Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01436 Brassica carinata HOM05D001758 ORTHO05D017200 1.1e-78 296.6 147 100.0
BolC7t45772H Brassica oleracea HOM05D001758 ORTHO05D004430 1.1e-78 296.6 147 100.0
C07p52720 Brassica napus HOM05D001758 ORTHO05D004430 3.4e-77 291.6 147 98.0
A03p54320 Brassica napus HOM05D001758 ORTHO05D004430 6.4e-76 287.3 145 97.2
BraA03t14494Z Brassica rapa HOM05D001758 ORTHO05D004430 6.4e-76 287.3 145 97.2
Thhalv10024360m.g Eutrema salsugineum HOM05D001758 ORTHO05D004430 5.6e-72 274.2 147 91.2
Sp7g21360 Schrenkiella parvula HOM05D001758 ORTHO05D004430 4.8e-71 271.2 147 89.8
Carub.0007s1765 Capsella rubella HOM05D001758 ORTHO05D004430 1.3e-68 263.1 145 86.9
AL7G30000 Arabidopsis lyrata HOM05D001758 ORTHO05D004430 2.2e-68 262.3 145 87.6
AT4G23460 Arabidopsis thaliana HOM05D001758 ORTHO05D004430 7.1e-67 257.3 145 85.5
CARHR255190 Cardamine hirsuta HOM05D001758 ORTHO05D004430 1.6e-66 256.1 145 84.1
Carub.0006s3029 Capsella rubella HOM05D001758 ORTHO05D004430 2.1e-66 255.8 145 84.8
Aa31LG6G6650 Aethionema arabicum HOM05D001758 ORTHO05D004430 4.6e-66 254.6 144 86.8
Sp6g06070 Schrenkiella parvula HOM05D001758 ORTHO05D004430 1.8e-65 252.7 145 83.4
BcaB01g01638 Brassica carinata HOM05D001758 ORTHO05D004430 3.0e-65 251.9 145 82.8
AL6G45790 Arabidopsis lyrata HOM05D001758 ORTHO05D004430 3.9e-65 251.5 145 84.1
AT4G11380 Arabidopsis thaliana HOM05D001758 ORTHO05D004430 3.9e-65 251.5 145 83.4
Thhalv10028407m.g Eutrema salsugineum HOM05D001758 ORTHO05D004430 1.9e-64 249.2 145 80.7
BcaC04g21134 Brassica carinata HOM05D001758 ORTHO05D004430 5.7e-64 247.7 145 80.7
A09p27770 Brassica napus HOM05D001758 ORTHO05D004430 5.7e-64 247.7 145 80.7
C09p35180 Brassica napus HOM05D001758 ORTHO05D004430 5.7e-64 247.7 145 80.7
BolC9t56364H Brassica oleracea HOM05D001758 ORTHO05D004430 5.7e-64 247.7 145 80.7
BraA09t38347Z Brassica rapa HOM05D001758 ORTHO05D004430 5.7e-64 247.7 145 80.7
Aa31LG9G10850 Aethionema arabicum HOM05D001758 ORTHO05D004430 1.4e-62 243.0 145 78.6
THA.LOC104814663 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 3.8e-60 235.0 143 79.0
THA.LOC104806416 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 1.1e-59 233.4 141 80.9
THA.LOC104813023 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 2.1e-58 229.2 143 76.9
Ciclev10018786m.g Citrus clementina HOM05D001758 ORTHO05D004430 2.7e-58 228.8 145 72.4
SGA_v2.0_scaffold48G18078 Striga asiatica HOM05D001758 ORTHO05D004430 1.0e-57 226.9 145 73.1
Peaxi162Scf00074g02036 Petunia axillaris HOM05D001758 ORTHO05D004430 1.4e-57 226.5 145 71.7
Solyc08g081320.3 Solanum lycopersicum HOM05D001758 ORTHO05D004430 1.8e-57 226.1 145 70.3
