Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 1.6e-257 892.5 529 100.0
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 2.0e-244 849.0 426 96.5
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 2.7e-241 838.6 440 93.2
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 1.0e-240 836.6 431 94.0
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 1.8e-240 835.9 440 93.0
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 2.3e-240 835.5 430 94.9
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 2.3e-240 835.5 429 93.7
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 9.6e-239 830.1 430 94.7
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 8.1e-238 827.0 425 94.1
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 8.1e-238 827.0 430 93.5
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 1.2e-233 813.1 428 92.3
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 4.6e-233 811.2 428 90.0
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 9.0e-229 797.0 430 90.9
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 5.8e-228 794.3 426 89.9
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 4.9e-227 791.2 425 91.3
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 1.2e-225 786.6 436 89.0
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 3.8e-219 765.0 409 91.7
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 6.1e-217 757.7 437 85.8
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 2.2e-211 739.2 420 84.5
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 1.1e-189 667.2 418 76.8
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 2.0e-188 662.9 418 75.4
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 5.9e-188 661.4 419 74.7
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 2.9e-187 659.1 420 74.8
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 2.9e-187 659.1 420 74.8
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 1.1e-186 657.1 416 76.7
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 1.5e-186 656.8 417 76.5
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 3.2e-186 655.6 430 74.2
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 5.5e-186 654.8 416 76.2
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 1.6e-185 653.3 421 75.1
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 3.6e-185 652.1 416 74.5
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 4.7e-185 651.7 413 76.5
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 4.7e-185 651.7 413 76.5
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 1.0e-184 650.6 417 74.3
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 1.0e-184 650.6 417 75.3
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 1.8e-184 649.8 420 74.3
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 3.0e-184 649.0 420 75.2
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 4.0e-184 648.7 417 76.0
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 4.0e-184 648.7 420 73.8
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 6.8e-184 647.9 419 74.5
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 2.0e-183 646.4 417 75.1
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 2.6e-183 646.0 422 74.4
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 3.4e-183 645.6 426 73.7
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 5.7e-183 644.8 417 74.8
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 9.8e-183 644.0 413 75.8
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 1.3e-182 643.7 417 74.3
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 1.7e-182 643.3 420 74.0
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 2.2e-182 642.9 424 73.6
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 2.2e-182 642.9 420 74.3
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 2.2e-182 642.9 438 71.5
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 3.7e-182 642.1 417 73.9
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 4.8e-182 641.7 422 73.9
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 8.3e-182 641.0 422 74.2
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 1.1e-181 640.6 454 69.8
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 1.4e-181 640.2 417 73.1
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 1.8e-181 639.8 410 75.6
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 4.1e-181 638.6 423 73.5
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 4.1e-181 638.6 421 72.9
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 5.9e-180 634.8 420 73.8
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 5.9e-180 634.8 414 74.2
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 3.8e-179 632.1 422 73.5
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 3.8e-179 632.1 422 73.5
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 5.0e-179 631.7 429 72.5
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 5.0e-179 631.7 418 73.4
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 6.5e-179 631.3 422 72.5
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 1.1e-178 630.6 421 72.4
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 1.1e-178 630.6 416 75.0
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 2.5e-178 629.4 416 73.3
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 2.1e-177 626.3 417 72.2
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 2.8e-177 625.9 420 73.1
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 4.7e-177 625.2 413 75.1
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 1.0e-176 624.0 420 72.9
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 1.8e-176 623.2 420 71.2
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 1.5e-175 620.2 417 72.4
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 2.6e-175 619.4 424 71.7
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 4.4e-175 618.6 417 72.7
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 5.7e-175 618.2 393 76.3
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 4.9e-174 615.1 426 69.7
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 2.4e-173 612.8 455 67.7
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 5.4e-173 611.7 416 71.4
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 1.2e-172 610.5 422 71.3
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 7.8e-172 607.8 426 70.2
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 1.7e-171 606.7 419 70.9
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 2.9e-171 605.9 420 70.2
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 1.1e-170 604.0 392 74.0
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 9.5e-170 600.9 342 81.9
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 1.2e-167 594.0 416 71.9
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 1.5e-167 593.6 454 65.6
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 6.0e-164 581.6 449 66.1
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 1.0e-163 580.9 390 71.5
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 1.1e-162 577.4 417 67.9
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.5e-162 577.0 433 67.2
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 7.3e-162 574.7 417 68.1
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 2.1e-161 573.2 410 67.1
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 4.7e-161 572.0 417 66.4
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 1.1e-160 570.9 419 67.1
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 2.4e-157 559.7 422 66.6
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 7.0e-157 558.1 417 65.9
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 3.9e-155 552.4 383 70.2
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 3.6e-153 545.8 385 70.1
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 5.2e-152 542.0 415 63.4
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 1.2e-151 540.8 378 70.1
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 2.1e-148 530.0 389 66.6
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 8.6e-147 524.6 314 77.7
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 3.1e-144 516.2 393 65.6
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 6.8e-144 515.0 322 74.8
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 6.2e-137 491.9 363 67.2
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 5.8e-135 485.3 438 58.9
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 2.7e-132 476.5 227 97.4
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 4.8e-129 465.7 341 67.2
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 3.0e-123 446.4 293 71.7
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 3.7e-121 439.5 320 67.5
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 7.6e-119 431.8 429 54.1
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 1.3e-118 431.0 336 63.7
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 7.1e-117 425.2 450 51.1
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 8.2e-113 411.8 424 54.0
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 2.9e-110 403.3 354 56.2
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 6.0e-108 395.6 311 65.0
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 4.1e-104 382.9 324 54.3
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 5.9e-103 379.0 323 61.9
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 3.8e-102 376.3 299 61.5
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 5.5e-93 345.9 190 82.1
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 2.4e-88 330.5 430 44.9
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 1.6e-79 301.2 224 66.5
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 2.7e-76 290.4 259 57.9
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 5.4e-48 196.4 115 79.1
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 7.8e-47 192.6 256 48.0
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 4.3e-45 186.8 150 66.7
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 2.8e-44 184.1 135 66.7
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 1.1e-37 162.2 294 35.7
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 2.1e-31 141.4 137 59.9
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 2.8e-28 131.0 77 76.6
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 4.0e-27 127.1 255 34.9
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 2.2e-25 121.3 106 63.2
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 1.4e-24 118.6 79 69.6
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 4.8e-20 103.6 205 35.6
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 8.1e-20 102.8 80 62.5
BolC1t01095H Brassica oleracea HOM05D005140 ORTHO05D006288 1.7e-14 85.1 48 83.3
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 3.3e-13 80.9 52 63.5
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 8.4e-09 66.2 29 89.7
Psat6g107920 Pisum sativum HOM05D032184 ORTHO05D330502 3.9e-06 57.4 28 89.3


User provided reference genes

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