e-83 313.2 257 66.5
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 1.9e-83 313.2 264 65.2
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 1.9e-83 313.2 263 65.0
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 2.5e-83 312.8 257 66.1
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 3.3e-83 312.4 252 65.9
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.3e-83 312.4 259 66.4
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 4.3e-83 312.0 256 63.7
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 4.3e-83 312.0 239 66.5
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 5.6e-83 311.6 262 65.6
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 7.3e-83 311.2 265 64.5
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 9.5e-83 310.8 230 68.3
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 9.5e-83 310.8 264 65.5
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.6e-82 310.1 262 64.9
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 2.8e-82 309.3 263 64.3
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.8e-82 309.3 266 64.7
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 2.3e-81 306.2 260 63.1
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 3.0e-81 305.8 249 65.9
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 3.0e-81 305.8 258 65.1
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 5.2e-81 305.1 253 66.8
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 5.2e-81 305.1 259 65.3
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 6.8e-81 304.7 259 61.0
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 6.8e-81 304.7 254 64.2
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 6.8e-81 304.7 252 66.3
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 6.8e-81 304.7 217 69.6
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 8.9e-81 304.3 252 63.5
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 8.9e-81 304.3 261 63.2
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 1.2e-80 303.9 185 78.9
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 1.2e-80 303.9 256 65.6
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 1.2e-80 303.9 222 67.1
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 1.5e-80 303.5 185 80.5
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 2.6e-80 302.8 251 65.3
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 4.4e-80 302.0 181 79.0
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 4.4e-80 302.0 256 62.1
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 4.4e-80 302.0 255 63.9
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 7.5e-80 301.2 262 61.1
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 9.8e-80 300.8 258 62.8
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 9.8e-80 300.8 239 68.2
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 9.8e-80 300.8 225 69.3
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 1.7e-79 300.1 251 65.3
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 1.7e-79 300.1 255 65.1
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.7e-79 300.1 185 78.9
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.2e-79 299.7 253 64.0
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 2.2e-79 299.7 242 66.5
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 2.9e-79 299.3 269 62.8
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 6.4e-79 298.1 249 64.7
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.1e-78 297.4 259 61.4
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 2.4e-78 296.2 252 63.1
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 2.4e-78 296.2 258 61.6
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 2.4e-78 296.2 257 61.9
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 3.2e-78 295.8 251 64.1
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 3.2e-78 295.8 254 61.4
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 3.2e-78 295.8 257 60.3
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 3.2e-78 295.8 253 64.4
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 3.2e-78 295.8 249 64.3
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 7.0e-78 294.7 227 68.7
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.2e-77 293.9 257 60.3
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 1.2e-77 293.9 201 72.6
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 1.6e-77 293.5 255 60.0
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 2.0e-77 293.1 189 76.7
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.7e-77 292.7 233 63.9
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 7.8e-77 291.2 259 59.1
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 3.9e-76 288.9 255 60.0
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 3.9e-76 288.9 263 60.1
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 5.0e-76 288.5 266 61.3
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 5.0e-76 288.5 266 61.3
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 5.0e-76 288.5 230 65.2
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 6.6e-76 288.1 257 60.7
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 1.1e-75 287.3 263 61.2
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 5.6e-75 285.0 258 59.3
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 7.3e-75 284.6 263 58.6
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 7.3e-75 284.6 236 66.9
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 1.2e-74 283.9 259 60.2
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 1.6e-74 283.5 256 58.2
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 4.7e-74 282.0 262 58.8
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 2.3e-73 279.6 250 60.4
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 3.4e-72 275.8 259 59.5
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 2.9e-71 272.7 202 68.3
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 3.7e-71 272.3 225 64.9
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 5.4e-70 268.5 222 63.1
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 6.0e-69 265.0 258 58.1
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 7.8e-69 264.6 186 72.0
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 1.3e-68 263.8 176 74.4
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 2.3e-68 263.1 233 60.1
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 1.9e-67 260.0 247 57.9
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 5.6e-67 258.5 200 65.0
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 9.5e-67 257.7 189 66.1
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 1.2e-66 257.3 213 62.4
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 2.8e-66 256.1 180 68.3
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 2.3e-65 253.1 184 65.8
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 6.4e-63 245.0 186 64.5
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 1.1e-59 234.2 159 72.3
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.1e-58 229.9 207 58.0
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 4.7e-58 228.8 153 72.5
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 4.7e-58 228.8 252 53.2
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 4.2e-54 215.7 186 61.3
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 5.1e-52 208.8 135 74.1
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 2.5e-51 206.5 237 52.3
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 2.8e-50 203.0 209 56.5
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 8.1e-50 201.4 221 52.5
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 4.0e-49 199.1 200 58.5
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 9.9e-48 194.5 118 77.1
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.4e-46 190.7 125 76.8
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 7.1e-46 188.3 210 48.6
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 9.6e-43 177.9 170 64.7
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 1.3e-42 177.6 262 45.0
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 1.6e-42 177.2 173 56.6
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.5e-40 170.6 223 43.9
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 1.5e-40 170.6 128 68.0
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 5.8e-40 168.7 166 57.8
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 2.2e-39 166.8 262 44.3
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 1.4e-38 164.1 213 46.5
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 6.2e-34 148.7 80 91.2
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 5.3e-33 145.6 81 88.9
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 3.5e-29 132.9 103 63.1
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 3.1e-25 119.8 79 69.6
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 6.5e-23 112.1 82 64.6
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 3.2e-22 109.8 115 53.0
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 3.9e-20 102.8 123 48.0
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.1e-19 101.3 88 59.1
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 1.1e-14 84.7 207 34.3
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 3.0e-12 76.6 49 73.5
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 1.3e-10 71.2 133 38.3
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 2.2e-10 70.5 204 32.8
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 2.8e-10 70.1 123 36.6
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 1.8e-09 67.4 67 44.8
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 4.1e-09 66.2 227 30.4
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 2.0e-08 63.9 57 63.2
BcaC01g01539 Brassica carinata HOM05D004152 ORTHO05D004878 2.6e-08 63.5 63 54.0
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 1.3e-07 61.2 42 66.7
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 1.7e-07 60.8 46 54.3
BolC2t10115H Brassica oleracea HOM05D034141 ORTHO05D033148 1.4e-06 57.8 36 80.6
Cfa023744 Carpinus fangiana HOM05D003112 ORTHO05D003660 5.5e-06 55.8 166 27.1
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 7.2e-06 55.5 107 37.4


User provided reference genes

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