Sopen08g029630 Solanum pennellii HOM05D001758 ORTHO05D004430 1.8e-57 226.1 145 70.3
SGA_v2.0_scaffold144G35913 Striga asiatica HOM05D001758 ORTHO05D004430 1.8e-57 226.1 145 72.4
CiPaw.12G091200 Carya illinoinensis HOM05D001758 ORTHO05D004430 3.9e-57 224.9 145 71.0
vmacro13146 Vaccinium macrocarpon HOM05D001758 ORTHO05D004430 3.9e-57 224.9 145 71.7
vmacro13195 Vaccinium macrocarpon HOM05D001758 ORTHO05D004430 3.9e-57 224.9 145 71.7
Nitab4.5_0001522g0060 Nicotiana tabacum HOM05D001758 ORTHO05D004430 5.1e-57 224.6 145 71.0
Duzib205G0508 Durio zibethinus HOM05D001758 ORTHO05D004430 6.7e-57 224.2 145 71.0
PGSC0003DMG400012194 Solanum tuberosum HOM05D001758 ORTHO05D004430 6.7e-57 224.2 145 70.3
Nitab4.5_0002975g0020 Nicotiana tabacum HOM05D001758 ORTHO05D004430 8.8e-57 223.8 145 71.7
Gorai.004G213900 Gossypium raimondii HOM05D001758 ORTHO05D004430 1.1e-56 223.4 145 71.7
AUR62027253 Chenopodium quinoa HOM05D001758 ORTHO05D004430 1.5e-56 223.0 141 73.8
Gohir.A03G019300 Gossypium hirsutum HOM05D001758 ORTHO05D004430 1.5e-56 223.0 145 69.7
SalBow1G0547 Salvia bowleyana HOM05D001758 ORTHO05D004430 1.5e-56 223.0 145 71.7
AUR62010715 Chenopodium quinoa HOM05D001758 ORTHO05D004430 1.9e-56 222.6 141 73.8
Dinv38922 Davidia involucrata HOM05D001758 ORTHO05D004430 1.9e-56 222.6 145 71.0
Migut.E01190 Erythranthe guttata HOM05D001758 ORTHO05D004430 1.9e-56 222.6 145 69.7
Gohir.D08G202500 Gossypium hirsutum HOM05D001758 ORTHO05D004430 2.5e-56 222.2 145 71.0
Potri.003G130400 Populus trichocarpa HOM05D001758 ORTHO05D004430 2.5e-56 222.2 145 71.0
MSTRG.1854 Avicennia marina HOM05D001758 ORTHO05D004430 3.3e-56 221.9 145 71.7
Manes.02G136100 Manihot esculenta HOM05D001758 ORTHO05D004430 3.3e-56 221.9 143 70.6
Actinidia27374 Actinidia chinensis HOM05D001758 ORTHO05D004430 4.3e-56 221.5 145 71.0
CAN.G532.6 Capsicum annuum HOM05D001758 ORTHO05D004430 4.3e-56 221.5 145 69.0
Rhsim07G0088700 Rhododendron simsii HOM05D001758 ORTHO05D004430 4.3e-56 221.5 145 71.0
Duzib084G0730 Durio zibethinus HOM05D001758 ORTHO05D004430 5.7e-56 221.1 145 70.3
Gohir.D03G149700 Gossypium hirsutum HOM05D001758 ORTHO05D004430 5.7e-56 221.1 144 70.1
QL12p032420 Quercus lobata HOM05D001758 ORTHO05D004430 5.7e-56 221.1 145 70.3
TWI60G1699 Tripterygium wilfordii HOM05D001758 ORTHO05D004430 7.4e-56 220.7 143 71.3
CSS0009285 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 9.7e-56 220.3 145 69.7
Potri.001G101400 Populus trichocarpa HOM05D001758 ORTHO05D004430 9.7e-56 220.3 145 70.3
Sabra01G0076400 Salix brachista HOM05D001758 ORTHO05D004430 9.7e-56 220.3 145 70.3
Hund14840 Selenicereus undatus HOM05D001758 ORTHO05D004430 9.7e-56 220.3 145 70.3
EL10Ac5g12803 Beta vulgaris HOM05D001758 ORTHO05D004430 1.3e-55 219.9 141 71.6
COL.COLO4_34497 Corchorus olitorius HOM05D001758 ORTHO05D004430 1.3e-55 219.9 143 69.9
Gorai.003G157000 Gossypium raimondii HOM05D001758 ORTHO05D004430 1.3e-55 219.9 144 69.4
Lsat_1_v5_gn_6_86320 Lactuca sativa HOM05D001758 ORTHO05D004430 1.3e-55 219.9 143 69.9
Thecc.03G282700 Theobroma cacao HOM05D001758 ORTHO05D004430 1.3e-55 219.9 145 69.0
Actinidia14582 Actinidia chinensis HOM05D001758 ORTHO05D004430 1.7e-55 219.5 145 71.7
ECA233G5934 Erigeron canadensis HOM05D001758 ORTHO05D004430 1.7e-55 219.5 145 71.0
CSS0019297 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 2.8e-55 218.8 145 69.0
PSO675G0536 Papaver somniferum HOM05D001758 ORTHO05D004430 2.8e-55 218.8 145 69.7
RcHm_v2.0_Chr7g0197091 Rosa chinensis HOM05D001758 ORTHO05D004430 2.8e-55 218.8 145 69.0
PSO541G5667 Papaver somniferum HOM05D001758 ORTHO05D004430 4.8e-55 218.0 145 69.7
Phvul.002G034100 Phaseolus vulgaris HOM05D001758 ORTHO05D004430 4.8e-55 218.0 143 69.9
Lalb_Chr16g0376841 Lupinus albus HOM05D001758 ORTHO05D004430 6.3e-55 217.6 143 69.9
VMungo1215G2939 Vigna mungo HOM05D001758 ORTHO05D004430 6.3e-55 217.6 143 70.6
FAN13G1114 Fragaria x ananassa HOM05D001758 ORTHO05D004430 8.2e-55 217.2 145 67.6
HanXRQChr13g0416041 Helianthus annuus HOM05D001758 ORTHO05D004430 8.2e-55 217.2 145 68.3
Lj8A218T22 Lonicera japonica HOM05D001758 ORTHO05D004430 8.2e-55 217.2 145 69.0
CANSAT21G2030 Cannabis sativa HOM05D001758 ORTHO05D004430 1.1e-54 216.9 145 69.7
FAN04G0007 Fragaria x ananassa HOM05D001758 ORTHO05D004430 1.1e-54 216.9 145 67.6
FAN08G0671 Fragaria x ananassa HOM05D001758 ORTHO05D004430 1.1e-54 216.9 145 67.6
ClCG02G002170 Citrullus lanatus HOM05D001758 ORTHO05D004430 1.4e-54 216.5 145 69.0
FvH4_5g02830 Fragaria vesca HOM05D001758 ORTHO05D004430 1.4e-54 216.5 145 67.6
FAN18G3406 Fragaria x ananassa HOM05D001758 ORTHO05D004430 1.4e-54 216.5 145 67.6
VMungo1127G1185 Vigna mungo HOM05D001758 ORTHO05D004430 1.8e-54 216.1 145 67.6
Glyma.12G021600 Glycine max HOM05D001758 ORTHO05D004430 2.4e-54 215.7 145 68.3
Prupe.5G103900 Prunus persica HOM05D001758 ORTHO05D004430 2.4e-54 215.7 145 67.6
TAR625G0205 Trochodendron aralioides HOM05D001758 ORTHO05D004430 2.4e-54 215.7 145 69.0
Eucgr.D01829 Eucalyptus grandis HOM05D001758 ORTHO05D004430 3.1e-54 215.3 145 69.0
Oeu007743.2 Olea europaea HOM05D001758 ORTHO05D004430 4.1e-54 214.9 145 68.3
Cc08_g15000 Coffea canephora HOM05D001758 ORTHO05D004430 5.3e-54 214.5 145 68.3
MELO3C018841.2 Cucumis melo HOM05D001758 ORTHO05D004430 5.3e-54 214.5 145 68.3
Lsat_1_v5_gn_6_5441 Lactuca sativa HOM05D001758 ORTHO05D004430 5.3e-54 214.5 145 67.6
Sed0001016 Sechium edule HOM05D001758 ORTHO05D004430 6.9e-54 214.2 145 66.9
TPR.G22570 Trifolium pratense HOM05D001758 ORTHO05D004430 6.9e-54 214.2 145 66.2
Glyma.11G015700 Glycine max HOM05D001758 ORTHO05D004430 9.1e-54 213.8 143 69.2
Glyma.11G095501 Glycine max HOM05D001758 ORTHO05D004430 9.1e-54 213.8 145 68.3
Lalb_Chr05g0211451 Lupinus albus HOM05D001758 ORTHO05D004430 9.1e-54 213.8 142 67.6
MBI07_g21076_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 9.1e-54 213.8 142 69.0
Glyma.01G227000 Glycine max HOM05D001758 ORTHO05D004430 1.2e-53 213.4 143 69.2
Sabra03G0092700 Salix brachista HOM05D001758 ORTHO05D004430 1.2e-53 213.4 145 67.6
unitig_62.g23540 Utricularia gibba HOM05D001758 ORTHO05D017200 1.2e-53 213.4 145 68.3
arahy.Tifrunner.gnm1.ann1.KK02P6 Arachis hypogaea HOM05D001758 ORTHO05D004430 1.5e-53 213.0 145 68.3
CSS0038252 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 1.5e-53 213.0 145 66.9
ECA240G1636 Erigeron canadensis HOM05D001758 ORTHO05D004430 1.5e-53 213.0 145 65.5
HanXRQChr13g0394171 Helianthus annuus HOM05D001758 ORTHO05D004430 1.5e-53 213.0 145 69.7
arahy.Tifrunner.gnm1.ann1.AY0C6D Arachis hypogaea HOM05D001758 ORTHO05D004430 2.0e-53 212.6 145 68.3
MD14G1108600 Malus domestica HOM05D001758 ORTHO05D004430 2.0e-53 212.6 145 66.2
MELO3C005693.2 Cucumis melo HOM05D001758 ORTHO05D004430 2.6e-53 212.2 145 66.2
CsaV3_7G003330 Cucumis sativus L. HOM05D001758 ORTHO05D004430 2.6e-53 212.2 145 66.2
Oeu011033.1 Olea europaea HOM05D001758 ORTHO05D004430 3.4e-53 211.8 144 68.1
Atru.chr9.2154 Acer truncatum HOM05D001758 ORTHO05D004430 5.9e-53 211.1 145 65.5
Psat7g179680 Pisum sativum HOM05D001758 ORTHO05D004430 5.9e-53 211.1 145 66.2
Lj3g0022998 Lotus japonicus HOM05D001758 ORTHO05D004430 7.7e-53 210.7 145 65.5
MD06G1087800 Malus domestica HOM05D001758 ORTHO05D004430 7.7e-53 210.7 145 65.5
Phvul.011G078200 Phaseolus vulgaris HOM05D001758 ORTHO05D004430 7.7e-53 210.7 145 66.9
CsaV3_5G002640 Cucumis sativus L. HOM05D001758 ORTHO05D004430 1.3e-52 209.9 145 65.5
Sed0023378 Sechium edule HOM05D001758 ORTHO05D004430 1.3e-52 209.9 145 64.8
HPP92_008911 Vanilla planifolia HOM05D001758 ORTHO05D004430 2.9e-52 208.8 145 67.6
GSVIVG01019391001 Vitis vinifera HOM05D001758 ORTHO05D004430 2.9e-52 208.8 145 67.6
Oeu042339.1 Olea europaea HOM05D001758 ORTHO05D004430 8.5e-52 207.2 146 67.8
Lsat_1_v5_gn_3_6140 Lactuca sativa HOM05D001758 ORTHO05D004430 1.1e-51 206.8 145 66.9
Medtr4g076210 Medicago truncatula HOM05D001758 ORTHO05D004430 1.1e-51 206.8 145 64.8
Zm00001eb394540 Zea mays HOM05D001758 ORTHO05D004430 1.1e-51 206.8 145 67.6
Haze_08813 Corylus avellana HOM05D001758 ORTHO05D004430 2.5e-51 205.7 143 66.4
Os03g0355600 Oryza sativa ssp. japonica HOM05D001758 ORTHO05D004430 4.2e-51 204.9 145 65.5
Zm00001eb017130 Zea mays HOM05D001758 ORTHO05D004430 4.2e-51 204.9 145 66.9
Cfa012203 Carpinus fangiana HOM05D001758 ORTHO05D004430 5.5e-51 204.5 143 65.7
Pp3c14_2460 Physcomitrium patens HOM05D001758 ORTHO05D004430 1.6e-50 203.0 147 66.0
Nn6g31920 Nelumbo nucifera HOM05D001758 ORTHO05D004430 4.7e-50 201.4 145 66.2
Pp3c2_18140 Physcomitrium patens HOM05D001758 ORTHO05D004430 1.4e-49 199.9 147 63.3
ATR0329G044 Amborella trichopoda HOM05D001758 ORTHO05D004430 5.1e-49 198.0 145 64.1
BcaNung04479 Brassica carinata HOM05D001758 ORTHO05D017200 1.5e-48 196.4 105 91.4
Aqoxy5G01113 Aquilegia oxysepala HOM05D001758 ORTHO05D004430 4.4e-48 194.9 145 64.1
AagrBONN_evm.TU.Sc2ySwM_117.2557 Anthoceros agrestis HOM05D001758 ORTHO05D004430 1.7e-47 193.0 144 65.3
Mapoly0002s0295 Marchantia polymorpha HOM05D001758 ORTHO05D004430 8.2e-47 190.7 147 62.6
ClCG01G002530 Citrullus lanatus HOM05D001758 ORTHO05D004430 1.4e-46 189.9 202 48.5
SEGI_36929 Sequoiadendron giganteum HOM05D001758 ORTHO05D004430 2.4e-46 189.1 147 59.9
HanXRQChr05g0145951 Helianthus annuus HOM05D001758 ORTHO05D017200 1.5e-45 186.4 123 70.7
Pp3c1_19340 Physcomitrium patens HOM05D001758 ORTHO05D004430 1.5e-45 186.4 147 61.2
CBR_g10902 Chara braunii HOM05D001758 ORTHO05D004430 3.4e-45 185.3 149 59.1
HanXRQChr16g0516131 Helianthus annuus HOM05D001758 ORTHO05D017200 4.5e-45 184.9 123 70.7
DCAR_005564 Daucus carota HOM05D001758 ORTHO05D004430 9.4e-43 177.2 127 65.4
Cpa.g.sc180.10 Carica papaya HOM05D001758 ORTHO05D017200 2.7e-42 175.6 108 74.1
SMO298G0016 Selaginella moellendorffii HOM05D001758 ORTHO05D004430 4.7e-42 174.9 145 57.2
DCAR_008367 Daucus carota HOM05D001758 ORTHO05D004430 2.9e-36 155.6 99 72.7
Gohir.A08G184000 Gossypium hirsutum HOM05D001758 ORTHO05D004430 1.1e-35 153.7 100 67.0
CDE02G4367 Ceratophyllum demersum HOM05D001758 ORTHO05D004430 6.1e-34 147.9 102 65.7
MBI10_g48303_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 5.2e-33 144.8 98 66.3
VMungo1215G0906 Vigna mungo HOM05D001758 ORTHO05D017200 8.3e-23 110.9 90 57.8
Lj2A182G27 Lonicera japonica HOM05D001758 ORTHO05D017200 1.8e-22 109.8 141 44.7
Actinidia27143 Actinidia chinensis HOM05D001758 ORTHO05D017200 4.7e-18 95.1 97 51.5
Cre11.g478156 Chlamydomonas reinhardtii HOM05D001758 ORTHO05D004430 1.7e-12 76.6 140 35.0
Actinidia33743 Actinidia chinensis HOM05D001758 ORTHO05D004430 4.3e-11 72.0 62 61.3
Nn5g30834 Nelumbo nucifera HOM05D001758 ORTHO05D004430 2.2e-07 59.7 42 66.7
C07p23160 Brassica napus HOM05D001758 ORTHO05D102050 5.4e-06 55.1 38 73.7
BolC3t15858H Brassica oleracea HOM05D001758 ORTHO05D004430 5.4e-06 55.1 94 39.4


User provided reference genes

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